RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 EFCAB5A4FU69 1503 aa16.28■□□□□ 0.2
SS18-207ENST00000577636 CDK13Q14004 1512 aaKnown RBP16.28■□□□□ 0.2
SS18-207ENST00000577636 EEA1Q15075 1411 aa16.28■□□□□ 0.2
SS18-207ENST00000577636 TTC37Q6PGP7 1564 aa16.27■□□□□ 0.2
SS18-207ENST00000577636 MAGI2Q86UL8 1455 aa16.26■□□□□ 0.19
SS18-207ENST00000577636 PLCH2O75038 1416 aa16.26■□□□□ 0.19
SS18-207ENST00000577636 HECW1Q76N89 1606 aa16.26■□□□□ 0.19
SS18-207ENST00000577636 CDK11AQ9UQ88 783 aaPredicted RBP16.24■□□□□ 0.19
SS18-207ENST00000577636 SIGLEC1Q9BZZ2 1709 aa16.24■□□□□ 0.19
SS18-207ENST00000577636 ZMYM4Q5VZL5 1548 aa16.24■□□□□ 0.19
SS18-207ENST00000577636 AFAP1Q8N556 730 aa16.23■□□□□ 0.19
SS18-207ENST00000577636 ATP10AO60312 1499 aa16.22■□□□□ 0.19
SS18-207ENST00000577636 C9orf84Q5VXU9 1444 aa16.2■□□□□ 0.18
SS18-207ENST00000577636 LOC105371045A0A1W2PR82 267 aa16.2■□□□□ 0.18
SS18-207ENST00000577636 DMRT2Q9Y5R5 561 aa16.2■□□□□ 0.18
SS18-207ENST00000577636 FER1L4A9Z1Z3 1794 aa16.2■□□□□ 0.18
SS18-207ENST00000577636 ESF1Q9H501 851 aaKnown RBP16.18■□□□□ 0.18
SS18-207ENST00000577636 DISP3Q9P2K9 1392 aa16.17■□□□□ 0.18
SS18-207ENST00000577636 ARHGEF12Q9NZN5 1544 aa16.15■□□□□ 0.18
SS18-207ENST00000577636 FMN1Q68DA7 1419 aa16.14■□□□□ 0.17
SS18-207ENST00000577636 UHRF1BP1Q6BDS2 1440 aa16.14■□□□□ 0.17
SS18-207ENST00000577636 ILDR2Q71H61 639 aa16.14■□□□□ 0.17
SS18-207ENST00000577636 ARHGAP5Q13017 1502 aa16.14■□□□□ 0.17
SS18-207ENST00000577636 ZNF518AQ6AHZ1 1483 aa16.12■□□□□ 0.17
SS18-207ENST00000577636 MYO5CQ9NQX4 1742 aa16.11■□□□□ 0.17
SS18-207ENST00000577636 CLIP1P30622 1438 aa16.11■□□□□ 0.17
SS18-207ENST00000577636 TROQ12816 1431 aaPredicted RBP16.11■□□□□ 0.17
SS18-207ENST00000577636 KIF14Q15058 1648 aa16.1■□□□□ 0.17
SS18-207ENST00000577636 ARHGAP35Q9NRY4 1499 aa16.1■□□□□ 0.17
SS18-207ENST00000577636 PREX1Q8TCU6 1659 aa16.09■□□□□ 0.17
SS18-207ENST00000577636 ZNF777Q9ULD5 760 aaPredicted RBP16.08■□□□□ 0.16
SS18-207ENST00000577636 STRCQ7RTU9 1775 aa16.05■□□□□ 0.16
SS18-207ENST00000577636 TRAPPC8Q9Y2L5 1435 aa16.05■□□□□ 0.16
SS18-207ENST00000577636 SOCS7O14512 581 aa16.05■□□□□ 0.16
SS18-207ENST00000577636 SETD1BQ9UPS6 1966 aaKnown RBP16.04■□□□□ 0.16
SS18-207ENST00000577636 KDM5CP41229 1560 aa16.03■□□□□ 0.16
SS18-207ENST00000577636 DIP2CQ9Y2E4 1556 aa16.03■□□□□ 0.16
SS18-207ENST00000577636 PTPRTO14522 1441 aa16.02■□□□□ 0.16
SS18-207ENST00000577636 MLH3Q9UHC1 1453 aa16.02■□□□□ 0.15
SS18-207ENST00000577636 NCKAP5LQ9HCH0 1330 aa16■□□□□ 0.15
SS18-207ENST00000577636 HNRNPMP52272 730 aaKnown RBP eCLIP16■□□□□ 0.15
SS18-207ENST00000577636 ABCA6Q8N139 1617 aa15.99■□□□□ 0.15
SS18-207ENST00000577636 C3P01024 1663 aa15.99■□□□□ 0.15
SS18-207ENST00000577636 CDC42BPBQ9Y5S2 1711 aa15.98■□□□□ 0.15
SS18-207ENST00000577636 SPAG9O60271 1321 aaKnown RBP15.97■□□□□ 0.15
SS18-207ENST00000577636 GGT6Q6P531 493 aa15.96■□□□□ 0.15
SS18-207ENST00000577636 ZMYM3Q14202 1370 aa15.96■□□□□ 0.15
SS18-207ENST00000577636 REREQ9P2R6 1566 aa15.96■□□□□ 0.14
SS18-207ENST00000577636 CNTLNQ9NXG0 1405 aa15.95■□□□□ 0.14
SS18-207ENST00000577636 AGLP35573 1532 aa15.95■□□□□ 0.14
SS18-207ENST00000577636 UBAP1LF5GYI3 381 aa15.95■□□□□ 0.14
SS18-207ENST00000577636 ZNF335Q9H4Z2 1342 aaPredicted RBP15.94■□□□□ 0.14
SS18-207ENST00000577636 NCOA1Q15788 1441 aa15.94■□□□□ 0.14
SS18-207ENST00000577636 ABCC1P33527 1531 aa15.94■□□□□ 0.14
SS18-207ENST00000577636 LRRIQ1Q96JM4 1722 aa15.94■□□□□ 0.14
SS18-207ENST00000577636 CASKIN1Q8WXD9 1431 aa15.93■□□□□ 0.14
SS18-207ENST00000577636 CFDP1Q9UEE9 299 aaPredicted RBP15.92■□□□□ 0.14
SS18-207ENST00000577636 PREX2Q70Z35 1606 aa15.92■□□□□ 0.14
SS18-207ENST00000577636 LTBP4Q8N2S1 1624 aa15.92■□□□□ 0.14
SS18-207ENST00000577636 CCDC18Q5T9S5 1454 aa15.91■□□□□ 0.14
SS18-207ENST00000577636 CAMSAP1Q5T5Y3 1602 aa15.91■□□□□ 0.14
SS18-207ENST00000577636 KIDINS220Q9ULH0 1771 aa15.91■□□□□ 0.14
SS18-207ENST00000577636 ITSN2Q9NZM3 1697 aa15.91■□□□□ 0.14
SS18-207ENST00000577636 SPATA31D1Q6ZQQ2 1576 aa15.91■□□□□ 0.14
SS18-207ENST00000577636 SAMD9LQ8IVG5 1584 aa15.88■□□□□ 0.13
SS18-207ENST00000577636 PKD2Q13563 968 aa15.88■□□□□ 0.13
SS18-207ENST00000577636 SCAF1Q9H7N4 1312 aaKnown RBP15.88■□□□□ 0.13
SS18-207ENST00000577636 NPATQ14207 1427 aa15.87■□□□□ 0.13
SS18-207ENST00000577636 SUPT6HQ7KZ85 1726 aaKnown RBP15.87■□□□□ 0.13
SS18-207ENST00000577636 SYCP2Q9BX26 1530 aa15.87■□□□□ 0.13
SS18-207ENST00000577636 CDC42BPAQ5VT25 1732 aa15.86■□□□□ 0.13
SS18-207ENST00000577636 GPATCH8Q9UKJ3 1502 aaKnown RBP15.86■□□□□ 0.13
SS18-207ENST00000577636 CCNB3Q8WWL7 1395 aa15.86■□□□□ 0.13
SS18-207ENST00000577636 IQSEC2Q5JU85 1478 aa15.85■□□□□ 0.13
SS18-207ENST00000577636 PPP6R1Q9UPN7 881 aa15.85■□□□□ 0.13
SS18-207ENST00000577636 PIP4K2BP78356 416 aa15.84■□□□□ 0.13
SS18-207ENST00000577636 CEP162Q5TB80 1403 aa15.84■□□□□ 0.13
SS18-207ENST00000577636 A2MP01023 1474 aa15.84■□□□□ 0.13
SS18-207ENST00000577636 ZNF644Q9H582 1327 aaPredicted RBP15.83■□□□□ 0.12
SS18-207ENST00000577636 MTUS2Q5JR59 1369 aa15.82■□□□□ 0.12
SS18-207ENST00000577636 CLTCQ00610 1675 aaKnown RBP15.82■□□□□ 0.12
SS18-207ENST00000577636 ATP7AQ04656 1500 aa15.81■□□□□ 0.12
SS18-207ENST00000577636 PTPRKQ15262 1439 aa15.81■□□□□ 0.12
SS18-207ENST00000577636 FYCO1Q9BQS8 1478 aa15.81■□□□□ 0.12
SS18-207ENST00000577636 KIAA1107Q9UPP5 1409 aa15.8■□□□□ 0.12
SS18-207ENST00000577636 MROH2AA6NES4 1674 aa15.79■□□□□ 0.12
SS18-207ENST00000577636 PLEKHH2Q8IVE3 1493 aa15.79■□□□□ 0.12
SS18-207ENST00000577636 FBXO31Q5XUX0 539 aaPredicted RBP15.79■□□□□ 0.12
SS18-207ENST00000577636 KIF3BO15066 747 aa15.78■□□□□ 0.12
SS18-207ENST00000577636 HSPA1LP34931 641 aa15.78■□□□□ 0.12
SS18-207ENST00000577636 TOM1O60784 492 aa15.77■□□□□ 0.12
SS18-207ENST00000577636 PLA2R1Q13018 1463 aa15.77■□□□□ 0.11
SS18-207ENST00000577636 CEP170BQ9Y4F5 1589 aaPredicted RBP15.76■□□□□ 0.11
SS18-207ENST00000577636 SENP3Q9H4L4 574 aaPredicted RBP15.76■□□□□ 0.11
SS18-207ENST00000577636 MYO3AQ8NEV4 1616 aa15.76■□□□□ 0.11
SS18-207ENST00000577636 TCOF1Q13428 1488 aaKnown RBP15.75■□□□□ 0.11
SS18-207ENST00000577636 WASHC2CQ9Y4E1 1318 aa15.73■□□□□ 0.11
SS18-207ENST00000577636 ANKLE2Q86XL3 938 aa15.73■□□□□ 0.11
SS18-207ENST00000577636 PLXNC1O60486 1568 aa15.73■□□□□ 0.11
SS18-207ENST00000577636 INO80Q9ULG1 1556 aaPredicted RBP15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms