RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 CRISPLD2Q9H0B8 497 aa13.7□□□□□ -0.22
NUP88-213ENST00000576862 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.68□□□□□ -0.22
NUP88-213ENST00000576862 KIF3CO14782 793 aa13.67□□□□□ -0.22
NUP88-213ENST00000576862 MAMSTRQ6ZN01 415 aa13.67□□□□□ -0.22
NUP88-213ENST00000576862 OTUD5Q96G74 571 aa13.67□□□□□ -0.22
NUP88-213ENST00000576862 KDM2AQ9Y2K7 1162 aa13.67□□□□□ -0.22
NUP88-213ENST00000576862 SCUBE2Q9NQ36 999 aa13.66□□□□□ -0.22
NUP88-213ENST00000576862 GPHNQ9NQX3 736 aaPredicted RBP13.65□□□□□ -0.22
NUP88-213ENST00000576862 C2orf72A6NCS6 295 aa13.64□□□□□ -0.23
NUP88-213ENST00000576862 PDE4AP27815 886 aa13.64□□□□□ -0.23
NUP88-213ENST00000576862 VSIG10Q8N0Z9 540 aa13.63□□□□□ -0.23
NUP88-213ENST00000576862 TMC2Q8TDI7 906 aa13.62□□□□□ -0.23
NUP88-213ENST00000576862 MFSD10Q14728 455 aa13.61□□□□□ -0.23
NUP88-213ENST00000576862 LARP6Q9BRS8 491 aaKnown RBP13.61□□□□□ -0.23
NUP88-213ENST00000576862 SLAIN1Q8ND83 568 aa13.59□□□□□ -0.23
NUP88-213ENST00000576862 DSG2Q14126 1118 aa13.57□□□□□ -0.24
NUP88-213ENST00000576862 FOXK1P85037 733 aa13.56□□□□□ -0.24
NUP88-213ENST00000576862 DDX27Q96GQ7 796 aaKnown RBP13.56□□□□□ -0.24
NUP88-213ENST00000576862 PPP1R15BQ5SWA1 713 aa13.53□□□□□ -0.24
NUP88-213ENST00000576862 PLPP6Q8IY26 295 aa13.51□□□□□ -0.25
NUP88-213ENST00000576862 WDR70Q9NW82 654 aa13.5□□□□□ -0.25
NUP88-213ENST00000576862 CAMK2BQ13554 666 aa13.45□□□□□ -0.26
NUP88-213ENST00000576862 HOXB3P14651 431 aaPredicted RBP13.43□□□□□ -0.26
NUP88-213ENST00000576862 E2F4Q16254 413 aa13.43□□□□□ -0.26
NUP88-213ENST00000576862 EMILIN3Q9NT22 766 aa13.4□□□□□ -0.26
NUP88-213ENST00000576862 KCNV2Q8TDN2 545 aa13.39□□□□□ -0.27
NUP88-213ENST00000576862 SLC34A2O95436 690 aa13.38□□□□□ -0.27
NUP88-213ENST00000576862 OXER1Q8TDS5 423 aa13.35□□□□□ -0.27
NUP88-213ENST00000576862 DOK7Q18PE1 504 aa13.34□□□□□ -0.27
NUP88-213ENST00000576862 PTCD2Q8WV60 388 aaKnown RBP13.34□□□□□ -0.27
NUP88-213ENST00000576862 SNPHO15079 494 aa13.32□□□□□ -0.28
NUP88-213ENST00000576862 P3H3Q8IVL6 736 aa13.32□□□□□ -0.28
NUP88-213ENST00000576862 UPF1Q92900 1129 aaKnown RBP eCLIP13.32□□□□□ -0.28
NUP88-213ENST00000576862 ARIH1Q9Y4X5 557 aaPredicted RBP13.32□□□□□ -0.28
NUP88-213ENST00000576862 DPYSL4O14531 572 aa13.29□□□□□ -0.28
NUP88-213ENST00000576862 ARHGEF1Q92888 912 aaKnown RBP13.29□□□□□ -0.28
NUP88-213ENST00000576862 PCDHGA4Q9Y5G9 962 aa13.29□□□□□ -0.28
NUP88-213ENST00000576862 GPR153Q6NV75 609 aa13.27□□□□□ -0.29
NUP88-213ENST00000576862 ZNF710Q8N1W2 664 aa13.26□□□□□ -0.29
NUP88-213ENST00000576862 ZSWIM6Q9HCJ5 1215 aa13.26□□□□□ -0.29
NUP88-213ENST00000576862 RIMBP2O15034 1052 aa13.25□□□□□ -0.29
NUP88-213ENST00000576862 ARSIQ5FYB1 569 aa13.25□□□□□ -0.29
NUP88-213ENST00000576862 KHSRPQ92945 711 aaKnown RBP eCLIP13.25□□□□□ -0.29
NUP88-213ENST00000576862 MAP3K9P80192 1104 aa13.24□□□□□ -0.29
NUP88-213ENST00000576862 KDM4FA0A1W2PPD8 638 aa13.23□□□□□ -0.29
NUP88-213ENST00000576862 ST18O60284 1047 aa13.22□□□□□ -0.29
NUP88-213ENST00000576862 TBC1D12O60347 775 aa13.22□□□□□ -0.29
NUP88-213ENST00000576862 LCE2DQ5TA82 110 aaPredicted RBP13.21□□□□□ -0.29
NUP88-213ENST00000576862 HOXB1P14653 301 aaPredicted RBP13.2□□□□□ -0.3
NUP88-213ENST00000576862 PDIA6Q15084 440 aa13.2□□□□□ -0.3
NUP88-213ENST00000576862 FAM163AQ96GL9 167 aaPredicted RBP13.2□□□□□ -0.3
NUP88-213ENST00000576862 EVI5O60447 810 aa13.19□□□□□ -0.3
NUP88-213ENST00000576862 NUDT7P0C024 238 aa13.18□□□□□ -0.3
NUP88-213ENST00000576862 ANO8Q9HCE9 1232 aaPredicted RBP13.16□□□□□ -0.3
NUP88-213ENST00000576862 SPDYE16A6NNV3 312 aaPredicted RBP13.15□□□□□ -0.3
NUP88-213ENST00000576862 SEMA3EO15041 775 aa13.12□□□□□ -0.31
NUP88-213ENST00000576862 MARVELD3Q96A59 401 aa13.1□□□□□ -0.31
NUP88-213ENST00000576862 PTGER2P43116 358 aa13.09□□□□□ -0.31
NUP88-213ENST00000576862 LHX6Q9UPM6 363 aa13.09□□□□□ -0.31
NUP88-213ENST00000576862 MLLT3P42568 568 aaPredicted RBP13.07□□□□□ -0.32
NUP88-213ENST00000576862 TESPA1A2RU30 521 aaPredicted RBP13.06□□□□□ -0.32
NUP88-213ENST00000576862 ZNF316A6NFI3 1004 aaPredicted RBP13.06□□□□□ -0.32
NUP88-213ENST00000576862 NBR1Q14596 966 aa13.06□□□□□ -0.32
NUP88-213ENST00000576862 DDX12PQ92771 950 aa13.05□□□□□ -0.32
NUP88-213ENST00000576862 EMP3P54852 163 aa13.04□□□□□ -0.32
NUP88-213ENST00000576862 BCANQ96GW7 911 aa13.03□□□□□ -0.32
NUP88-213ENST00000576862 JPH4Q96JJ6 628 aa13.02□□□□□ -0.33
NUP88-213ENST00000576862 FOSBP53539 338 aa13.01□□□□□ -0.33
NUP88-213ENST00000576862 PCDHGA10Q9Y5H3 936 aa13.01□□□□□ -0.33
NUP88-213ENST00000576862 POTEB3A0JP26 581 aa13□□□□□ -0.33
NUP88-213ENST00000576862 GRXCR2A6NFK2 248 aa13□□□□□ -0.33
NUP88-213ENST00000576862 POTEBQ6S5H4 581 aa13□□□□□ -0.33
NUP88-213ENST00000576862 ERBB3P21860 1342 aa12.99□□□□□ -0.33
NUP88-213ENST00000576862 PHF14O94880 888 aa12.99□□□□□ -0.33
NUP88-213ENST00000576862 ZNF454Q8N9F8 522 aa12.99□□□□□ -0.33
NUP88-213ENST00000576862 FAM205CA6NFA0 338 aa12.98□□□□□ -0.33
NUP88-213ENST00000576862 OSBPP22059 807 aa12.97□□□□□ -0.33
NUP88-213ENST00000576862 PRIM1P49642 420 aaKnown RBP12.97□□□□□ -0.33
NUP88-213ENST00000576862 VARS2Q5ST30 1063 aaKnown RBP12.97□□□□□ -0.33
NUP88-213ENST00000576862 PSDA5PKW4 1024 aaPredicted RBP12.96□□□□□ -0.33
NUP88-213ENST00000576862 HS3ST6Q96QI5 342 aa12.95□□□□□ -0.34
NUP88-213ENST00000576862 EPAS1Q99814 870 aa12.94□□□□□ -0.34
NUP88-213ENST00000576862 TYW1BQ6NUM6 668 aa12.93□□□□□ -0.34
NUP88-213ENST00000576862 ZDHHC16Q969W1 377 aa12.93□□□□□ -0.34
NUP88-213ENST00000576862 PPP4R3BQ5MIZ7 849 aa12.92□□□□□ -0.34
NUP88-213ENST00000576862 SMYD5Q6GMV2 418 aa12.91□□□□□ -0.34
NUP88-213ENST00000576862 ADAM33Q9BZ11 813 aa12.91□□□□□ -0.34
NUP88-213ENST00000576862 EN1Q05925 392 aaPredicted RBP12.9□□□□□ -0.34
NUP88-213ENST00000576862 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.9□□□□□ -0.34
NUP88-213ENST00000576862 FBXW7Q969H0 707 aa12.9□□□□□ -0.34
NUP88-213ENST00000576862 RBM26Q5T8P6 1007 aaKnown RBP12.89□□□□□ -0.35
NUP88-213ENST00000576862 POTEGQ6S5H5 508 aa12.89□□□□□ -0.35
NUP88-213ENST00000576862 RBM33Q96EV2 1170 aaKnown RBP12.88□□□□□ -0.35
NUP88-213ENST00000576862 POTEMA6NI47 508 aa12.87□□□□□ -0.35
NUP88-213ENST00000576862 POTEEQ6S8J3 1075 aa12.87□□□□□ -0.35
NUP88-213ENST00000576862 ZNF687Q8N1G0 1237 aa12.87□□□□□ -0.35
NUP88-213ENST00000576862 BCL2L12Q9HB09 334 aa12.87□□□□□ -0.35
NUP88-213ENST00000576862 TSR1Q2NL82 804 aaKnown RBP12.85□□□□□ -0.35
NUP88-213ENST00000576862 MAP3K7O43318 606 aa12.84□□□□□ -0.35
NUP88-213ENST00000576862 TULP1O00294 542 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms