RNA–Protein interactions for RNA: ENST00000582331.2

CCDC47-205, Transcript of coiled-coil domain containing 47, humanhuman

TSL 3

Gene CCDC47, Length 693 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-205ENST00000582331 RAPGEF6Q8TEU7 1601 aa13□□□□□ -0.33
CCDC47-205ENST00000582331 ARHGEF40Q8TER5 1519 aa13□□□□□ -0.33
CCDC47-205ENST00000582331 AKNAQ7Z591 1439 aa12.99□□□□□ -0.33
CCDC47-205ENST00000582331 PLEKHD1A6NEE1 506 aa12.99□□□□□ -0.33
CCDC47-205ENST00000582331 FANCAO15360 1455 aa12.97□□□□□ -0.33
CCDC47-205ENST00000582331 FHOD3Q2V2M9 1422 aa12.97□□□□□ -0.33
CCDC47-205ENST00000582331 RICTORQ6R327 1708 aa12.96□□□□□ -0.33
CCDC47-205ENST00000582331 SAMD9Q5K651 1589 aa12.96□□□□□ -0.33
CCDC47-205ENST00000582331 MLECQ14165 292 aa12.96□□□□□ -0.33
CCDC47-205ENST00000582331 NUP153P49790 1475 aaKnown RBP12.96□□□□□ -0.34
CCDC47-205ENST00000582331 DISP3Q9P2K9 1392 aa12.95□□□□□ -0.34
CCDC47-205ENST00000582331 SOCS7O14512 581 aa12.94□□□□□ -0.34
CCDC47-205ENST00000582331 ILDR2Q71H61 639 aa12.94□□□□□ -0.34
CCDC47-205ENST00000582331 CFAP74Q9C0B2 1584 aa12.94□□□□□ -0.34
CCDC47-205ENST00000582331 ZFYVE16Q7Z3T8 1539 aa12.93□□□□□ -0.34
CCDC47-205ENST00000582331 MAGI2Q86UL8 1455 aa12.93□□□□□ -0.34
CCDC47-205ENST00000582331 YEATS2Q9ULM3 1422 aa12.93□□□□□ -0.34
CCDC47-205ENST00000582331 EFCAB5A4FU69 1503 aa12.93□□□□□ -0.34
CCDC47-205ENST00000582331 ZMYM4Q5VZL5 1548 aa12.93□□□□□ -0.34
CCDC47-205ENST00000582331 RANGAP1P46060 587 aaPredicted RBP12.92□□□□□ -0.34
CCDC47-205ENST00000582331 CSRNP3Q8WYN3 585 aa12.92□□□□□ -0.34
CCDC47-205ENST00000582331 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.9□□□□□ -0.34
CCDC47-205ENST00000582331 U3KPZ7 1027 aaPredicted RBP12.9□□□□□ -0.34
CCDC47-205ENST00000582331 SIGLEC1Q9BZZ2 1709 aa12.9□□□□□ -0.34
CCDC47-205ENST00000582331 FER1L4A9Z1Z3 1794 aa12.89□□□□□ -0.35
CCDC47-205ENST00000582331 TTC37Q6PGP7 1564 aa12.89□□□□□ -0.35
CCDC47-205ENST00000582331 HECW1Q76N89 1606 aa12.88□□□□□ -0.35
CCDC47-205ENST00000582331 SCAPERQ9BY12 1400 aa12.88□□□□□ -0.35
CCDC47-205ENST00000582331 CEBPAP49715 358 aaPredicted RBP12.87□□□□□ -0.35
CCDC47-205ENST00000582331 ATP10AO60312 1499 aa12.86□□□□□ -0.35
CCDC47-205ENST00000582331 SLC4A2P04920 1241 aa12.86□□□□□ -0.35
CCDC47-205ENST00000582331 PREX1Q8TCU6 1659 aa12.86□□□□□ -0.35
CCDC47-205ENST00000582331 ARHGEF12Q9NZN5 1544 aa12.85□□□□□ -0.35
CCDC47-205ENST00000582331 PLCH2O75038 1416 aa12.85□□□□□ -0.35
CCDC47-205ENST00000582331 C9orf84Q5VXU9 1444 aa12.84□□□□□ -0.35
CCDC47-205ENST00000582331 EFCAB2Q5VUJ9 269 aa12.83□□□□□ -0.36
CCDC47-205ENST00000582331 STRCQ7RTU9 1775 aa12.82□□□□□ -0.36
CCDC47-205ENST00000582331 UHRF1BP1Q6BDS2 1440 aa12.82□□□□□ -0.36
CCDC47-205ENST00000582331 PTPRTO14522 1441 aa12.79□□□□□ -0.36
CCDC47-205ENST00000582331 CDK13Q14004 1512 aaKnown RBP12.79□□□□□ -0.36
CCDC47-205ENST00000582331 SPATA31D1Q6ZQQ2 1576 aa12.79□□□□□ -0.36
CCDC47-205ENST00000582331 MYT1LQ9UL68 1186 aa12.79□□□□□ -0.36
CCDC47-205ENST00000582331 ATP1B4Q9UN42 357 aaPredicted RBP12.78□□□□□ -0.36
CCDC47-205ENST00000582331 SETD1BQ9UPS6 1966 aaKnown RBP12.78□□□□□ -0.36
CCDC47-205ENST00000582331 AFAP1Q8N556 730 aa12.77□□□□□ -0.37
CCDC47-205ENST00000582331 CDK11AQ9UQ88 783 aaPredicted RBP12.77□□□□□ -0.37
CCDC47-205ENST00000582331 ESF1Q9H501 851 aaKnown RBP12.76□□□□□ -0.37
CCDC47-205ENST00000582331 EEA1Q15075 1411 aa12.76□□□□□ -0.37
CCDC47-205ENST00000582331 ZNF518AQ6AHZ1 1483 aa12.76□□□□□ -0.37
CCDC47-205ENST00000582331 MYO5CQ9NQX4 1742 aa12.74□□□□□ -0.37
CCDC47-205ENST00000582331 LTBP4Q8N2S1 1624 aa12.73□□□□□ -0.37
CCDC47-205ENST00000582331 IQSEC2Q5JU85 1478 aa12.72□□□□□ -0.37
CCDC47-205ENST00000582331 TRAPPC8Q9Y2L5 1435 aa12.72□□□□□ -0.37
CCDC47-205ENST00000582331 ARHGAP5Q13017 1502 aa12.72□□□□□ -0.37
CCDC47-205ENST00000582331 C3P01024 1663 aa12.71□□□□□ -0.37
CCDC47-205ENST00000582331 SLC4A1APQ9BWU0 796 aaKnown RBP12.71□□□□□ -0.37
CCDC47-205ENST00000582331 KDM5CP41229 1560 aa12.71□□□□□ -0.37
CCDC47-205ENST00000582331 REREQ9P2R6 1566 aa12.71□□□□□ -0.37
CCDC47-205ENST00000582331 DIP2CQ9Y2E4 1556 aa12.7□□□□□ -0.38
CCDC47-205ENST00000582331 FMN1Q68DA7 1419 aa12.7□□□□□ -0.38
CCDC47-205ENST00000582331 APLP2Q06481 763 aa12.69□□□□□ -0.38
CCDC47-205ENST00000582331 MLH3Q9UHC1 1453 aa12.69□□□□□ -0.38
CCDC47-205ENST00000582331 TROQ12816 1431 aaPredicted RBP12.69□□□□□ -0.38
CCDC47-205ENST00000582331 NCOA1Q15788 1441 aa12.69□□□□□ -0.38
CCDC47-205ENST00000582331 KIF14Q15058 1648 aa12.69□□□□□ -0.38
CCDC47-205ENST00000582331 AGLP35573 1532 aa12.68□□□□□ -0.38
CCDC47-205ENST00000582331 CLIP1P30622 1438 aa12.68□□□□□ -0.38
CCDC47-205ENST00000582331 UBAP1LF5GYI3 381 aa12.67□□□□□ -0.38
CCDC47-205ENST00000582331 CNTLNQ9NXG0 1405 aa12.67□□□□□ -0.38
CCDC47-205ENST00000582331 ABCA6Q8N139 1617 aa12.66□□□□□ -0.38
CCDC47-205ENST00000582331 UBTFP17480 764 aaKnown RBP12.66□□□□□ -0.38
CCDC47-205ENST00000582331 CAPN15O75808 1086 aa12.65□□□□□ -0.38
CCDC47-205ENST00000582331 NCKAP5LQ9HCH0 1330 aa12.64□□□□□ -0.39
CCDC47-205ENST00000582331 CAMSAP1Q5T5Y3 1602 aa12.64□□□□□ -0.39
CCDC47-205ENST00000582331 SPINK5Q9NQ38 1064 aaPredicted RBP12.64□□□□□ -0.39
CCDC47-205ENST00000582331 ZNF335Q9H4Z2 1342 aaPredicted RBP12.63□□□□□ -0.39
CCDC47-205ENST00000582331 NPATQ14207 1427 aa12.63□□□□□ -0.39
CCDC47-205ENST00000582331 EHMT2Q96KQ7 1210 aa12.63□□□□□ -0.39
CCDC47-205ENST00000582331 CDC42BPBQ9Y5S2 1711 aa12.62□□□□□ -0.39
CCDC47-205ENST00000582331 ARHGAP35Q9NRY4 1499 aa12.62□□□□□ -0.39
CCDC47-205ENST00000582331 ZMYM3Q14202 1370 aa12.62□□□□□ -0.39
CCDC47-205ENST00000582331 PKD2Q13563 968 aa12.61□□□□□ -0.39
CCDC47-205ENST00000582331 SAMD1Q6SPF0 538 aaPredicted RBP12.61□□□□□ -0.39
CCDC47-205ENST00000582331 ABCC1P33527 1531 aa12.61□□□□□ -0.39
CCDC47-205ENST00000582331 KIDINS220Q9ULH0 1771 aa12.6□□□□□ -0.39
CCDC47-205ENST00000582331 MROH2AA6NES4 1674 aa12.59□□□□□ -0.39
CCDC47-205ENST00000582331 PREX2Q70Z35 1606 aa12.59□□□□□ -0.39
CCDC47-205ENST00000582331 ITSN2Q9NZM3 1697 aa12.58□□□□□ -0.4
CCDC47-205ENST00000582331 ZNF777Q9ULD5 760 aaPredicted RBP12.57□□□□□ -0.4
CCDC47-205ENST00000582331 PLA2R1Q13018 1463 aa12.57□□□□□ -0.4
CCDC47-205ENST00000582331 SPAG9O60271 1321 aaKnown RBP12.57□□□□□ -0.4
CCDC47-205ENST00000582331 MYCNP04198 464 aaPredicted RBP12.56□□□□□ -0.4
CCDC47-205ENST00000582331 LRRIQ1Q96JM4 1722 aa12.56□□□□□ -0.4
CCDC47-205ENST00000582331 HSPA1LP34931 641 aa12.55□□□□□ -0.4
CCDC47-205ENST00000582331 SAMD9LQ8IVG5 1584 aa12.55□□□□□ -0.4
CCDC47-205ENST00000582331 TCOF1Q13428 1488 aaKnown RBP12.54□□□□□ -0.4
CCDC47-205ENST00000582331 DSG3P32926 999 aa12.54□□□□□ -0.4
CCDC47-205ENST00000582331 HNRNPMP52272 730 aaKnown RBP eCLIP12.54□□□□□ -0.4
CCDC47-205ENST00000582331 PIP4K2BP78356 416 aa12.54□□□□□ -0.4
CCDC47-205ENST00000582331 GGT6Q6P531 493 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms