RNA–Protein interactions for RNA: ENST00000566029.5

CHD9-218, Transcript of chromodomain helicase DNA binding protein 9, human

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 13,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-218	ENST00000566029	PELP1	Q8IZL8	1130 aa	Known RBP	5.04	□□□□□ -1.6
CHD9-218	ENST00000566029	MYT1	Q01538	1121 aa		5.01	□□□□□ -1.61
CHD9-218	ENST00000566029	NISCH	Q9Y2I1	1504 aa		5	□□□□□ -1.61
CHD9-218	ENST00000566029	HRC	P23327	699 aa		5	□□□□□ -1.61
CHD9-218	ENST00000566029	EHMT2	Q96KQ7	1210 aa		4.9	□□□□□ -1.62
CHD9-218	ENST00000566029	TTBK1	Q5TCY1	1321 aa	Predicted RBP	4.88	□□□□□ -1.63
CHD9-218	ENST00000566029	ERICH6	Q7L0X2	663 aa		4.85	□□□□□ -1.63
CHD9-218	ENST00000566029	PPARGC1B	Q86YN6	1023 aa	Known RBP	4.78	□□□□□ -1.64
CHD9-218	ENST00000566029	SCAF1	Q9H7N4	1312 aa	Known RBP	4.77	□□□□□ -1.65
CHD9-218	ENST00000566029	PCGF6	Q9BYE7	350 aa		4.67	□□□□□ -1.66
CHD9-218	ENST00000566029	CHIC1	Q5VXU3	224 aa		4.66	□□□□□ -1.66
CHD9-218	ENST00000566029	DCAF1	Q9Y4B6	1507 aa		4.65	□□□□□ -1.66
CHD9-218	ENST00000566029	MYO15B	Q96JP2	1530 aa		4.64	□□□□□ -1.67
CHD9-218	ENST00000566029	ACIN1	Q9UKV3	1341 aa	Known RBP	4.63	□□□□□ -1.67
CHD9-218	ENST00000566029	ZEB1	P37275	1124 aa	Predicted RBP	4.62	□□□□□ -1.67
CHD9-218	ENST00000566029	NEUROD1	Q13562	356 aa		4.57	□□□□□ -1.68
CHD9-218	ENST00000566029	TRIM26	Q12899	539 aa	Predicted RBP	4.55	□□□□□ -1.68
CHD9-218	ENST00000566029	FAM9A	Q8IZU1	332 aa	Predicted RBP	4.55	□□□□□ -1.68
CHD9-218	ENST00000566029	BCL11A	Q9H165	835 aa		4.54	□□□□□ -1.68
CHD9-218	ENST00000566029	SUPT5H	O00267	1087 aa	Known RBP	4.53	□□□□□ -1.68
CHD9-218	ENST00000566029	GTF3C3	Q9Y5Q9	886 aa		4.52	□□□□□ -1.69
CHD9-218	ENST00000566029	CENPB	P07199	599 aa	Predicted RBP	4.49	□□□□□ -1.69
CHD9-218	ENST00000566029	RANGAP1	P46060	587 aa	Predicted RBP	4.49	□□□□□ -1.69
CHD9-218	ENST00000566029	PRKCSH	P14314	528 aa	Predicted RBP	4.48	□□□□□ -1.69
CHD9-218	ENST00000566029	CCDC180	Q9P1Z9	1646 aa		4.48	□□□□□ -1.69
CHD9-218	ENST00000566029	YTHDC1	Q96MU7	727 aa	Known RBP	4.46	□□□□□ -1.7
CHD9-218	ENST00000566029	SHROOM4	Q9ULL8	1493 aa		4.46	□□□□□ -1.7
CHD9-218	ENST00000566029	ANP32E	Q9BTT0	268 aa		4.45	□□□□□ -1.7
CHD9-218	ENST00000566029	DCAF8L2	P0C7V8	631 aa		4.43	□□□□□ -1.7
CHD9-218	ENST00000566029	LOC105371045	A0A1W2PR82	267 aa		4.42	□□□□□ -1.7
CHD9-218	ENST00000566029	TRIM41	Q8WV44	630 aa		4.42	□□□□□ -1.7
CHD9-218	ENST00000566029	AMER1	Q5JTC6	1135 aa	Predicted RBP	4.4	□□□□□ -1.7
CHD9-218	ENST00000566029	CSRNP3	Q8WYN3	585 aa		4.4	□□□□□ -1.7
CHD9-218	ENST00000566029	DAXX	Q9UER7	740 aa	Predicted RBP	4.4	□□□□□ -1.7
CHD9-218	ENST00000566029	APLP2	Q06481	763 aa		4.4	□□□□□ -1.71
CHD9-218	ENST00000566029	TSHZ2	Q9NRE2	1034 aa		4.39	□□□□□ -1.71
CHD9-218	ENST00000566029	HMGB1	P09429	215 aa	Known RBP	4.39	□□□□□ -1.71
CHD9-218	ENST00000566029	DIEXF	Q68CQ4	756 aa	Known RBP	4.38	□□□□□ -1.71
CHD9-218	ENST00000566029	CLSPN	Q9HAW4	1339 aa		4.36	□□□□□ -1.71
CHD9-218	ENST00000566029	BAZ1B	Q9UIG0	1483 aa	Known RBP	4.32	□□□□□ -1.72
CHD9-218	ENST00000566029	SUPT16H	Q9Y5B9	1047 aa	Known RBP	4.32	□□□□□ -1.72
CHD9-218	ENST00000566029	SLC24A1	O60721	1099 aa		4.32	□□□□□ -1.72
CHD9-218	ENST00000566029	ZCCHC6	Q5VYS8	1495 aa	Known RBP	4.32	□□□□□ -1.72
CHD9-218	ENST00000566029	ZNF316	A6NFI3	1004 aa	Predicted RBP	4.31	□□□□□ -1.72
CHD9-218	ENST00000566029	MIER1	Q8N108	512 aa		4.29	□□□□□ -1.72
CHD9-218	ENST00000566029	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	4.29	□□□□□ -1.72
CHD9-218	ENST00000566029	SLC4A1AP	Q9BWU0	796 aa	Known RBP	4.28	□□□□□ -1.72
CHD9-218	ENST00000566029	CCER1	Q8TC90	406 aa	Predicted RBP	4.27	□□□□□ -1.73
CHD9-218	ENST00000566029	CNGB1	Q14028	1251 aa	Predicted RBP	4.27	□□□□□ -1.73
CHD9-218	ENST00000566029	HMGB1P1	B2RPK0	211 aa	Predicted RBP	4.25	□□□□□ -1.73
CHD9-218	ENST00000566029	MSH5	O43196	834 aa		4.23	□□□□□ -1.73
CHD9-218	ENST00000566029	WRN	Q14191	1432 aa	Predicted RBP eCLIP	4.23	□□□□□ -1.73	7e-6	■■■■■ 31.3
CHD9-218	ENST00000566029	EIF5B	O60841	1220 aa	Known RBP	4.22	□□□□□ -1.73
CHD9-218	ENST00000566029	MYT1L	Q9UL68	1186 aa		4.2	□□□□□ -1.74
CHD9-218	ENST00000566029	ANO8	Q9HCE9	1232 aa	Predicted RBP	4.2	□□□□□ -1.74
CHD9-218	ENST00000566029	FANCI	Q9NVI1	1328 aa		4.2	□□□□□ -1.74
CHD9-218	ENST00000566029	RBM19	Q9Y4C8	960 aa	Known RBP	4.19	□□□□□ -1.74
CHD9-218	ENST00000566029	POLR3GL	Q9BT43	218 aa		4.19	□□□□□ -1.74
CHD9-218	ENST00000566029	ERICH6B	Q5W0A0	696 aa		4.18	□□□□□ -1.74
CHD9-218	ENST00000566029	RTL5	Q5HYW3	569 aa	Predicted RBP	4.17	□□□□□ -1.74
CHD9-218	ENST00000566029	GLIPR1L2	Q4G1C9	344 aa		4.17	□□□□□ -1.74
CHD9-218	ENST00000566029	UBE2Q2	Q8WVN8	375 aa		4.17	□□□□□ -1.74
CHD9-218	ENST00000566029	NCBP3	Q53F19	620 aa	Known RBP	4.16	□□□□□ -1.74
CHD9-218	ENST00000566029	DEK	P35659	375 aa	Known RBP	4.15	□□□□□ -1.74
CHD9-218	ENST00000566029	SALL2	Q9Y467	1007 aa	Predicted RBP	4.14	□□□□□ -1.75
CHD9-218	ENST00000566029	RSF1	Q96T23	1441 aa	Predicted RBP	4.13	□□□□□ -1.75
CHD9-218	ENST00000566029	TULP1	O00294	542 aa	Predicted RBP	4.13	□□□□□ -1.75
CHD9-218	ENST00000566029	FKBP8	Q14318	412 aa		4.12	□□□□□ -1.75
CHD9-218	ENST00000566029	BCAN	Q96GW7	911 aa		4.12	□□□□□ -1.75
CHD9-218	ENST00000566029	NBR1	Q14596	966 aa		4.12	□□□□□ -1.75
CHD9-218	ENST00000566029	NPM2	Q86SE8	214 aa	Known RBP	4.11	□□□□□ -1.75
CHD9-218	ENST00000566029	PLPPR3	Q6T4P5	718 aa		4.11	□□□□□ -1.75
CHD9-218	ENST00000566029	TNIK	Q9UKE5	1360 aa		4.1	□□□□□ -1.75
CHD9-218	ENST00000566029	ARX	Q96QS3	562 aa		4.1	□□□□□ -1.75
CHD9-218	ENST00000566029	TPRN	Q4KMQ1	711 aa		4.1	□□□□□ -1.75
CHD9-218	ENST00000566029	CEP162	Q5TB80	1403 aa		4.1	□□□□□ -1.75
CHD9-218	ENST00000566029	DHX57	Q6P158	1386 aa	Known RBP	4.09	□□□□□ -1.75
CHD9-218	ENST00000566029	C11orf95	C9JLR9	678 aa	Predicted RBP	4.09	□□□□□ -1.75
CHD9-218	ENST00000566029	ZBTB7C	A1YPR0	619 aa		4.09	□□□□□ -1.75
CHD9-218	ENST00000566029	WASHC2A	Q641Q2	1341 aa		4.08	□□□□□ -1.76
CHD9-218	ENST00000566029	NEFL	P07196	543 aa		4.08	□□□□□ -1.76
CHD9-218	ENST00000566029	ARID4B	Q4LE39	1312 aa	Predicted RBP	4.07	□□□□□ -1.76
CHD9-218	ENST00000566029	HNRNPUL2	Q1KMD3	747 aa	Known RBP	4.07	□□□□□ -1.76
CHD9-218	ENST00000566029	CCDC136	Q96JN2	1154 aa		4.07	□□□□□ -1.76
CHD9-218	ENST00000566029	PDE4C	Q08493	712 aa		4.06	□□□□□ -1.76
CHD9-218	ENST00000566029	WASHC2C	Q9Y4E1	1318 aa		4.06	□□□□□ -1.76
CHD9-218	ENST00000566029	CCER2	I3L3R5	266 aa		4.06	□□□□□ -1.76
CHD9-218	ENST00000566029	ABCC9	O60706	1549 aa		4.06	□□□□□ -1.76
CHD9-218	ENST00000566029	ARID3A	Q99856	593 aa		4.06	□□□□□ -1.76
CHD9-218	ENST00000566029	IL27	Q8NEV9	243 aa		4.05	□□□□□ -1.76
CHD9-218	ENST00000566029	PAK3	O75914	559 aa	Predicted RBP	4.05	□□□□□ -1.76
CHD9-218	ENST00000566029	KCNH8	Q96L42	1107 aa		4.05	□□□□□ -1.76
CHD9-218	ENST00000566029	HMGB2	P26583	209 aa	Known RBP	4.05	□□□□□ -1.76
CHD9-218	ENST00000566029	ATP1B4	Q9UN42	357 aa	Predicted RBP	4.04	□□□□□ -1.76
CHD9-218	ENST00000566029	RTN4	Q9NQC3	1192 aa	Known RBP	4.04	□□□□□ -1.76
CHD9-218	ENST00000566029	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	4.04	□□□□□ -1.76
CHD9-218	ENST00000566029	NOP58	Q9Y2X3	529 aa	Known RBP	4.04	□□□□□ -1.76
CHD9-218	ENST00000566029	PODXL2	Q9NZ53	605 aa		4.04	□□□□□ -1.76
CHD9-218	ENST00000566029	CDK11A	Q9UQ88	783 aa	Predicted RBP	4.04	□□□□□ -1.76
CHD9-218	ENST00000566029	CUX2	O14529	1486 aa		4.03	□□□□□ -1.76

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