RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 PLCB2Q00722 1185 aa8.16□□□□□ -1.1
VPS39-212ENST00000570023 CRISPLD2Q9H0B8 497 aa8.14□□□□□ -1.11
VPS39-212ENST00000570023 C2orf72A6NCS6 295 aa8.13□□□□□ -1.11
VPS39-212ENST00000570023 CADPS2Q86UW7 1296 aa8.13□□□□□ -1.11
VPS39-212ENST00000570023 TMC2Q8TDI7 906 aa8.13□□□□□ -1.11
VPS39-212ENST00000570023 GPHNQ9NQX3 736 aaPredicted RBP8.13□□□□□ -1.11
VPS39-212ENST00000570023 NCKAP5LQ9HCH0 1330 aa8.11□□□□□ -1.11
VPS39-212ENST00000570023 SNPHO15079 494 aa8.1□□□□□ -1.11
VPS39-212ENST00000570023 PDE4AP27815 886 aa8.1□□□□□ -1.11
VPS39-212ENST00000570023 FOXK1P85037 733 aa8.1□□□□□ -1.11
VPS39-212ENST00000570023 TSHZ2Q9NRE2 1034 aa8.08□□□□□ -1.12
VPS39-212ENST00000570023 HOXB3P14651 431 aaPredicted RBP8.07□□□□□ -1.12
VPS39-212ENST00000570023 DSG2Q14126 1118 aa8.07□□□□□ -1.12
VPS39-212ENST00000570023 MFSD10Q14728 455 aa8.07□□□□□ -1.12
VPS39-212ENST00000570023 DOK7Q18PE1 504 aa8.05□□□□□ -1.12
VPS39-212ENST00000570023 LARP6Q9BRS8 491 aaKnown RBP8.05□□□□□ -1.12
VPS39-212ENST00000570023 PLPP6Q8IY26 295 aa8.04□□□□□ -1.12
VPS39-212ENST00000570023 SLC34A2O95436 690 aa8.03□□□□□ -1.12
VPS39-212ENST00000570023 PPP1R15BQ5SWA1 713 aa8.03□□□□□ -1.12
VPS39-212ENST00000570023 DDX27Q96GQ7 796 aaKnown RBP8.03□□□□□ -1.12
VPS39-212ENST00000570023 LCE2DQ5TA82 110 aaPredicted RBP8.01□□□□□ -1.13
VPS39-212ENST00000570023 ZSWIM6Q9HCJ5 1215 aa8.01□□□□□ -1.13
VPS39-212ENST00000570023 RIMBP2O15034 1052 aa8□□□□□ -1.13
VPS39-212ENST00000570023 ST18O60284 1047 aa8□□□□□ -1.13
VPS39-212ENST00000570023 FAM163AQ96GL9 167 aaPredicted RBP8□□□□□ -1.13
VPS39-212ENST00000570023 PTCD2Q8WV60 388 aaKnown RBP7.99□□□□□ -1.13
VPS39-212ENST00000570023 HAP1P54257 671 aaPredicted RBP7.98□□□□□ -1.13
VPS39-212ENST00000570023 CAMK2BQ13554 666 aa7.98□□□□□ -1.13
VPS39-212ENST00000570023 HOXB1P14653 301 aaPredicted RBP7.97□□□□□ -1.13
VPS39-212ENST00000570023 GPR153Q6NV75 609 aa7.97□□□□□ -1.13
VPS39-212ENST00000570023 ZNF710Q8N1W2 664 aa7.97□□□□□ -1.13
VPS39-212ENST00000570023 OXER1Q8TDS5 423 aa7.96□□□□□ -1.14
VPS39-212ENST00000570023 WDR70Q9NW82 654 aa7.96□□□□□ -1.14
VPS39-212ENST00000570023 PCDHGA4Q9Y5G9 962 aa7.95□□□□□ -1.14
VPS39-212ENST00000570023 ARSIQ5FYB1 569 aa7.94□□□□□ -1.14
VPS39-212ENST00000570023 KDM4FA0A1W2PPD8 638 aa7.93□□□□□ -1.14
VPS39-212ENST00000570023 TBC1D12O60347 775 aa7.93□□□□□ -1.14
VPS39-212ENST00000570023 E2F4Q16254 413 aa7.93□□□□□ -1.14
VPS39-212ENST00000570023 VSIG10Q8N0Z9 540 aa7.93□□□□□ -1.14
VPS39-212ENST00000570023 EMILIN3Q9NT22 766 aa7.93□□□□□ -1.14
VPS39-212ENST00000570023 KDM2AQ9Y2K7 1162 aa7.92□□□□□ -1.14
VPS39-212ENST00000570023 ARIH1Q9Y4X5 557 aaPredicted RBP7.91□□□□□ -1.14
VPS39-212ENST00000570023 UPF1Q92900 1129 aaKnown RBP eCLIP7.89□□□□□ -1.15
VPS39-212ENST00000570023 KHSRPQ92945 711 aaKnown RBP eCLIP7.89□□□□□ -1.15
VPS39-212ENST00000570023 MARVELD3Q96A59 401 aa7.88□□□□□ -1.15
VPS39-212ENST00000570023 ANO8Q9HCE9 1232 aaPredicted RBP7.88□□□□□ -1.15
VPS39-212ENST00000570023 NUDT7P0C024 238 aa7.87□□□□□ -1.15
VPS39-212ENST00000570023 EMP3P54852 163 aa7.87□□□□□ -1.15
VPS39-212ENST00000570023 MAP3K9P80192 1104 aa7.87□□□□□ -1.15
VPS39-212ENST00000570023 POTEMA6NI47 508 aa7.86□□□□□ -1.15
VPS39-212ENST00000570023 POTEGQ6S5H5 508 aa7.86□□□□□ -1.15
VPS39-212ENST00000570023 ARHGEF1Q92888 912 aaKnown RBP7.85□□□□□ -1.15
VPS39-212ENST00000570023 ZNF316A6NFI3 1004 aaPredicted RBP7.84□□□□□ -1.15
VPS39-212ENST00000570023 DPYSL4O14531 572 aa7.84□□□□□ -1.15
VPS39-212ENST00000570023 EVI5O60447 810 aa7.84□□□□□ -1.15
VPS39-212ENST00000570023 KCNV2Q8TDN2 545 aa7.84□□□□□ -1.15
VPS39-212ENST00000570023 SPDYE16A6NNV3 312 aaPredicted RBP7.83□□□□□ -1.16
VPS39-212ENST00000570023 P3H3Q8IVL6 736 aa7.83□□□□□ -1.16
VPS39-212ENST00000570023 LHX6Q9UPM6 363 aa7.83□□□□□ -1.16
VPS39-212ENST00000570023 ERBB3P21860 1342 aa7.82□□□□□ -1.16
VPS39-212ENST00000570023 POTEB3A0JP26 581 aa7.82□□□□□ -1.16
VPS39-212ENST00000570023 FAM205CA6NFA0 338 aa7.82□□□□□ -1.16
VPS39-212ENST00000570023 POTEBQ6S5H4 581 aa7.82□□□□□ -1.16
VPS39-212ENST00000570023 PSDA5PKW4 1024 aaPredicted RBP7.81□□□□□ -1.16
VPS39-212ENST00000570023 PDIA6Q15084 440 aa7.81□□□□□ -1.16
VPS39-212ENST00000570023 HS3ST6Q96QI5 342 aa7.81□□□□□ -1.16
VPS39-212ENST00000570023 PTGER2P43116 358 aa7.8□□□□□ -1.16
VPS39-212ENST00000570023 VARS2Q5ST30 1063 aaKnown RBP7.8□□□□□ -1.16
VPS39-212ENST00000570023 SLC24A1O60721 1099 aa7.78□□□□□ -1.16
VPS39-212ENST00000570023 PCDH10Q9P2E7 1040 aa7.78□□□□□ -1.16
VPS39-212ENST00000570023 FOSBP53539 338 aa7.77□□□□□ -1.17
VPS39-212ENST00000570023 ZNF687Q8N1G0 1237 aa7.77□□□□□ -1.17
VPS39-212ENST00000570023 JPH4Q96JJ6 628 aa7.77□□□□□ -1.17
VPS39-212ENST00000570023 PHF14O94880 888 aa7.74□□□□□ -1.17
VPS39-212ENST00000570023 MYT1Q01538 1121 aa7.74□□□□□ -1.17
VPS39-212ENST00000570023 PPP4R3BQ5MIZ7 849 aa7.74□□□□□ -1.17
VPS39-212ENST00000570023 CDAN1Q8IWY9 1227 aa7.74□□□□□ -1.17
VPS39-212ENST00000570023 PCDHGA10Q9Y5H3 936 aa7.74□□□□□ -1.17
VPS39-212ENST00000570023 ZNF454Q8N9F8 522 aa7.73□□□□□ -1.17
VPS39-212ENST00000570023 EPAS1Q99814 870 aa7.73□□□□□ -1.17
VPS39-212ENST00000570023 PBX2P40425 430 aa7.72□□□□□ -1.17
VPS39-212ENST00000570023 DDX12PQ92771 950 aa7.72□□□□□ -1.17
VPS39-212ENST00000570023 ZDHHC16Q969W1 377 aa7.72□□□□□ -1.17
VPS39-212ENST00000570023 TYW1BQ6NUM6 668 aa7.71□□□□□ -1.18
VPS39-212ENST00000570023 FBXW7Q969H0 707 aa7.71□□□□□ -1.18
VPS39-212ENST00000570023 BCL2L12Q9HB09 334 aa7.71□□□□□ -1.18
VPS39-212ENST00000570023 POTEEQ6S8J3 1075 aa7.7□□□□□ -1.18
VPS39-212ENST00000570023 KRTAP3-3Q9BYR6 98 aa7.7□□□□□ -1.18
VPS39-212ENST00000570023 KRTAP3-2Q9BYR7 98 aa7.7□□□□□ -1.18
VPS39-212ENST00000570023 ADAM33Q9BZ11 813 aa7.69□□□□□ -1.18
VPS39-212ENST00000570023 TESPA1A2RU30 521 aaPredicted RBP7.68□□□□□ -1.18
VPS39-212ENST00000570023 ARHGAP33O14559 1287 aa7.68□□□□□ -1.18
VPS39-212ENST00000570023 SEMA3EO15041 775 aa7.68□□□□□ -1.18
VPS39-212ENST00000570023 OSBPP22059 807 aa7.68□□□□□ -1.18
VPS39-212ENST00000570023 GRXCR2A6NFK2 248 aa7.67□□□□□ -1.18
VPS39-212ENST00000570023 MLLT3P42568 568 aaPredicted RBP7.67□□□□□ -1.18
VPS39-212ENST00000570023 NBR1Q14596 966 aa7.67□□□□□ -1.18
VPS39-212ENST00000570023 EN1Q05925 392 aaPredicted RBP7.66□□□□□ -1.18
VPS39-212ENST00000570023 PTPREP23469 700 aa7.65□□□□□ -1.18
VPS39-212ENST00000570023 PRIM1P49642 420 aaKnown RBP7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms