RNA–Protein interactions for RNA: ENST00000577901.5

VAPA-204, Transcript of VAMP associated protein A, humanhuman

TSL 2

Gene VAPA, Length 917 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-204ENST00000577901 POGZQ7Z3K3 1410 aa26.26■■□□□ 1.79
VAPA-204ENST00000577901 PCF11O94913 1555 aaKnown RBP26.25■■□□□ 1.79
VAPA-204ENST00000577901 SCAPERQ9BY12 1400 aa26.24■■□□□ 1.79
VAPA-204ENST00000577901 LMTK3Q96Q04 1460 aa26.23■■□□□ 1.79
VAPA-204ENST00000577901 CDK11AQ9UQ88 783 aaPredicted RBP26.22■■□□□ 1.79
VAPA-204ENST00000577901 SIGLEC1Q9BZZ2 1709 aa26.2■■□□□ 1.79
VAPA-204ENST00000577901 EFCAB2Q5VUJ9 269 aa26.19■■□□□ 1.78
VAPA-204ENST00000577901 PLPPR3Q6T4P5 718 aa26.18■■□□□ 1.78
VAPA-204ENST00000577901 MYO5CQ9NQX4 1742 aa26.17■■□□□ 1.78
VAPA-204ENST00000577901 FBXO41Q8TF61 875 aa26.17■■□□□ 1.78
VAPA-204ENST00000577901 MLECQ14165 292 aa26.16■■□□□ 1.78
VAPA-204ENST00000577901 KIF14Q15058 1648 aa26.15■■□□□ 1.78
VAPA-204ENST00000577901 TROQ12816 1431 aaPredicted RBP26.14■■□□□ 1.77
VAPA-204ENST00000577901 ATP10AO60312 1499 aa26.12■■□□□ 1.77
VAPA-204ENST00000577901 CLIP1P30622 1438 aa26.11■■□□□ 1.77
VAPA-204ENST00000577901 HSPA2P54652 639 aa26.1■■□□□ 1.77
VAPA-204ENST00000577901 C9orf84Q5VXU9 1444 aa26.1■■□□□ 1.77
VAPA-204ENST00000577901 ARHGAP5Q13017 1502 aa26.09■■□□□ 1.77
VAPA-204ENST00000577901 FER1L4A9Z1Z3 1794 aa26.08■■□□□ 1.77
VAPA-204ENST00000577901 ZNF518AQ6AHZ1 1483 aa26.07■■□□□ 1.76
VAPA-204ENST00000577901 LRRIQ1Q96JM4 1722 aa26.06■■□□□ 1.76
VAPA-204ENST00000577901 ARHGEF12Q9NZN5 1544 aa26.05■■□□□ 1.76
VAPA-204ENST00000577901 AFAP1Q8N556 730 aa26.04■■□□□ 1.76
VAPA-204ENST00000577901 KDM5CP41229 1560 aa26.02■■□□□ 1.76
VAPA-204ENST00000577901 MYT1LQ9UL68 1186 aa26■■□□□ 1.75
VAPA-204ENST00000577901 CASKIN1Q8WXD9 1431 aa25.99■■□□□ 1.75
VAPA-204ENST00000577901 CCDC18Q5T9S5 1454 aa25.98■■□□□ 1.75
VAPA-204ENST00000577901 CDC42BPBQ9Y5S2 1711 aa25.97■■□□□ 1.75
VAPA-204ENST00000577901 CEBPAP49715 358 aaPredicted RBP25.95■■□□□ 1.74
VAPA-204ENST00000577901 DIP2CQ9Y2E4 1556 aa25.95■■□□□ 1.74
VAPA-204ENST00000577901 PREX2Q70Z35 1606 aa25.94■■□□□ 1.74
VAPA-204ENST00000577901 MLH3Q9UHC1 1453 aa25.92■■□□□ 1.74
VAPA-204ENST00000577901 REREQ9P2R6 1566 aa25.91■■□□□ 1.74
VAPA-204ENST00000577901 ABCC1P33527 1531 aa25.91■■□□□ 1.74
VAPA-204ENST00000577901 PREX1Q8TCU6 1659 aa25.9■■□□□ 1.74
VAPA-204ENST00000577901 TRAPPC8Q9Y2L5 1435 aa25.9■■□□□ 1.74
VAPA-204ENST00000577901 ABCA6Q8N139 1617 aa25.9■■□□□ 1.74
VAPA-204ENST00000577901 FYCO1Q9BQS8 1478 aa25.87■■□□□ 1.73
VAPA-204ENST00000577901 ITSN2Q9NZM3 1697 aa25.86■■□□□ 1.73
VAPA-204ENST00000577901 CERKQ8TCT0 537 aa25.84■■□□□ 1.73
VAPA-204ENST00000577901 AGLP35573 1532 aa25.83■■□□□ 1.73
VAPA-204ENST00000577901 CDC42BPAQ5VT25 1732 aa25.83■■□□□ 1.73
VAPA-204ENST00000577901 UHRF1BP1Q6BDS2 1440 aa25.83■■□□□ 1.73
VAPA-204ENST00000577901 ESF1Q9H501 851 aaKnown RBP25.8■■□□□ 1.72
VAPA-204ENST00000577901 ZNF777Q9ULD5 760 aaPredicted RBP25.79■■□□□ 1.72
VAPA-204ENST00000577901 KIDINS220Q9ULH0 1771 aa25.79■■□□□ 1.72
VAPA-204ENST00000577901 C3P01024 1663 aa25.77■■□□□ 1.72
VAPA-204ENST00000577901 DMRT2Q9Y5R5 561 aa25.77■■□□□ 1.72
VAPA-204ENST00000577901 GPATCH8Q9UKJ3 1502 aaKnown RBP25.76■■□□□ 1.71
VAPA-204ENST00000577901 SAMD9LQ8IVG5 1584 aa25.76■■□□□ 1.71
VAPA-204ENST00000577901 STRCQ7RTU9 1775 aa25.74■■□□□ 1.71
VAPA-204ENST00000577901 SETD1BQ9UPS6 1966 aaKnown RBP25.73■■□□□ 1.71
VAPA-204ENST00000577901 SYCP2Q9BX26 1530 aa25.73■■□□□ 1.71
VAPA-204ENST00000577901 CNTLNQ9NXG0 1405 aa25.71■■□□□ 1.71
VAPA-204ENST00000577901 SPAG9O60271 1321 aaKnown RBP25.71■■□□□ 1.71
VAPA-204ENST00000577901 HNRNPMP52272 730 aaKnown RBP eCLIP25.71■■□□□ 1.717e-9■■■■□ 24.6
VAPA-204ENST00000577901 CFDP1Q9UEE9 299 aaPredicted RBP25.68■■□□□ 1.7
VAPA-204ENST00000577901 KIAA1107Q9UPP5 1409 aa25.67■■□□□ 1.7
VAPA-204ENST00000577901 CCNB3Q8WWL7 1395 aa25.67■■□□□ 1.7
VAPA-204ENST00000577901 PLEKHH2Q8IVE3 1493 aa25.66■■□□□ 1.7
VAPA-204ENST00000577901 MTUS2Q5JR59 1369 aa25.65■■□□□ 1.7
VAPA-204ENST00000577901 PTPRTO14522 1441 aa25.64■■□□□ 1.7
VAPA-204ENST00000577901 ATP7AQ04656 1500 aa25.64■■□□□ 1.7
VAPA-204ENST00000577901 SUPT6HQ7KZ85 1726 aaKnown RBP25.62■■□□□ 1.69
VAPA-204ENST00000577901 MROH2AA6NES4 1674 aa25.61■■□□□ 1.69
VAPA-204ENST00000577901 LOC105371045A0A1W2PR82 267 aa25.61■■□□□ 1.69
VAPA-204ENST00000577901 INO80Q9ULG1 1556 aaPredicted RBP25.61■■□□□ 1.69
VAPA-204ENST00000577901 ZMYM3Q14202 1370 aa25.6■■□□□ 1.69
VAPA-204ENST00000577901 NPATQ14207 1427 aa25.6■■□□□ 1.69
VAPA-204ENST00000577901 A2MP01023 1474 aa25.6■■□□□ 1.69
VAPA-204ENST00000577901 PLXNC1O60486 1568 aa25.58■■□□□ 1.69
VAPA-204ENST00000577901 NCOA1Q15788 1441 aa25.58■■□□□ 1.69
VAPA-204ENST00000577901 TIAM1Q13009 1591 aa25.54■■□□□ 1.68
VAPA-204ENST00000577901 ZNF644Q9H582 1327 aaPredicted RBP25.54■■□□□ 1.68
VAPA-204ENST00000577901 CLTCQ00610 1675 aaKnown RBP25.54■■□□□ 1.68
VAPA-204ENST00000577901 CEP162Q5TB80 1403 aa25.54■■□□□ 1.68
VAPA-204ENST00000577901 GGT6Q6P531 493 aa25.53■■□□□ 1.68
VAPA-204ENST00000577901 EHBP1L1Q8N3D4 1523 aa25.53■■□□□ 1.68
VAPA-204ENST00000577901 CAMSAP1Q5T5Y3 1602 aa25.52■■□□□ 1.68
VAPA-204ENST00000577901 MBD5Q9P267 1494 aa25.5■■□□□ 1.67
VAPA-204ENST00000577901 LTBP4Q8N2S1 1624 aa25.49■■□□□ 1.67
VAPA-204ENST00000577901 ADGBQ8N7X0 1667 aa25.48■■□□□ 1.67
VAPA-204ENST00000577901 PTPRKQ15262 1439 aa25.47■■□□□ 1.67
VAPA-204ENST00000577901 PPP6R1Q9UPN7 881 aa25.47■■□□□ 1.67
VAPA-204ENST00000577901 MYO3AQ8NEV4 1616 aa25.45■■□□□ 1.67
VAPA-204ENST00000577901 NCKAP5LQ9HCH0 1330 aa25.45■■□□□ 1.66
VAPA-204ENST00000577901 RTEL1-TNFRSF6BF6WH68 1400 aa25.45■■□□□ 1.66
VAPA-204ENST00000577901 ZNF142P52746 1687 aaPredicted RBP25.42■■□□□ 1.66
VAPA-204ENST00000577901 IQSEC2Q5JU85 1478 aa25.42■■□□□ 1.66
VAPA-204ENST00000577901 CEP170BQ9Y4F5 1589 aaPredicted RBP25.41■■□□□ 1.66
VAPA-204ENST00000577901 DHX29Q7Z478 1369 aaKnown RBP25.41■■□□□ 1.66
VAPA-204ENST00000577901 PLA2R1Q13018 1463 aa25.4■■□□□ 1.66
VAPA-204ENST00000577901 PKD2Q13563 968 aa25.39■■□□□ 1.66
VAPA-204ENST00000577901 NCOA2Q15596 1464 aa25.38■■□□□ 1.65
VAPA-204ENST00000577901 CCDC141Q6ZP82 1450 aa25.37■■□□□ 1.65
VAPA-204ENST00000577901 CAMSAP2Q08AD1 1489 aa25.36■■□□□ 1.65
VAPA-204ENST00000577901 TCOF1Q13428 1488 aaKnown RBP25.36■■□□□ 1.65
VAPA-204ENST00000577901 DISP3Q9P2K9 1392 aa25.36■■□□□ 1.65
VAPA-204ENST00000577901 ZNF335Q9H4Z2 1342 aaPredicted RBP25.36■■□□□ 1.65
VAPA-204ENST00000577901 KIF3BO15066 747 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms