RNA–Protein interactions for RNA: ENST00000566121.1

CMTM3-212, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 3 BASIC

Gene CMTM3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-212ENST00000566121 MYO5CQ9NQX4 1742 aa24.63■■□□□ 1.53
CMTM3-212ENST00000566121 PTPRMP28827 1452 aa24.62■■□□□ 1.53
CMTM3-212ENST00000566121 LRRIQ1Q96JM4 1722 aa24.61■■□□□ 1.53
CMTM3-212ENST00000566121 ZFYVE16Q7Z3T8 1539 aa24.6■■□□□ 1.53
CMTM3-212ENST00000566121 ARID4BQ4LE39 1312 aaPredicted RBP24.59■■□□□ 1.53
CMTM3-212ENST00000566121 PCF11O94913 1555 aaKnown RBP24.59■■□□□ 1.53
CMTM3-212ENST00000566121 ZNF518AQ6AHZ1 1483 aa24.58■■□□□ 1.52
CMTM3-212ENST00000566121 YEATS2Q9ULM3 1422 aa24.57■■□□□ 1.52
CMTM3-212ENST00000566121 HECW2Q9P2P5 1572 aa24.57■■□□□ 1.52
CMTM3-212ENST00000566121 ATP10AO60312 1499 aa24.56■■□□□ 1.52
CMTM3-212ENST00000566121 ARHGAP5Q13017 1502 aa24.54■■□□□ 1.52
CMTM3-212ENST00000566121 KDM5CP41229 1560 aa24.54■■□□□ 1.52
CMTM3-212ENST00000566121 MLH3Q9UHC1 1453 aa24.51■■□□□ 1.51
CMTM3-212ENST00000566121 C9orf84Q5VXU9 1444 aa24.5■■□□□ 1.51
CMTM3-212ENST00000566121 CDC42BPBQ9Y5S2 1711 aa24.49■■□□□ 1.51
CMTM3-212ENST00000566121 AFAP1Q8N556 730 aa24.49■■□□□ 1.51
CMTM3-212ENST00000566121 PREX2Q70Z35 1606 aa24.49■■□□□ 1.51
CMTM3-212ENST00000566121 MADDQ8WXG6 1647 aa24.49■■□□□ 1.51
CMTM3-212ENST00000566121 REREQ9P2R6 1566 aa24.46■■□□□ 1.51
CMTM3-212ENST00000566121 GPATCH8Q9UKJ3 1502 aaKnown RBP24.44■■□□□ 1.5
CMTM3-212ENST00000566121 ABCC1P33527 1531 aa24.43■■□□□ 1.5
CMTM3-212ENST00000566121 ARHGEF12Q9NZN5 1544 aa24.42■■□□□ 1.5
CMTM3-212ENST00000566121 KIAA1107Q9UPP5 1409 aa24.42■■□□□ 1.5
CMTM3-212ENST00000566121 SIGLEC1Q9BZZ2 1709 aa24.41■■□□□ 1.5
CMTM3-212ENST00000566121 TRAPPC8Q9Y2L5 1435 aa24.4■■□□□ 1.5
CMTM3-212ENST00000566121 CDC42BPAQ5VT25 1732 aa24.4■■□□□ 1.5
CMTM3-212ENST00000566121 CEP162Q5TB80 1403 aa24.39■■□□□ 1.5
CMTM3-212ENST00000566121 AGLP35573 1532 aa24.38■■□□□ 1.49
CMTM3-212ENST00000566121 PLEKHH2Q8IVE3 1493 aa24.38■■□□□ 1.49
CMTM3-212ENST00000566121 MTUS2Q5JR59 1369 aa24.36■■□□□ 1.49
CMTM3-212ENST00000566121 RIMS1Q86UR5 1692 aaKnown RBP24.36■■□□□ 1.49
CMTM3-212ENST00000566121 DIP2CQ9Y2E4 1556 aa24.35■■□□□ 1.49
CMTM3-212ENST00000566121 LMTK3Q96Q04 1460 aa24.35■■□□□ 1.49
CMTM3-212ENST00000566121 ITSN2Q9NZM3 1697 aa24.34■■□□□ 1.49
CMTM3-212ENST00000566121 CCNB3Q8WWL7 1395 aa24.33■■□□□ 1.49
CMTM3-212ENST00000566121 CFDP1Q9UEE9 299 aaPredicted RBP24.33■■□□□ 1.49
CMTM3-212ENST00000566121 MLECQ14165 292 aa24.3■■□□□ 1.48
CMTM3-212ENST00000566121 SAMD9LQ8IVG5 1584 aa24.29■■□□□ 1.48
CMTM3-212ENST00000566121 FER1L4A9Z1Z3 1794 aa24.29■■□□□ 1.48
CMTM3-212ENST00000566121 EHBP1L1Q8N3D4 1523 aa24.28■■□□□ 1.48
CMTM3-212ENST00000566121 KIDINS220Q9ULH0 1771 aa24.28■■□□□ 1.48
CMTM3-212ENST00000566121 ABCA6Q8N139 1617 aa24.28■■□□□ 1.48
CMTM3-212ENST00000566121 MYT1LQ9UL68 1186 aa24.27■■□□□ 1.48
CMTM3-212ENST00000566121 SETD1BQ9UPS6 1966 aaKnown RBP24.26■■□□□ 1.47
CMTM3-212ENST00000566121 SPAG9O60271 1321 aaKnown RBP24.26■■□□□ 1.47
CMTM3-212ENST00000566121 HNRNPMP52272 730 aaKnown RBP eCLIP24.25■■□□□ 1.47
CMTM3-212ENST00000566121 ZNF777Q9ULD5 760 aaPredicted RBP24.25■■□□□ 1.47
CMTM3-212ENST00000566121 RSPH4AQ5TD94 716 aa24.23■■□□□ 1.47
CMTM3-212ENST00000566121 SYCP2Q9BX26 1530 aa24.23■■□□□ 1.47
CMTM3-212ENST00000566121 CNTLNQ9NXG0 1405 aa24.22■■□□□ 1.47
CMTM3-212ENST00000566121 ILDR1Q86SU0 546 aaPredicted RBP24.22■■□□□ 1.47
CMTM3-212ENST00000566121 MBD5Q9P267 1494 aa24.2■■□□□ 1.47
CMTM3-212ENST00000566121 RTEL1-TNFRSF6BF6WH68 1400 aa24.2■■□□□ 1.46
CMTM3-212ENST00000566121 PPP6R1Q9UPN7 881 aa24.2■■□□□ 1.46
CMTM3-212ENST00000566121 TIAM1Q13009 1591 aa24.2■■□□□ 1.46
CMTM3-212ENST00000566121 VPS8Q8N3P4 1428 aa24.19■■□□□ 1.46
CMTM3-212ENST00000566121 MAP3K1Q13233 1512 aa24.18■■□□□ 1.46
CMTM3-212ENST00000566121 ATP7AQ04656 1500 aa24.16■■□□□ 1.46
CMTM3-212ENST00000566121 LOC105371045A0A1W2PR82 267 aa24.16■■□□□ 1.46
CMTM3-212ENST00000566121 INO80Q9ULG1 1556 aaPredicted RBP24.16■■□□□ 1.46
CMTM3-212ENST00000566121 ESF1Q9H501 851 aaKnown RBP24.15■■□□□ 1.46
CMTM3-212ENST00000566121 PLXNC1O60486 1568 aa24.14■■□□□ 1.45
CMTM3-212ENST00000566121 CEBPAP49715 358 aaPredicted RBP24.14■■□□□ 1.45
CMTM3-212ENST00000566121 NCOA2Q15596 1464 aa24.13■■□□□ 1.45
CMTM3-212ENST00000566121 A2MP01023 1474 aa24.13■■□□□ 1.45
CMTM3-212ENST00000566121 ZNF644Q9H582 1327 aaPredicted RBP24.12■■□□□ 1.45
CMTM3-212ENST00000566121 PREX1Q8TCU6 1659 aa24.12■■□□□ 1.45
CMTM3-212ENST00000566121 HSPA2P54652 639 aa24.12■■□□□ 1.45
CMTM3-212ENST00000566121 SUPT6HQ7KZ85 1726 aaKnown RBP24.1■■□□□ 1.45
CMTM3-212ENST00000566121 NPATQ14207 1427 aa24.1■■□□□ 1.45
CMTM3-212ENST00000566121 UHRF1BP1Q6BDS2 1440 aa24.1■■□□□ 1.45
CMTM3-212ENST00000566121 LRRC9Q6ZRR7 1453 aa24.09■■□□□ 1.45
CMTM3-212ENST00000566121 DMRT2Q9Y5R5 561 aa24.08■■□□□ 1.45
CMTM3-212ENST00000566121 DHX29Q7Z478 1369 aaKnown RBP24.07■■□□□ 1.44
CMTM3-212ENST00000566121 PLPPR3Q6T4P5 718 aa24.07■■□□□ 1.44
CMTM3-212ENST00000566121 FBXO41Q8TF61 875 aa24.07■■□□□ 1.44
CMTM3-212ENST00000566121 MROH2AA6NES4 1674 aa24.07■■□□□ 1.44
CMTM3-212ENST00000566121 ZMYM3Q14202 1370 aa24.06■■□□□ 1.44
CMTM3-212ENST00000566121 C3P01024 1663 aa24.06■■□□□ 1.44
CMTM3-212ENST00000566121 CCDC141Q6ZP82 1450 aa24.04■■□□□ 1.44
CMTM3-212ENST00000566121 ADGBQ8N7X0 1667 aa24.04■■□□□ 1.44
CMTM3-212ENST00000566121 ARHGEF5Q12774 1597 aa24.02■■□□□ 1.44
CMTM3-212ENST00000566121 CAMSAP2Q08AD1 1489 aa24.01■■□□□ 1.43
CMTM3-212ENST00000566121 MIA2Q96PC5 1412 aa24.01■■□□□ 1.43
CMTM3-212ENST00000566121 FAM135AQ9P2D6 1515 aa23.99■■□□□ 1.43
CMTM3-212ENST00000566121 TSPY4P0CV99 314 aa23.98■■□□□ 1.43
CMTM3-212ENST00000566121 TSPY10P0CW01 314 aa23.98■■□□□ 1.43
CMTM3-212ENST00000566121 PTPRTO14522 1441 aa23.96■■□□□ 1.43
CMTM3-212ENST00000566121 KANK4Q5T7N3 995 aaPredicted RBP23.96■■□□□ 1.43
CMTM3-212ENST00000566121 GGT6Q6P531 493 aa23.95■■□□□ 1.42
CMTM3-212ENST00000566121 PTPRKQ15262 1439 aa23.93■■□□□ 1.42
CMTM3-212ENST00000566121 STRCQ7RTU9 1775 aa23.93■■□□□ 1.42
CMTM3-212ENST00000566121 MYOM3Q5VTT5 1437 aa23.93■■□□□ 1.42
CMTM3-212ENST00000566121 MAST1Q9Y2H9 1570 aa23.9■■□□□ 1.42
CMTM3-212ENST00000566121 CERKQ8TCT0 537 aa23.89■■□□□ 1.41
CMTM3-212ENST00000566121 NCOA1Q15788 1441 aa23.88■■□□□ 1.41
CMTM3-212ENST00000566121 CLTCQ00610 1675 aaKnown RBP23.87■■□□□ 1.41
CMTM3-212ENST00000566121 KIF3BO15066 747 aa23.87■■□□□ 1.41
CMTM3-212ENST00000566121 APLP2Q06481 763 aa23.86■■□□□ 1.41
CMTM3-212ENST00000566121 PLA2R1Q13018 1463 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms