RNA–Protein interactions for RNA: ENST00000581660.5

CSNK1D-219, Transcript of casein kinase 1 delta, humanhuman

TSL 5

Gene CSNK1D, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-219ENST00000581660 HECW1Q76N89 1606 aa23.84■■□□□ 1.41
CSNK1D-219ENST00000581660 STRCQ7RTU9 1775 aa23.81■■□□□ 1.4
CSNK1D-219ENST00000581660 PLEKHD1A6NEE1 506 aa23.81■■□□□ 1.4
CSNK1D-219ENST00000581660 DMRT2Q9Y5R5 561 aa23.81■■□□□ 1.4
CSNK1D-219ENST00000581660 MLECQ14165 292 aa23.79■■□□□ 1.4
CSNK1D-219ENST00000581660 ATP10AO60312 1499 aa23.76■■□□□ 1.39
CSNK1D-219ENST00000581660 C9orf84Q5VXU9 1444 aa23.75■■□□□ 1.39
CSNK1D-219ENST00000581660 SCAPERQ9BY12 1400 aa23.73■■□□□ 1.39
CSNK1D-219ENST00000581660 PTPRTO14522 1441 aa23.72■■□□□ 1.39
CSNK1D-219ENST00000581660 UHRF1BP1Q6BDS2 1440 aa23.71■■□□□ 1.39
CSNK1D-219ENST00000581660 PLCH2O75038 1416 aa23.7■■□□□ 1.38
CSNK1D-219ENST00000581660 SETD1BQ9UPS6 1966 aaKnown RBP23.7■■□□□ 1.38
CSNK1D-219ENST00000581660 CEBPAP49715 358 aaPredicted RBP23.69■■□□□ 1.38
CSNK1D-219ENST00000581660 IQSEC2Q5JU85 1478 aa23.68■■□□□ 1.38
CSNK1D-219ENST00000581660 LTBP4Q8N2S1 1624 aa23.66■■□□□ 1.38
CSNK1D-219ENST00000581660 CSRNP3Q8WYN3 585 aa23.62■■□□□ 1.37
CSNK1D-219ENST00000581660 ZNF518AQ6AHZ1 1483 aa23.59■■□□□ 1.37
CSNK1D-219ENST00000581660 KDM5CP41229 1560 aa23.59■■□□□ 1.37
CSNK1D-219ENST00000581660 REREQ9P2R6 1566 aa23.59■■□□□ 1.37
CSNK1D-219ENST00000581660 CDK13Q14004 1512 aaKnown RBP23.59■■□□□ 1.37
CSNK1D-219ENST00000581660 EFCAB2Q5VUJ9 269 aa23.57■■□□□ 1.36
CSNK1D-219ENST00000581660 MYO5CQ9NQX4 1742 aa23.56■■□□□ 1.36
CSNK1D-219ENST00000581660 C3P01024 1663 aa23.55■■□□□ 1.36
CSNK1D-219ENST00000581660 DIP2CQ9Y2E4 1556 aa23.54■■□□□ 1.36
CSNK1D-219ENST00000581660 NCOA1Q15788 1441 aa23.54■■□□□ 1.36
CSNK1D-219ENST00000581660 RANGAP1P46060 587 aaPredicted RBP23.52■■□□□ 1.36
CSNK1D-219ENST00000581660 TRAPPC8Q9Y2L5 1435 aa23.51■■□□□ 1.35
CSNK1D-219ENST00000581660 AGLP35573 1532 aa23.5■■□□□ 1.35
CSNK1D-219ENST00000581660 AFAP1Q8N556 730 aa23.47■■□□□ 1.35
CSNK1D-219ENST00000581660 MLH3Q9UHC1 1453 aa23.47■■□□□ 1.35
CSNK1D-219ENST00000581660 ABCA6Q8N139 1617 aa23.47■■□□□ 1.35
CSNK1D-219ENST00000581660 EEA1Q15075 1411 aa23.46■■□□□ 1.35
CSNK1D-219ENST00000581660 KIF14Q15058 1648 aa23.44■■□□□ 1.34
CSNK1D-219ENST00000581660 ARHGAP5Q13017 1502 aa23.43■■□□□ 1.34
CSNK1D-219ENST00000581660 CNTLNQ9NXG0 1405 aa23.43■■□□□ 1.34
CSNK1D-219ENST00000581660 NPATQ14207 1427 aa23.4■■□□□ 1.34
CSNK1D-219ENST00000581660 CAMSAP1Q5T5Y3 1602 aa23.4■■□□□ 1.34
CSNK1D-219ENST00000581660 CDK11AQ9UQ88 783 aaPredicted RBP23.39■■□□□ 1.33
CSNK1D-219ENST00000581660 TROQ12816 1431 aaPredicted RBP23.39■■□□□ 1.33
CSNK1D-219ENST00000581660 ESF1Q9H501 851 aaKnown RBP23.38■■□□□ 1.33
CSNK1D-219ENST00000581660 FMN1Q68DA7 1419 aa23.36■■□□□ 1.33
CSNK1D-219ENST00000581660 MROH2AA6NES4 1674 aa23.35■■□□□ 1.33
CSNK1D-219ENST00000581660 UBAP1LF5GYI3 381 aa23.35■■□□□ 1.33
CSNK1D-219ENST00000581660 MYT1LQ9UL68 1186 aa23.35■■□□□ 1.33
CSNK1D-219ENST00000581660 ABCC1P33527 1531 aa23.34■■□□□ 1.33
CSNK1D-219ENST00000581660 ZNF335Q9H4Z2 1342 aaPredicted RBP23.33■■□□□ 1.33
CSNK1D-219ENST00000581660 CDC42BPBQ9Y5S2 1711 aa23.33■■□□□ 1.32
CSNK1D-219ENST00000581660 CLIP1P30622 1438 aa23.33■■□□□ 1.32
CSNK1D-219ENST00000581660 PLA2R1Q13018 1463 aa23.31■■□□□ 1.32
CSNK1D-219ENST00000581660 KIDINS220Q9ULH0 1771 aa23.3■■□□□ 1.32
CSNK1D-219ENST00000581660 ITSN2Q9NZM3 1697 aa23.29■■□□□ 1.32
CSNK1D-219ENST00000581660 PREX2Q70Z35 1606 aa23.29■■□□□ 1.32
CSNK1D-219ENST00000581660 TCOF1Q13428 1488 aaKnown RBP23.29■■□□□ 1.32
CSNK1D-219ENST00000581660 NCKAP5LQ9HCH0 1330 aa23.29■■□□□ 1.32
CSNK1D-219ENST00000581660 ZNF142P52746 1687 aaPredicted RBP23.28■■□□□ 1.32
CSNK1D-219ENST00000581660 PKD2Q13563 968 aa23.27■■□□□ 1.32
CSNK1D-219ENST00000581660 MED1Q15648 1581 aaPredicted RBP23.26■■□□□ 1.31
CSNK1D-219ENST00000581660 ZMYM3Q14202 1370 aa23.26■■□□□ 1.31
CSNK1D-219ENST00000581660 ATP1B4Q9UN42 357 aaPredicted RBP23.25■■□□□ 1.31
CSNK1D-219ENST00000581660 MYO3AQ8NEV4 1616 aa23.24■■□□□ 1.31
CSNK1D-219ENST00000581660 ARHGAP35Q9NRY4 1499 aa23.24■■□□□ 1.31
CSNK1D-219ENST00000581660 CEP170BQ9Y4F5 1589 aaPredicted RBP23.22■■□□□ 1.31
CSNK1D-219ENST00000581660 LRRIQ1Q96JM4 1722 aa23.22■■□□□ 1.31
CSNK1D-219ENST00000581660 SAMD9LQ8IVG5 1584 aa23.19■■□□□ 1.3
CSNK1D-219ENST00000581660 PTPRKQ15262 1439 aa23.18■■□□□ 1.3
CSNK1D-219ENST00000581660 HSPA1LP34931 641 aa23.17■■□□□ 1.3
CSNK1D-219ENST00000581660 PPP6R1Q9UPN7 881 aa23.16■■□□□ 1.3
CSNK1D-219ENST00000581660 SUPT6HQ7KZ85 1726 aaKnown RBP23.16■■□□□ 1.3
CSNK1D-219ENST00000581660 CLTCQ00610 1675 aaKnown RBP23.16■■□□□ 1.3
CSNK1D-219ENST00000581660 PLXNC1O60486 1568 aa23.15■■□□□ 1.3
CSNK1D-219ENST00000581660 CDC42BPAQ5VT25 1732 aa23.13■■□□□ 1.29
CSNK1D-219ENST00000581660 CPS1P31327 1500 aa23.12■■□□□ 1.29
CSNK1D-219ENST00000581660 CCDC18Q5T9S5 1454 aa23.1■■□□□ 1.29
CSNK1D-219ENST00000581660 TOM1O60784 492 aa23.09■■□□□ 1.29
CSNK1D-219ENST00000581660 A2ML1A8K2U0 1454 aa23.09■■□□□ 1.29
CSNK1D-219ENST00000581660 SPAG9O60271 1321 aaKnown RBP23.08■■□□□ 1.29
CSNK1D-219ENST00000581660 SYCP2Q9BX26 1530 aa23.08■■□□□ 1.29
CSNK1D-219ENST00000581660 ATP7AQ04656 1500 aa23.08■■□□□ 1.28
CSNK1D-219ENST00000581660 INO80Q9ULG1 1556 aaPredicted RBP23.07■■□□□ 1.28
CSNK1D-219ENST00000581660 A2MP01023 1474 aa23.06■■□□□ 1.28
CSNK1D-219ENST00000581660 DNMT1P26358 1616 aaKnown RBP23.06■■□□□ 1.28
CSNK1D-219ENST00000581660 UBTFP17480 764 aaKnown RBP23.05■■□□□ 1.28
CSNK1D-219ENST00000581660 PIP4K2BP78356 416 aa23.05■■□□□ 1.28
CSNK1D-219ENST00000581660 NEURL4Q96JN8 1562 aa23.05■■□□□ 1.28
CSNK1D-219ENST00000581660 SCAF1Q9H7N4 1312 aaKnown RBP23.05■■□□□ 1.28
CSNK1D-219ENST00000581660 SHANK2Q9UPX8 1470 aa23.05■■□□□ 1.28
CSNK1D-219ENST00000581660 CASKIN1Q8WXD9 1431 aa23.04■■□□□ 1.28
CSNK1D-219ENST00000581660 POLR1AO95602 1720 aaPredicted RBP23.03■■□□□ 1.28
CSNK1D-219ENST00000581660 KIAA1107Q9UPP5 1409 aa23.03■■□□□ 1.28
CSNK1D-219ENST00000581660 ALKQ9UM73 1620 aa23.01■■□□□ 1.27
CSNK1D-219ENST00000581660 GPATCH8Q9UKJ3 1502 aaKnown RBP23.01■■□□□ 1.27
CSNK1D-219ENST00000581660 PHF23Q9BUL5 403 aaPredicted RBP23■■□□□ 1.27
CSNK1D-219ENST00000581660 PLEKHH2Q8IVE3 1493 aa22.99■■□□□ 1.27
CSNK1D-219ENST00000581660 HNRNPMP52272 730 aaKnown RBP eCLIP22.98■■□□□ 1.272e-7■■■■■ 32.8
CSNK1D-219ENST00000581660 VWDEQ8N2E2 1590 aa22.97■■□□□ 1.27
CSNK1D-219ENST00000581660 GGT6Q6P531 493 aa22.97■■□□□ 1.27
CSNK1D-219ENST00000581660 ZNF777Q9ULD5 760 aaPredicted RBP22.97■■□□□ 1.27
CSNK1D-219ENST00000581660 ADGBQ8N7X0 1667 aa22.96■■□□□ 1.27
CSNK1D-219ENST00000581660 FYCO1Q9BQS8 1478 aa22.92■■□□□ 1.26
CSNK1D-219ENST00000581660 TNRQ92752 1358 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms