RNA–Protein interactions for RNA: ENST00000582331.2

CCDC47-205, Transcript of coiled-coil domain containing 47, humanhuman

TSL 3

Gene CCDC47, Length 693 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-205ENST00000582331 AEBP2Q6ZN18 517 aaPredicted RBP21.05■□□□□ 0.96
CCDC47-205ENST00000582331 CHIC1Q5VXU3 224 aa20.22■□□□□ 0.83
CCDC47-205ENST00000582331 NISCHQ9Y2I1 1504 aa19.44■□□□□ 0.7
CCDC47-205ENST00000582331 SENP3Q9H4L4 574 aaPredicted RBP18.03■□□□□ 0.48
CCDC47-205ENST00000582331 ABCC9O60706 1549 aa17.94■□□□□ 0.46
CCDC47-205ENST00000582331 PHF23Q9BUL5 403 aaPredicted RBP17.78■□□□□ 0.44
CCDC47-205ENST00000582331 CCDC180Q9P1Z9 1646 aa17.56■□□□□ 0.4
CCDC47-205ENST00000582331 DNAJC5BQ9UF47 199 aa17.15■□□□□ 0.34
CCDC47-205ENST00000582331 RB1CC1Q8TDY2 1594 aa16.91■□□□□ 0.3
CCDC47-205ENST00000582331 NACADO15069 1562 aa16.72■□□□□ 0.27
CCDC47-205ENST00000582331 FOXD1Q16676 465 aa16.71■□□□□ 0.27
CCDC47-205ENST00000582331 PABPN1Q86U42 306 aaKnown RBP eCLIP16.68■□□□□ 0.26
CCDC47-205ENST00000582331 DCAF8L2P0C7V8 631 aa16.64■□□□□ 0.25
CCDC47-205ENST00000582331 UNC13AQ9UPW8 1703 aa16.48■□□□□ 0.23
CCDC47-205ENST00000582331 BICRAQ9NZM4 1560 aa16.41■□□□□ 0.22
CCDC47-205ENST00000582331 MYO15BQ96JP2 1530 aa16.36■□□□□ 0.21
CCDC47-205ENST00000582331 PLPPR3Q6T4P5 718 aa16.27■□□□□ 0.2
CCDC47-205ENST00000582331 CECR2Q9BXF3 1484 aa16.19■□□□□ 0.18
CCDC47-205ENST00000582331 CC2D2AQ9P2K1 1620 aa16.17■□□□□ 0.18
CCDC47-205ENST00000582331 SHROOM4Q9ULL8 1493 aa16.16■□□□□ 0.18
CCDC47-205ENST00000582331 EIF4G1Q04637 1599 aaKnown RBP16.04■□□□□ 0.16
CCDC47-205ENST00000582331 DCAF1Q9Y4B6 1507 aa16.03■□□□□ 0.16
CCDC47-205ENST00000582331 DNAJC5Q9H3Z4 198 aa16.02■□□□□ 0.16
CCDC47-205ENST00000582331 ZCCHC6Q5VYS8 1495 aaKnown RBP16.02■□□□□ 0.15
CCDC47-205ENST00000582331 SCRIBQ14160 1630 aa15.99■□□□□ 0.15
CCDC47-205ENST00000582331 PPP6R1Q9UPN7 881 aa15.73■□□□□ 0.11
CCDC47-205ENST00000582331 ADRA2BP18089 450 aa15.69■□□□□ 0.1
CCDC47-205ENST00000582331 MSH5O43196 834 aa15.67■□□□□ 0.1
CCDC47-205ENST00000582331 PIAS4Q8N2W9 510 aaPredicted RBP15.67■□□□□ 0.1
CCDC47-205ENST00000582331 CUX2O14529 1486 aa15.59■□□□□ 0.09
CCDC47-205ENST00000582331 ERCC6Q03468 1493 aa15.52■□□□□ 0.07
CCDC47-205ENST00000582331 NCAPD3P42695 1498 aa15.45■□□□□ 0.06
CCDC47-205ENST00000582331 ATAD2BQ9ULI0 1458 aa15.35■□□□□ 0.05
CCDC47-205ENST00000582331 NESP48681 1621 aa15.3■□□□□ 0.04
CCDC47-205ENST00000582331 SMARCA2P51531 1590 aa15.28■□□□□ 0.04
CCDC47-205ENST00000582331 HMGXB3Q12766 1538 aa15.27■□□□□ 0.03
CCDC47-205ENST00000582331 SMARCA4P51532 1647 aa15.22■□□□□ 0.03
CCDC47-205ENST00000582331 TRIM41Q8WV44 630 aa15.19■□□□□ 0.02
CCDC47-205ENST00000582331 BAZ1BQ9UIG0 1483 aaKnown RBP15.18■□□□□ 0.02
CCDC47-205ENST00000582331 THOC2Q8NI27 1593 aaKnown RBP15.18■□□□□ 0.02
CCDC47-205ENST00000582331 LAMC3Q9Y6N6 1575 aa15.14■□□□□ 0.01
CCDC47-205ENST00000582331 BAZ1AQ9NRL2 1556 aaPredicted RBP15.11■□□□□ 0.01
CCDC47-205ENST00000582331 PDS5BQ9NTI5 1447 aa15.09■□□□□ 0.01
CCDC47-205ENST00000582331 PEG3Q9GZU2 1588 aa15.07■□□□□ 0
CCDC47-205ENST00000582331 KIF21AQ7Z4S6 1674 aa15.06■□□□□ 0
CCDC47-205ENST00000582331 MROH2BQ7Z745 1585 aa14.98□□□□□ -0.01
CCDC47-205ENST00000582331 CADPSQ9ULU8 1353 aa14.98□□□□□ -0.01
CCDC47-205ENST00000582331 MRC2Q9UBG0 1479 aa14.95□□□□□ -0.02
CCDC47-205ENST00000582331 POTEDQ86YR6 584 aa14.92□□□□□ -0.02
CCDC47-205ENST00000582331 WDR62O43379 1518 aa14.92□□□□□ -0.02
CCDC47-205ENST00000582331 OSCARQ8IYS5 282 aa14.88□□□□□ -0.03
CCDC47-205ENST00000582331 CEP164Q9UPV0 1460 aa14.83□□□□□ -0.03
CCDC47-205ENST00000582331 FANCD2Q9BXW9 1451 aa14.79□□□□□ -0.04
CCDC47-205ENST00000582331 WIZO95785 1651 aa14.77□□□□□ -0.05
CCDC47-205ENST00000582331 CFTRP13569 1480 aa14.71□□□□□ -0.05
CCDC47-205ENST00000582331 URB2Q14146 1524 aaKnown RBP14.67□□□□□ -0.06
CCDC47-205ENST00000582331 RIMBP3CA6NJZ7 1639 aa14.66□□□□□ -0.06
CCDC47-205ENST00000582331 RIMBP3BA6NNM3 1639 aa14.66□□□□□ -0.06
CCDC47-205ENST00000582331 RIMBP3Q9UFD9 1639 aa14.66□□□□□ -0.06
CCDC47-205ENST00000582331 ARHGEF11O15085 1522 aa14.57□□□□□ -0.08
CCDC47-205ENST00000582331 CYB5RLQ6IPT4 315 aa14.56□□□□□ -0.08
CCDC47-205ENST00000582331 IFT140Q96RY7 1462 aa14.56□□□□□ -0.08
CCDC47-205ENST00000582331 TOP2AP11388 1531 aaKnown RBP14.56□□□□□ -0.08
CCDC47-205ENST00000582331 ZNF608Q9ULD9 1512 aaPredicted RBP14.56□□□□□ -0.08
CCDC47-205ENST00000582331 RSF1Q96T23 1441 aaPredicted RBP14.55□□□□□ -0.08
CCDC47-205ENST00000582331 TRHP20396 242 aaPredicted RBP14.52□□□□□ -0.09
CCDC47-205ENST00000582331 SCAF1Q9H7N4 1312 aaKnown RBP14.49□□□□□ -0.09
CCDC47-205ENST00000582331 PRDM2Q13029 1718 aa14.48□□□□□ -0.09
CCDC47-205ENST00000582331 TOPBP1Q92547 1522 aa14.46□□□□□ -0.09
CCDC47-205ENST00000582331 EIF4G3O43432 1585 aaKnown RBP14.43□□□□□ -0.1
CCDC47-205ENST00000582331 ABCC8Q09428 1581 aa14.43□□□□□ -0.1
CCDC47-205ENST00000582331 CCDC88BA6NC98 1476 aa14.43□□□□□ -0.1
CCDC47-205ENST00000582331 FBLN2P98095 1184 aa14.42□□□□□ -0.1
CCDC47-205ENST00000582331 ARAP1Q96P48 1450 aa14.41□□□□□ -0.1
CCDC47-205ENST00000582331 AQRO60306 1485 aaKnown RBP eCLIP14.4□□□□□ -0.12e-7■■■□□ 15.2
CCDC47-205ENST00000582331 CHD1O14646 1710 aa14.38□□□□□ -0.11
CCDC47-205ENST00000582331 DNMBPQ6XZF7 1577 aa14.37□□□□□ -0.11
CCDC47-205ENST00000582331 TARBP1Q13395 1621 aaKnown RBP14.35□□□□□ -0.11
CCDC47-205ENST00000582331 MAPK8IP2Q13387 824 aaPredicted RBP14.35□□□□□ -0.11
CCDC47-205ENST00000582331 DMRT2Q9Y5R5 561 aa14.3□□□□□ -0.12
CCDC47-205ENST00000582331 POLA1P09884 1462 aaPredicted RBP14.29□□□□□ -0.12
CCDC47-205ENST00000582331 TDRD9Q8NDG6 1382 aaKnown RBP14.27□□□□□ -0.12
CCDC47-205ENST00000582331 SOGA1O94964 1423 aa14.26□□□□□ -0.13
CCDC47-205ENST00000582331 RAD54L2Q9Y4B4 1467 aa14.25□□□□□ -0.13
CCDC47-205ENST00000582331 CHMP7Q8WUX9 453 aaPredicted RBP14.25□□□□□ -0.13
CCDC47-205ENST00000582331 PPP4R3CPQ6ZMV5 832 aa14.24□□□□□ -0.13
CCDC47-205ENST00000582331 SNAPC4Q5SXM2 1469 aa14.23□□□□□ -0.13
CCDC47-205ENST00000582331 CLASP1Q7Z460 1538 aa14.22□□□□□ -0.13
CCDC47-205ENST00000582331 SYNJ1O43426 1573 aa14.2□□□□□ -0.14
CCDC47-205ENST00000582331 WDR97A6NE52 1622 aa14.18□□□□□ -0.14
CCDC47-205ENST00000582331 MAGI1Q96QZ7 1491 aaPredicted RBP14.18□□□□□ -0.14
CCDC47-205ENST00000582331 FGD5Q6ZNL6 1462 aa14.16□□□□□ -0.14
CCDC47-205ENST00000582331 GRIN2BQ13224 1484 aa14.15□□□□□ -0.14
CCDC47-205ENST00000582331 SYNJ2O15056 1496 aa14.13□□□□□ -0.15
CCDC47-205ENST00000582331 GAPVD1Q14C86 1478 aa14.12□□□□□ -0.15
CCDC47-205ENST00000582331 CUX1P39880 1505 aa14.08□□□□□ -0.16
CCDC47-205ENST00000582331 PBRM1Q86U86 1689 aa14.03□□□□□ -0.16
CCDC47-205ENST00000582331 ERCC6L2Q5T890 1561 aa13.98□□□□□ -0.17
CCDC47-205ENST00000582331 CNKSR2Q8WXI2 1034 aa13.98□□□□□ -0.17
CCDC47-205ENST00000582331 ABCA10Q8WWZ4 1543 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms