RNA–Protein interactions for RNA: ENST00000566029.5

CHD9-218, Transcript of chromodomain helicase DNA binding protein 9, human

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 13,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-218	ENST00000566029	PLCB2	Q00722	1185 aa		3.83	□□□□□ -1.8
CHD9-218	ENST00000566029	FGD1	P98174	961 aa		3.83	□□□□□ -1.8
CHD9-218	ENST00000566029	CLCN1	P35523	988 aa		3.82	□□□□□ -1.8
CHD9-218	ENST00000566029	TOP2A	P11388	1531 aa	Known RBP	3.82	□□□□□ -1.8
CHD9-218	ENST00000566029	EXOC6	Q8TAG9	804 aa		3.82	□□□□□ -1.8
CHD9-218	ENST00000566029	PNN	Q9H307	717 aa	Known RBP	3.82	□□□□□ -1.8
CHD9-218	ENST00000566029	PRDM2	Q13029	1718 aa		3.82	□□□□□ -1.8
CHD9-218	ENST00000566029	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	3.82	□□□□□ -1.8
CHD9-218	ENST00000566029	PRX	Q9BXM0	1461 aa		3.82	□□□□□ -1.8
CHD9-218	ENST00000566029	DNTTIP2	Q5QJE6	756 aa	Known RBP	3.82	□□□□□ -1.8
CHD9-218	ENST00000566029	FRAT2	O75474	233 aa	Predicted RBP	3.81	□□□□□ -1.8
CHD9-218	ENST00000566029	C14orf37	Q86TY3	774 aa		3.81	□□□□□ -1.8
CHD9-218	ENST00000566029	CCDC7	Q96M83	1385 aa		3.81	□□□□□ -1.8
CHD9-218	ENST00000566029	AKNA	Q7Z591	1439 aa		3.81	□□□□□ -1.8
CHD9-218	ENST00000566029	TNNT2	P45379	298 aa	Predicted RBP	3.81	□□□□□ -1.8
CHD9-218	ENST00000566029	RAPGEF2	Q9Y4G8	1499 aa		3.81	□□□□□ -1.8
CHD9-218	ENST00000566029	SP100	P23497	879 aa	Predicted RBP	3.81	□□□□□ -1.8
CHD9-218	ENST00000566029	PHLDB1	Q86UU1	1377 aa		3.81	□□□□□ -1.8
CHD9-218	ENST00000566029	TPM2	P07951	284 aa		3.81	□□□□□ -1.8
CHD9-218	ENST00000566029	TONSL	Q96HA7	1378 aa		3.8	□□□□□ -1.8
CHD9-218	ENST00000566029	L1TD1	Q5T7N2	865 aa	Known RBP	3.8	□□□□□ -1.8
CHD9-218	ENST00000566029	MRS2	Q9HD23	443 aa		3.8	□□□□□ -1.8
CHD9-218	ENST00000566029	FSD2	A1L4K1	749 aa		3.8	□□□□□ -1.8
CHD9-218	ENST00000566029	ERCC6	Q03468	1493 aa		3.8	□□□□□ -1.8
CHD9-218	ENST00000566029	POGK	Q9P215	609 aa		3.8	□□□□□ -1.8
CHD9-218	ENST00000566029	AQR	O60306	1485 aa	Known RBP eCLIP	3.8	□□□□□ -1.8	5e-7	■■□□□ 14.2
CHD9-218	ENST00000566029	HSP90AA2P	Q14568	343 aa	Predicted RBP	3.79	□□□□□ -1.8
CHD9-218	ENST00000566029	RIPK4	P57078	832 aa		3.79	□□□□□ -1.8
CHD9-218	ENST00000566029	DHX29	Q7Z478	1369 aa	Known RBP	3.79	□□□□□ -1.8
CHD9-218	ENST00000566029	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	3.79	□□□□□ -1.8	3e-10	■■■■■ 27.7
CHD9-218	ENST00000566029	NCOA1	Q15788	1441 aa		3.79	□□□□□ -1.8
CHD9-218	ENST00000566029	MYOM3	Q5VTT5	1437 aa		3.79	□□□□□ -1.8
CHD9-218	ENST00000566029	BCL11B	Q9C0K0	894 aa	Predicted RBP	3.79	□□□□□ -1.8
CHD9-218	ENST00000566029	RRP1	P56182	461 aa	Known RBP	3.79	□□□□□ -1.8
CHD9-218	ENST00000566029	PDCL3	Q9H2J4	239 aa		3.79	□□□□□ -1.8
CHD9-218	ENST00000566029	LRPPRC	P42704	1394 aa	Known RBP	3.79	□□□□□ -1.8
CHD9-218	ENST00000566029	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	3.79	□□□□□ -1.8
CHD9-218	ENST00000566029	MAP3K1	Q13233	1512 aa		3.78	□□□□□ -1.8
CHD9-218	ENST00000566029	APP	P05067	770 aa		3.78	□□□□□ -1.8
CHD9-218	ENST00000566029	SLC4A3	P48751	1232 aa		3.78	□□□□□ -1.8
CHD9-218	ENST00000566029	CLSTN1	O94985	981 aa		3.78	□□□□□ -1.8
CHD9-218	ENST00000566029	TERF1	P54274	439 aa		3.78	□□□□□ -1.8
CHD9-218	ENST00000566029	FAM9B	Q8IZU0	186 aa		3.78	□□□□□ -1.8
CHD9-218	ENST00000566029	ERICH3	Q5RHP9	1530 aa		3.78	□□□□□ -1.8
CHD9-218	ENST00000566029	CALR	P27797	417 aa	Known RBP	3.78	□□□□□ -1.8
CHD9-218	ENST00000566029	XRCC6	P12956	609 aa	Known RBP eCLIP	3.78	□□□□□ -1.8	3e-6	■■■□□ 16.1
CHD9-218	ENST00000566029	CHMP4A	Q9BY43	222 aa		3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	PTMA	P06454	111 aa	Known RBP	3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	CCDC9	Q9Y3X0	531 aa	Known RBP	3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	UACA	Q9BZF9	1416 aa		3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	PEG3	Q9GZU2	1588 aa		3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	SCRIB	Q14160	1630 aa		3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	EIF3D	O15371	548 aa	Known RBP eCLIP	3.77	□□□□□ -1.81	9e-7	■□□□□ 9.6
CHD9-218	ENST00000566029	WWC1	Q8IX03	1113 aa		3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	PLCD4	Q9BRC7	762 aa		3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	USP19	O94966	1318 aa		3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	KDM2B	Q8NHM5	1336 aa		3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	OFD1	O75665	1012 aa		3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	PDIA4	P13667	645 aa	Known RBP	3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	UTP14C	Q5TAP6	766 aa	Known RBP	3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	PRM3	Q9NNZ6	103 aa		3.77	□□□□□ -1.81
CHD9-218	ENST00000566029	ERBB4	Q15303	1308 aa		3.76	□□□□□ -1.81
CHD9-218	ENST00000566029	KIF21A	Q7Z4S6	1674 aa		3.76	□□□□□ -1.81
CHD9-218	ENST00000566029	INSR	P06213	1382 aa		3.76	□□□□□ -1.81
CHD9-218	ENST00000566029	DHX37	Q8IY37	1157 aa	Known RBP	3.76	□□□□□ -1.81
CHD9-218	ENST00000566029	SMAP1	Q8IYB5	467 aa	Predicted RBP	3.76	□□□□□ -1.81
CHD9-218	ENST00000566029	KIF7	Q2M1P5	1343 aa		3.76	□□□□□ -1.81
CHD9-218	ENST00000566029	ARHGAP35	Q9NRY4	1499 aa		3.76	□□□□□ -1.81
CHD9-218	ENST00000566029	PNISR	Q8TF01	805 aa	Known RBP	3.76	□□□□□ -1.81
CHD9-218	ENST00000566029	EIF4G2	P78344	907 aa	Known RBP eCLIP	3.75	□□□□□ -1.81
CHD9-218	ENST00000566029	PDE3B	Q13370	1112 aa		3.75	□□□□□ -1.81
CHD9-218	ENST00000566029	LRRC9	Q6ZRR7	1453 aa		3.75	□□□□□ -1.81
CHD9-218	ENST00000566029	C8orf34	Q49A92	452 aa		3.75	□□□□□ -1.81
CHD9-218	ENST00000566029	HFM1	A2PYH4	1435 aa		3.75	□□□□□ -1.81
CHD9-218	ENST00000566029	FAM161A	Q3B820	660 aa		3.75	□□□□□ -1.81
CHD9-218	ENST00000566029	SKAP1	Q86WV1	359 aa		3.75	□□□□□ -1.81
CHD9-218	ENST00000566029	STAC3	Q96MF2	364 aa		3.75	□□□□□ -1.81
CHD9-218	ENST00000566029	MAPK8IP2	Q13387	824 aa	Predicted RBP	3.75	□□□□□ -1.81
CHD9-218	ENST00000566029	PTPRK	Q15262	1439 aa		3.74	□□□□□ -1.81
CHD9-218	ENST00000566029	SPRYD3	Q8NCJ5	442 aa		3.74	□□□□□ -1.81
CHD9-218	ENST00000566029	NAP1L2	Q9ULW6	460 aa	Predicted RBP	3.74	□□□□□ -1.81
CHD9-218	ENST00000566029	GOLGA6L3	A6NEY3	463 aa		3.74	□□□□□ -1.81
CHD9-218	ENST00000566029	ESPN	B1AK53	854 aa		3.74	□□□□□ -1.81
CHD9-218	ENST00000566029	RGS3	P49796	1198 aa		3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	MAP7D2	Q96T17	732 aa		3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	TRIM44	Q96DX7	344 aa	Predicted RBP	3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	SPATA31E1	Q6ZUB1	1445 aa		3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	MRE11	P49959	708 aa		3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	IPO4	Q8TEX9	1081 aa	Known RBP	3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	RCAN3	Q9UKA8	241 aa		3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	CFAP44	Q96MT7	982 aa		3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	CRBN	Q96SW2	442 aa		3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	ANTXR1	Q9H6X2	564 aa		3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	FMN1	Q68DA7	1419 aa		3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	SYNJ1	O43426	1573 aa		3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	CCDC18	Q5T9S5	1454 aa		3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	BRD4	O60885	1362 aa	Predicted RBP	3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	ROCK2	O75116	1388 aa	Known RBP	3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	KLHL34	Q8N239	644 aa		3.73	□□□□□ -1.81
CHD9-218	ENST00000566029	NBPF8	Q3BBV2	869 aa		3.72	□□□□□ -1.81

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