RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 ATAD2BQ9ULI0 1458 aa10.94□□□□□ -0.66
VPS39-209ENST00000568029 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.94□□□□□ -0.66
VPS39-209ENST00000568029 ATN1P54259 1190 aaPredicted RBP10.93□□□□□ -0.66
VPS39-209ENST00000568029 P3H3Q8IVL6 736 aa10.93□□□□□ -0.66
VPS39-209ENST00000568029 DCBLD2Q96PD2 775 aa10.93□□□□□ -0.66
VPS39-209ENST00000568029 WDR70Q9NW82 654 aa10.92□□□□□ -0.66
VPS39-209ENST00000568029 HMGXB3Q12766 1538 aa10.9□□□□□ -0.66
VPS39-209ENST00000568029 BAZ1AQ9NRL2 1556 aaPredicted RBP10.9□□□□□ -0.67
VPS39-209ENST00000568029 IRX5P78411 483 aaPredicted RBP10.88□□□□□ -0.67
VPS39-209ENST00000568029 NBR1Q14596 966 aa10.88□□□□□ -0.67
VPS39-209ENST00000568029 SMARCA4P51532 1647 aa10.87□□□□□ -0.67
VPS39-209ENST00000568029 PDE4AP27815 886 aa10.86□□□□□ -0.67
VPS39-209ENST00000568029 PDCD7Q8N8D1 485 aaKnown RBP10.86□□□□□ -0.67
VPS39-209ENST00000568029 CRISPLD2Q9H0B8 497 aa10.86□□□□□ -0.67
VPS39-209ENST00000568029 OCEL1Q9H607 264 aa10.86□□□□□ -0.67
VPS39-209ENST00000568029 MFSD10Q14728 455 aa10.85□□□□□ -0.67
VPS39-209ENST00000568029 NCKAP5LQ9HCH0 1330 aa10.84□□□□□ -0.67
VPS39-209ENST00000568029 LAMC3Q9Y6N6 1575 aa10.84□□□□□ -0.67
VPS39-209ENST00000568029 KCNV2Q8TDN2 545 aa10.81□□□□□ -0.68
VPS39-209ENST00000568029 SLC39A7Q92504 469 aa10.8□□□□□ -0.68
VPS39-209ENST00000568029 TMEM121BQ9BXQ6 578 aaPredicted RBP10.8□□□□□ -0.68
VPS39-209ENST00000568029 BAZ1BQ9UIG0 1483 aaKnown RBP10.8□□□□□ -0.68
VPS39-209ENST00000568029 PLCG2P16885 1265 aa10.79□□□□□ -0.68
VPS39-209ENST00000568029 E2F4Q16254 413 aa10.79□□□□□ -0.68
VPS39-209ENST00000568029 DPY19L2Q6NUT2 758 aa10.79□□□□□ -0.68
VPS39-209ENST00000568029 MICALL2Q8IY33 904 aa10.79□□□□□ -0.68
VPS39-209ENST00000568029 RIMBP3CA6NJZ7 1639 aa10.79□□□□□ -0.68
VPS39-209ENST00000568029 RIMBP3BA6NNM3 1639 aa10.79□□□□□ -0.68
VPS39-209ENST00000568029 RIMBP3Q9UFD9 1639 aa10.79□□□□□ -0.68
VPS39-209ENST00000568029 WDR62O43379 1518 aa10.79□□□□□ -0.68
VPS39-209ENST00000568029 ARHGEF1Q92888 912 aaKnown RBP10.78□□□□□ -0.68
VPS39-209ENST00000568029 LARP6Q9BRS8 491 aaKnown RBP10.78□□□□□ -0.68
VPS39-209ENST00000568029 C7P10643 843 aa10.77□□□□□ -0.69
VPS39-209ENST00000568029 DDX27Q96GQ7 796 aaKnown RBP10.77□□□□□ -0.69
VPS39-209ENST00000568029 GPHNQ9NQX3 736 aaPredicted RBP10.77□□□□□ -0.69
VPS39-209ENST00000568029 BOLA1Q9Y3E2 137 aa10.77□□□□□ -0.69
VPS39-209ENST00000568029 PELP1Q8IZL8 1130 aaKnown RBP10.76□□□□□ -0.69
VPS39-209ENST00000568029 L3MBTL3Q96JM7 780 aaPredicted RBP10.76□□□□□ -0.69
VPS39-209ENST00000568029 ARIH1Q9Y4X5 557 aaPredicted RBP10.76□□□□□ -0.69
VPS39-209ENST00000568029 MRC2Q9UBG0 1479 aa10.75□□□□□ -0.69
VPS39-209ENST00000568029 CAMK2BQ13554 666 aa10.74□□□□□ -0.69
VPS39-209ENST00000568029 G3V3G9 751 aa10.73□□□□□ -0.69
VPS39-209ENST00000568029 SEC24BO95487 1268 aa10.72□□□□□ -0.69
VPS39-209ENST00000568029 PDS5BQ9NTI5 1447 aa10.71□□□□□ -0.69
VPS39-209ENST00000568029 PEG3Q9GZU2 1588 aa10.7□□□□□ -0.7
VPS39-209ENST00000568029 COLQQ9Y215 455 aaPredicted RBP10.7□□□□□ -0.7
VPS39-209ENST00000568029 PPP1R15BQ5SWA1 713 aa10.69□□□□□ -0.7
VPS39-209ENST00000568029 TMC2Q8TDI7 906 aa10.69□□□□□ -0.7
VPS39-209ENST00000568029 FOXK1P85037 733 aa10.68□□□□□ -0.7
VPS39-209ENST00000568029 METRNQ9UJH8 293 aa10.68□□□□□ -0.7
VPS39-209ENST00000568029 POTEFA5A3E0 1075 aa10.67□□□□□ -0.7
VPS39-209ENST00000568029 KIF3CO14782 793 aa10.67□□□□□ -0.7
VPS39-209ENST00000568029 ARHGEF11O15085 1522 aa10.66□□□□□ -0.7
VPS39-209ENST00000568029 DSG2Q14126 1118 aa10.64□□□□□ -0.71
VPS39-209ENST00000568029 MROH2BQ7Z745 1585 aa10.64□□□□□ -0.71
VPS39-209ENST00000568029 C2orf72A6NCS6 295 aa10.62□□□□□ -0.71
VPS39-209ENST00000568029 TPRNQ4KMQ1 711 aa10.62□□□□□ -0.71
VPS39-209ENST00000568029 CADPSQ9ULU8 1353 aa10.61□□□□□ -0.71
VPS39-209ENST00000568029 CEP164Q9UPV0 1460 aa10.61□□□□□ -0.71
VPS39-209ENST00000568029 TULP1O00294 542 aaPredicted RBP10.6□□□□□ -0.71
VPS39-209ENST00000568029 OTUD5Q96G74 571 aa10.6□□□□□ -0.71
VPS39-209ENST00000568029 TESPA1A2RU30 521 aaPredicted RBP10.59□□□□□ -0.71
VPS39-209ENST00000568029 POTEB2H3BUK9 544 aa10.59□□□□□ -0.71
VPS39-209ENST00000568029 PLPP6Q8IY26 295 aa10.58□□□□□ -0.72
VPS39-209ENST00000568029 URB2Q14146 1524 aaKnown RBP10.58□□□□□ -0.72
VPS39-209ENST00000568029 PRKCSHP14314 528 aaPredicted RBP10.57□□□□□ -0.72
VPS39-209ENST00000568029 FANCD2Q9BXW9 1451 aa10.56□□□□□ -0.72
VPS39-209ENST00000568029 SPDYE16A6NNV3 312 aaPredicted RBP10.56□□□□□ -0.72
VPS39-209ENST00000568029 TMEM92Q6UXU6 159 aa10.56□□□□□ -0.72
VPS39-209ENST00000568029 C3orf67Q6ZVT6 689 aa10.56□□□□□ -0.72
VPS39-209ENST00000568029 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.56□□□□□ -0.72
VPS39-209ENST00000568029 EMILIN3Q9NT22 766 aa10.56□□□□□ -0.72
VPS39-209ENST00000568029 ARAP1Q96P48 1450 aa10.55□□□□□ -0.72
VPS39-209ENST00000568029 SMYD5Q6GMV2 418 aa10.55□□□□□ -0.72
VPS39-209ENST00000568029 SEMA3EO15041 775 aa10.54□□□□□ -0.72
VPS39-209ENST00000568029 ZNF608Q9ULD9 1512 aaPredicted RBP10.53□□□□□ -0.72
VPS39-209ENST00000568029 PDIA6Q15084 440 aa10.53□□□□□ -0.72
VPS39-209ENST00000568029 LMOD2Q6P5Q4 547 aa10.53□□□□□ -0.72
VPS39-209ENST00000568029 WIZO95785 1651 aa10.53□□□□□ -0.72
VPS39-209ENST00000568029 CHD1O14646 1710 aa10.51□□□□□ -0.73
VPS39-209ENST00000568029 CYB5RLQ6IPT4 315 aa10.51□□□□□ -0.73
VPS39-209ENST00000568029 DPYSL4O14531 572 aa10.5□□□□□ -0.73
VPS39-209ENST00000568029 OXER1Q8TDS5 423 aa10.49□□□□□ -0.73
VPS39-209ENST00000568029 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.49□□□□□ -0.73
VPS39-209ENST00000568029 SLC34A2O95436 690 aa10.48□□□□□ -0.73
VPS39-209ENST00000568029 EIF4G3O43432 1585 aaKnown RBP10.48□□□□□ -0.73
VPS39-209ENST00000568029 MAMSTRQ6ZN01 415 aa10.46□□□□□ -0.73
VPS39-209ENST00000568029 PTCD2Q8WV60 388 aaKnown RBP10.45□□□□□ -0.74
VPS39-209ENST00000568029 MAP3K9P80192 1104 aa10.44□□□□□ -0.74
VPS39-209ENST00000568029 CFTRP13569 1480 aa10.43□□□□□ -0.74
VPS39-209ENST00000568029 PLSCR2Q9NRY7 297 aa10.43□□□□□ -0.74
VPS39-209ENST00000568029 TBC1D12O60347 775 aa10.41□□□□□ -0.74
VPS39-209ENST00000568029 PTGER2P43116 358 aa10.41□□□□□ -0.74
VPS39-209ENST00000568029 POTEJP0CG39 1038 aa10.4□□□□□ -0.74
VPS39-209ENST00000568029 MLLT3P42568 568 aaPredicted RBP10.4□□□□□ -0.74
VPS39-209ENST00000568029 POTEMA6NI47 508 aa10.39□□□□□ -0.75
VPS39-209ENST00000568029 ZC3H15Q8WU90 426 aaKnown RBP10.39□□□□□ -0.75
VPS39-209ENST00000568029 UPF1Q92900 1129 aaKnown RBP eCLIP10.39□□□□□ -0.75
VPS39-209ENST00000568029 PRDM2Q13029 1718 aa10.38□□□□□ -0.75
VPS39-209ENST00000568029 ZNF316A6NFI3 1004 aaPredicted RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms