RNA–Protein interactions for RNA: ENST00000580283.1

PPP4R1-216, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 2

Gene PPP4R1, Length 378 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-216ENST00000580283 MICALL2Q8IY33 904 aa13.82□□□□□ -0.2
PPP4R1-216ENST00000580283 GTPBP6O43824 516 aaPredicted RBP13.81□□□□□ -0.2
PPP4R1-216ENST00000580283 PPP1R37O75864 691 aa13.79□□□□□ -0.2
PPP4R1-216ENST00000580283 TMEM121BQ9BXQ6 578 aaPredicted RBP13.79□□□□□ -0.2
PPP4R1-216ENST00000580283 SPRYD3Q8NCJ5 442 aa13.77□□□□□ -0.21
PPP4R1-216ENST00000580283 SLAIN1Q8ND83 568 aa13.76□□□□□ -0.21
PPP4R1-216ENST00000580283 PAXIP1Q6ZW49 1069 aaPredicted RBP13.74□□□□□ -0.21
PPP4R1-216ENST00000580283 CFAP44Q96MT7 982 aa13.74□□□□□ -0.21
PPP4R1-216ENST00000580283 EIF4G1Q04637 1599 aaKnown RBP13.71□□□□□ -0.21
PPP4R1-216ENST00000580283 SHROOM4Q9ULL8 1493 aa13.68□□□□□ -0.22
PPP4R1-216ENST00000580283 TMC2Q8TDI7 906 aa13.62□□□□□ -0.23
PPP4R1-216ENST00000580283 TMEM92Q6UXU6 159 aa13.6□□□□□ -0.23
PPP4R1-216ENST00000580283 SCRIBQ14160 1630 aa13.57□□□□□ -0.24
PPP4R1-216ENST00000580283 SNPHO15079 494 aa13.57□□□□□ -0.24
PPP4R1-216ENST00000580283 C2orf72A6NCS6 295 aa13.56□□□□□ -0.24
PPP4R1-216ENST00000580283 PLCB2Q00722 1185 aa13.53□□□□□ -0.24
PPP4R1-216ENST00000580283 DCAF1Q9Y4B6 1507 aa13.53□□□□□ -0.24
PPP4R1-216ENST00000580283 KIF3CO14782 793 aa13.52□□□□□ -0.25
PPP4R1-216ENST00000580283 ZCCHC6Q5VYS8 1495 aaKnown RBP13.51□□□□□ -0.25
PPP4R1-216ENST00000580283 PDE4AP27815 886 aa13.51□□□□□ -0.25
PPP4R1-216ENST00000580283 GPHNQ9NQX3 736 aaPredicted RBP13.51□□□□□ -0.25
PPP4R1-216ENST00000580283 CADPS2Q86UW7 1296 aa13.48□□□□□ -0.25
PPP4R1-216ENST00000580283 FAM163AQ96GL9 167 aaPredicted RBP13.48□□□□□ -0.25
PPP4R1-216ENST00000580283 CRISPLD2Q9H0B8 497 aa13.48□□□□□ -0.25
PPP4R1-216ENST00000580283 DOK7Q18PE1 504 aa13.47□□□□□ -0.25
PPP4R1-216ENST00000580283 NCKAP5LQ9HCH0 1330 aa13.45□□□□□ -0.26
PPP4R1-216ENST00000580283 LARP6Q9BRS8 491 aaKnown RBP13.45□□□□□ -0.26
PPP4R1-216ENST00000580283 FOXK1P85037 733 aa13.44□□□□□ -0.26
PPP4R1-216ENST00000580283 ZNF710Q8N1W2 664 aa13.44□□□□□ -0.26
PPP4R1-216ENST00000580283 RIMBP2O15034 1052 aa13.43□□□□□ -0.26
PPP4R1-216ENST00000580283 DSG2Q14126 1118 aa13.42□□□□□ -0.26
PPP4R1-216ENST00000580283 PLPP6Q8IY26 295 aa13.42□□□□□ -0.26
PPP4R1-216ENST00000580283 TSHZ2Q9NRE2 1034 aa13.42□□□□□ -0.26
PPP4R1-216ENST00000580283 HOXB3P14651 431 aaPredicted RBP13.41□□□□□ -0.26
PPP4R1-216ENST00000580283 DDX27Q96GQ7 796 aaKnown RBP13.41□□□□□ -0.26
PPP4R1-216ENST00000580283 PPP1R15BQ5SWA1 713 aa13.4□□□□□ -0.26
PPP4R1-216ENST00000580283 HAP1P54257 671 aaPredicted RBP13.38□□□□□ -0.27
PPP4R1-216ENST00000580283 ST18O60284 1047 aa13.37□□□□□ -0.27
PPP4R1-216ENST00000580283 MFSD10Q14728 455 aa13.36□□□□□ -0.27
PPP4R1-216ENST00000580283 WDR70Q9NW82 654 aa13.35□□□□□ -0.27
PPP4R1-216ENST00000580283 ZSWIM6Q9HCJ5 1215 aa13.34□□□□□ -0.27
PPP4R1-216ENST00000580283 CUX2O14529 1486 aa13.34□□□□□ -0.27
PPP4R1-216ENST00000580283 SLC34A2O95436 690 aa13.32□□□□□ -0.28
PPP4R1-216ENST00000580283 LCE2DQ5TA82 110 aaPredicted RBP13.29□□□□□ -0.28
PPP4R1-216ENST00000580283 TBC1D12O60347 775 aa13.27□□□□□ -0.29
PPP4R1-216ENST00000580283 HOXB1P14653 301 aaPredicted RBP13.27□□□□□ -0.29
PPP4R1-216ENST00000580283 ARSIQ5FYB1 569 aa13.27□□□□□ -0.29
PPP4R1-216ENST00000580283 UPF1Q92900 1129 aaKnown RBP eCLIP13.26□□□□□ -0.29
PPP4R1-216ENST00000580283 PCDHGA4Q9Y5G9 962 aa13.26□□□□□ -0.29
PPP4R1-216ENST00000580283 GPR153Q6NV75 609 aa13.25□□□□□ -0.29
PPP4R1-216ENST00000580283 PTCD2Q8WV60 388 aaKnown RBP13.25□□□□□ -0.29
PPP4R1-216ENST00000580283 MARVELD3Q96A59 401 aa13.25□□□□□ -0.29
PPP4R1-216ENST00000580283 EMP3P54852 163 aa13.24□□□□□ -0.29
PPP4R1-216ENST00000580283 OXER1Q8TDS5 423 aa13.21□□□□□ -0.29
PPP4R1-216ENST00000580283 KHSRPQ92945 711 aaKnown RBP eCLIP13.21□□□□□ -0.294e-7■□□□□ 10
PPP4R1-216ENST00000580283 POTEMA6NI47 508 aa13.2□□□□□ -0.3
PPP4R1-216ENST00000580283 E2F4Q16254 413 aa13.2□□□□□ -0.3
PPP4R1-216ENST00000580283 POTEGQ6S5H5 508 aa13.2□□□□□ -0.3
PPP4R1-216ENST00000580283 ERCC6Q03468 1493 aa13.19□□□□□ -0.3
PPP4R1-216ENST00000580283 NUDT7P0C024 238 aa13.19□□□□□ -0.3
PPP4R1-216ENST00000580283 CAMK2BQ13554 666 aa13.19□□□□□ -0.3
PPP4R1-216ENST00000580283 MAP3K9P80192 1104 aa13.18□□□□□ -0.3
PPP4R1-216ENST00000580283 EMILIN3Q9NT22 766 aa13.18□□□□□ -0.3
PPP4R1-216ENST00000580283 ERBB3P21860 1342 aa13.16□□□□□ -0.3
PPP4R1-216ENST00000580283 FAM205CA6NFA0 338 aa13.15□□□□□ -0.3
PPP4R1-216ENST00000580283 ZNF316A6NFI3 1004 aaPredicted RBP13.15□□□□□ -0.3
PPP4R1-216ENST00000580283 NCAPD3P42695 1498 aa13.12□□□□□ -0.31
PPP4R1-216ENST00000580283 NESP48681 1621 aa13.12□□□□□ -0.31
PPP4R1-216ENST00000580283 DPYSL4O14531 572 aa13.11□□□□□ -0.31
PPP4R1-216ENST00000580283 VSIG10Q8N0Z9 540 aa13.11□□□□□ -0.31
PPP4R1-216ENST00000580283 HS3ST6Q96QI5 342 aa13.1□□□□□ -0.31
PPP4R1-216ENST00000580283 EVI5O60447 810 aa13.09□□□□□ -0.31
PPP4R1-216ENST00000580283 LHX6Q9UPM6 363 aa13.09□□□□□ -0.31
PPP4R1-216ENST00000580283 VARS2Q5ST30 1063 aaKnown RBP13.08□□□□□ -0.32
PPP4R1-216ENST00000580283 P3H3Q8IVL6 736 aa13.07□□□□□ -0.32
PPP4R1-216ENST00000580283 KDM2AQ9Y2K7 1162 aa13.06□□□□□ -0.32
PPP4R1-216ENST00000580283 KDM4FA0A1W2PPD8 638 aa13.05□□□□□ -0.32
PPP4R1-216ENST00000580283 PSDA5PKW4 1024 aaPredicted RBP13.05□□□□□ -0.32
PPP4R1-216ENST00000580283 THOC2Q8NI27 1593 aaKnown RBP13.03□□□□□ -0.32
PPP4R1-216ENST00000580283 KCNV2Q8TDN2 545 aa13.03□□□□□ -0.32
PPP4R1-216ENST00000580283 ATAD2BQ9ULI0 1458 aa13.03□□□□□ -0.32
PPP4R1-216ENST00000580283 ARIH1Q9Y4X5 557 aaPredicted RBP13.02□□□□□ -0.33
PPP4R1-216ENST00000580283 SPDYE16A6NNV3 312 aaPredicted RBP13.01□□□□□ -0.33
PPP4R1-216ENST00000580283 ARHGEF1Q92888 912 aaKnown RBP13.01□□□□□ -0.33
PPP4R1-216ENST00000580283 ANO8Q9HCE9 1232 aaPredicted RBP13.01□□□□□ -0.33
PPP4R1-216ENST00000580283 POTEB3A0JP26 581 aa13□□□□□ -0.33
PPP4R1-216ENST00000580283 POTEBQ6S5H4 581 aa13□□□□□ -0.33
PPP4R1-216ENST00000580283 CDAN1Q8IWY9 1227 aa13□□□□□ -0.33
PPP4R1-216ENST00000580283 PDIA6Q15084 440 aa12.99□□□□□ -0.33
PPP4R1-216ENST00000580283 PPP4R3BQ5MIZ7 849 aa12.99□□□□□ -0.33
PPP4R1-216ENST00000580283 ZNF454Q8N9F8 522 aa12.98□□□□□ -0.33
PPP4R1-216ENST00000580283 PCDH10Q9P2E7 1040 aa12.98□□□□□ -0.33
PPP4R1-216ENST00000580283 ZNF687Q8N1G0 1237 aa12.97□□□□□ -0.33
PPP4R1-216ENST00000580283 HMGXB3Q12766 1538 aa12.96□□□□□ -0.33
PPP4R1-216ENST00000580283 JPH4Q96JJ6 628 aa12.95□□□□□ -0.34
PPP4R1-216ENST00000580283 KIF21AQ7Z4S6 1674 aa12.95□□□□□ -0.34
PPP4R1-216ENST00000580283 FOSBP53539 338 aa12.93□□□□□ -0.34
PPP4R1-216ENST00000580283 SMARCA4P51532 1647 aa12.92□□□□□ -0.34
PPP4R1-216ENST00000580283 SMARCA2P51531 1590 aa12.91□□□□□ -0.34
PPP4R1-216ENST00000580283 PTGER2P43116 358 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms