RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 CDC42BPAQ5VT25 1732 aa32.07■■■□□ 2.72
SS18-218ENST00000581021 TIAM1Q13009 1591 aa32.07■■■□□ 2.72
SS18-218ENST00000581021 EHBP1L1Q8N3D4 1523 aa32.06■■■□□ 2.72
SS18-218ENST00000581021 EFCAB2Q5VUJ9 269 aa32.06■■■□□ 2.72
SS18-218ENST00000581021 SCAPERQ9BY12 1400 aa32.04■■■□□ 2.72
SS18-218ENST00000581021 POGZQ7Z3K3 1410 aa32.02■■■□□ 2.72
SS18-218ENST00000581021 GPATCH8Q9UKJ3 1502 aaKnown RBP32.02■■■□□ 2.72
SS18-218ENST00000581021 ZMYM4Q5VZL5 1548 aa32■■■□□ 2.71
SS18-218ENST00000581021 KDM4FA0A1W2PPD8 638 aa32■■■□□ 2.71
SS18-218ENST00000581021 ABCC1P33527 1531 aa31.95■■■□□ 2.71
SS18-218ENST00000581021 ARHGEF40Q8TER5 1519 aa31.95■■■□□ 2.71
SS18-218ENST00000581021 ARHGEF12Q9NZN5 1544 aa31.95■■■□□ 2.71
SS18-218ENST00000581021 LRRC9Q6ZRR7 1453 aa31.92■■■□□ 2.7
SS18-218ENST00000581021 SAMD9LQ8IVG5 1584 aa31.92■■■□□ 2.7
SS18-218ENST00000581021 MAP3K1Q13233 1512 aa31.91■■■□□ 2.7
SS18-218ENST00000581021 CCNB3Q8WWL7 1395 aa31.91■■■□□ 2.7
SS18-218ENST00000581021 YEATS2Q9ULM3 1422 aa31.91■■■□□ 2.7
SS18-218ENST00000581021 NCOA2Q15596 1464 aa31.9■■■□□ 2.7
SS18-218ENST00000581021 KDM5CP41229 1560 aa31.88■■■□□ 2.69
SS18-218ENST00000581021 ITSN2Q9NZM3 1697 aa31.88■■■□□ 2.69
SS18-218ENST00000581021 ZFYVE16Q7Z3T8 1539 aa31.87■■■□□ 2.69
SS18-218ENST00000581021 TRAPPC8Q9Y2L5 1435 aa31.87■■■□□ 2.69
SS18-218ENST00000581021 KANK4Q5T7N3 995 aaPredicted RBP31.87■■■□□ 2.69
SS18-218ENST00000581021 SUPT6HQ7KZ85 1726 aaKnown RBP31.86■■■□□ 2.69
SS18-218ENST00000581021 ZNF518AQ6AHZ1 1483 aa31.86■■■□□ 2.69
SS18-218ENST00000581021 AFAP1Q8N556 730 aa31.85■■■□□ 2.69
SS18-218ENST00000581021 MAGI2Q86UL8 1455 aa31.84■■■□□ 2.69
SS18-218ENST00000581021 SYCP2Q9BX26 1530 aa31.82■■■□□ 2.68
SS18-218ENST00000581021 CFDP1Q9UEE9 299 aaPredicted RBP31.82■■■□□ 2.68
SS18-218ENST00000581021 ZNF777Q9ULD5 760 aaPredicted RBP31.82■■■□□ 2.68
SS18-218ENST00000581021 SIGLEC1Q9BZZ2 1709 aa31.82■■■□□ 2.68
SS18-218ENST00000581021 AEBP2Q6ZN18 517 aaPredicted RBP31.81■■■□□ 2.68
SS18-218ENST00000581021 HECW2Q9P2P5 1572 aa31.77■■■□□ 2.68
SS18-218ENST00000581021 ZNF644Q9H582 1327 aaPredicted RBP31.76■■■□□ 2.68
SS18-218ENST00000581021 KIAA1107Q9UPP5 1409 aa31.75■■■□□ 2.67
SS18-218ENST00000581021 MLH3Q9UHC1 1453 aa31.72■■■□□ 2.67
SS18-218ENST00000581021 HNRNPMP52272 730 aaKnown RBP eCLIP31.72■■■□□ 2.67
SS18-218ENST00000581021 PLEKHH2Q8IVE3 1493 aa31.72■■■□□ 2.67
SS18-218ENST00000581021 DIP2CQ9Y2E4 1556 aa31.71■■■□□ 2.67
SS18-218ENST00000581021 ABCA6Q8N139 1617 aa31.71■■■□□ 2.67
SS18-218ENST00000581021 ATP10AO60312 1499 aa31.69■■■□□ 2.66
SS18-218ENST00000581021 BCORL1Q5H9F3 1711 aa31.69■■■□□ 2.66
SS18-218ENST00000581021 ADAMTSL3P82987 1691 aa31.68■■■□□ 2.66
SS18-218ENST00000581021 MBD5Q9P267 1494 aa31.68■■■□□ 2.66
SS18-218ENST00000581021 KIDINS220Q9ULH0 1771 aa31.68■■■□□ 2.66
SS18-218ENST00000581021 C9orf84Q5VXU9 1444 aa31.66■■■□□ 2.66
SS18-218ENST00000581021 CAMSAP2Q08AD1 1489 aa31.65■■■□□ 2.66
SS18-218ENST00000581021 ARID4BQ4LE39 1312 aaPredicted RBP31.65■■■□□ 2.66
SS18-218ENST00000581021 APLP2Q06481 763 aa31.62■■■□□ 2.65
SS18-218ENST00000581021 INO80Q9ULG1 1556 aaPredicted RBP31.61■■■□□ 2.65
SS18-218ENST00000581021 MYOM3Q5VTT5 1437 aa31.6■■■□□ 2.65
SS18-218ENST00000581021 MADDQ8WXG6 1647 aa31.6■■■□□ 2.65
SS18-218ENST00000581021 REREQ9P2R6 1566 aa31.59■■■□□ 2.65
SS18-218ENST00000581021 ATP7AQ04656 1500 aa31.58■■■□□ 2.65
SS18-218ENST00000581021 SPAG9O60271 1321 aaKnown RBP31.57■■■□□ 2.64
SS18-218ENST00000581021 MYT1LQ9UL68 1186 aa31.57■■■□□ 2.64
SS18-218ENST00000581021 CCDC141Q6ZP82 1450 aa31.52■■■□□ 2.64
SS18-218ENST00000581021 MIA2Q96PC5 1412 aa31.51■■■□□ 2.64
SS18-218ENST00000581021 PTPRMP28827 1452 aa31.5■■■□□ 2.63
SS18-218ENST00000581021 ARHGEF5Q12774 1597 aa31.5■■■□□ 2.63
SS18-218ENST00000581021 MLECQ14165 292 aa31.49■■■□□ 2.63
SS18-218ENST00000581021 AGLP35573 1532 aa31.48■■■□□ 2.63
SS18-218ENST00000581021 RIMS1Q86UR5 1692 aaKnown RBP31.47■■■□□ 2.63
SS18-218ENST00000581021 PLXNC1O60486 1568 aa31.45■■■□□ 2.63
SS18-218ENST00000581021 RTEL1-TNFRSF6BF6WH68 1400 aa31.42■■■□□ 2.62
SS18-218ENST00000581021 FGD6Q6ZV73 1430 aa31.42■■■□□ 2.62
SS18-218ENST00000581021 PTPN23Q9H3S7 1636 aa31.42■■■□□ 2.62
SS18-218ENST00000581021 FER1L4A9Z1Z3 1794 aa31.41■■■□□ 2.62
SS18-218ENST00000581021 A2MP01023 1474 aa31.4■■■□□ 2.62
SS18-218ENST00000581021 ADGBQ8N7X0 1667 aa31.38■■■□□ 2.61
SS18-218ENST00000581021 TCOF1Q13428 1488 aaKnown RBP31.37■■■□□ 2.61
SS18-218ENST00000581021 RSPH4AQ5TD94 716 aa31.36■■■□□ 2.61
SS18-218ENST00000581021 MAST1Q9Y2H9 1570 aa31.34■■■□□ 2.61
SS18-218ENST00000581021 ABCC5O15440 1437 aa31.3■■■□□ 2.6
SS18-218ENST00000581021 PPARGC1BQ86YN6 1023 aaKnown RBP31.29■■■□□ 2.6
SS18-218ENST00000581021 CROCC2H7BZ55 1655 aa31.28■■■□□ 2.6
SS18-218ENST00000581021 DHX29Q7Z478 1369 aaKnown RBP31.27■■■□□ 2.6
SS18-218ENST00000581021 TSPY4P0CV99 314 aa31.26■■■□□ 2.59
SS18-218ENST00000581021 TSPY10P0CW01 314 aa31.26■■■□□ 2.59
SS18-218ENST00000581021 DNMT1P26358 1616 aaKnown RBP31.26■■■□□ 2.59
SS18-218ENST00000581021 DAPK1P53355 1430 aa31.24■■■□□ 2.59
SS18-218ENST00000581021 SHANK2Q9UPX8 1470 aa31.23■■■□□ 2.59
SS18-218ENST00000581021 PLPPR3Q6T4P5 718 aa31.23■■■□□ 2.59
SS18-218ENST00000581021 CEBPAP49715 358 aaPredicted RBP31.2■■■□□ 2.59
SS18-218ENST00000581021 C3P01024 1663 aa31.16■■■□□ 2.58
SS18-218ENST00000581021 LMTK3Q96Q04 1460 aa31.14■■■□□ 2.58
SS18-218ENST00000581021 GGT6Q6P531 493 aa31.14■■■□□ 2.58
SS18-218ENST00000581021 CNTLNQ9NXG0 1405 aa31.14■■■□□ 2.58
SS18-218ENST00000581021 FAM50AQ14320 339 aaKnown RBP31.13■■■□□ 2.57
SS18-218ENST00000581021 KIF3BO15066 747 aa31.12■■■□□ 2.57
SS18-218ENST00000581021 CLTCQ00610 1675 aaKnown RBP31.12■■■□□ 2.57
SS18-218ENST00000581021 MROH2AA6NES4 1674 aa31.1■■■□□ 2.57
SS18-218ENST00000581021 KIF15Q9NS87 1388 aa31.09■■■□□ 2.57
SS18-218ENST00000581021 DUOX2Q9NRD8 1548 aa31.08■■■□□ 2.57
SS18-218ENST00000581021 ESF1Q9H501 851 aaKnown RBP31.07■■■□□ 2.56
SS18-218ENST00000581021 PTPRKQ15262 1439 aa31.07■■■□□ 2.56
SS18-218ENST00000581021 RNF17Q9BXT8 1623 aaKnown RBP31.06■■■□□ 2.56
SS18-218ENST00000581021 CHIC2Q9UKJ5 165 aa31.06■■■□□ 2.56
SS18-218ENST00000581021 EIF2AK4Q9P2K8 1649 aaKnown RBP31.06■■■□□ 2.56
SS18-218ENST00000581021 RRP7BPQ9NSQ0 103 aa31.05■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms