RNA–Protein interactions for RNA: ENST00000565298.5

IFT140-206, Transcript of intraflagellar transport 140, humanhuman

TSL 2

Gene IFT140, Length 4,727 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140-206ENST00000565298 ANP32BQ92688 251 aaKnown RBP24.92■■□□□ 1.58
IFT140-206ENST00000565298 FOXD1Q16676 465 aa24.91■■□□□ 1.58
IFT140-206ENST00000565298 CHMP4BQ9H444 224 aaKnown RBP24.9■■□□□ 1.58
IFT140-206ENST00000565298 RAB3GAP2Q9H2M9 1393 aa24.9■■□□□ 1.58
IFT140-206ENST00000565298 SOX12O15370 315 aa24.88■■□□□ 1.57
IFT140-206ENST00000565298 MS4A1P11836 297 aa24.86■■□□□ 1.57
IFT140-206ENST00000565298 IRX6P78412 446 aaPredicted RBP24.86■■□□□ 1.57
IFT140-206ENST00000565298 IGF1RP08069 1367 aa24.85■■□□□ 1.57
IFT140-206ENST00000565298 NPHP1O15259 732 aa24.83■■□□□ 1.57
IFT140-206ENST00000565298 ROCK2O75116 1388 aaKnown RBP24.83■■□□□ 1.57
IFT140-206ENST00000565298 EIF3AQ14152 1382 aaKnown RBP24.82■■□□□ 1.56
IFT140-206ENST00000565298 HSPA5P11021 654 aaKnown RBP24.82■■□□□ 1.56
IFT140-206ENST00000565298 EIF5BO60841 1220 aaKnown RBP24.8■■□□□ 1.56
IFT140-206ENST00000565298 RAD54L2Q9Y4B4 1467 aa24.79■■□□□ 1.56
IFT140-206ENST00000565298 PAK3O75914 559 aaPredicted RBP24.78■■□□□ 1.56
IFT140-206ENST00000565298 SENP3-EIF4A1A0A087X0R7 540 aa24.78■■□□□ 1.56
IFT140-206ENST00000565298 RTF1Q92541 710 aaKnown RBP24.75■■□□□ 1.55
IFT140-206ENST00000565298 TERF2IPQ9NYB0 399 aa24.75■■□□□ 1.55
IFT140-206ENST00000565298 RUSC2Q8N2Y8 1516 aa24.73■■□□□ 1.55
IFT140-206ENST00000565298 KTN1Q86UP2 1357 aaKnown RBP24.73■■□□□ 1.55
IFT140-206ENST00000565298 FRAT1Q92837 279 aaPredicted RBP24.73■■□□□ 1.55
IFT140-206ENST00000565298 CASC1Q6TDU7 716 aa24.71■■□□□ 1.55
IFT140-206ENST00000565298 AQRO60306 1485 aaKnown RBP eCLIP24.71■■□□□ 1.55
IFT140-206ENST00000565298 CSB-PGBD3P0DP91 1061 aa24.7■■□□□ 1.55
IFT140-206ENST00000565298 FAM69CQ0P6D2 419 aa24.7■■□□□ 1.54
IFT140-206ENST00000565298 L3MBTL2Q969R5 705 aa24.69■■□□□ 1.54
IFT140-206ENST00000565298 GRIN2BQ13224 1484 aa24.68■■□□□ 1.54
IFT140-206ENST00000565298 NGDNQ8NEJ9 315 aaKnown RBP24.67■■□□□ 1.54
IFT140-206ENST00000565298 VGFO15240 615 aaPredicted RBP24.66■■□□□ 1.54
IFT140-206ENST00000565298 BECN1Q14457 450 aa24.66■■□□□ 1.54
IFT140-206ENST00000565298 CHMP4AQ9BY43 222 aa24.66■■□□□ 1.54
IFT140-206ENST00000565298 UACAQ9BZF9 1416 aa24.65■■□□□ 1.54
IFT140-206ENST00000565298 CCDC144AA2RUR9 1427 aa24.65■■□□□ 1.54
IFT140-206ENST00000565298 CALD1Q05682 793 aaKnown RBP24.65■■□□□ 1.54
IFT140-206ENST00000565298 SUPT16HQ9Y5B9 1047 aaKnown RBP24.65■■□□□ 1.54
IFT140-206ENST00000565298 CCER2I3L3R5 266 aa24.64■■□□□ 1.54
IFT140-206ENST00000565298 CFTRP13569 1480 aa24.64■■□□□ 1.53
IFT140-206ENST00000565298 OS9Q13438 667 aaPredicted RBP24.64■■□□□ 1.53
IFT140-206ENST00000565298 RALBP1Q15311 655 aa24.63■■□□□ 1.53
IFT140-206ENST00000565298 U2AF1L5P0DN76 240 aaPredicted RBP24.62■■□□□ 1.53
IFT140-206ENST00000565298 U2AF1Q01081 240 aaKnown RBP eCLIP24.62■■□□□ 1.53
IFT140-206ENST00000565298 NUTM2DQ5VT03 806 aaPredicted RBP24.61■■□□□ 1.53
IFT140-206ENST00000565298 MRC2Q9UBG0 1479 aa24.58■■□□□ 1.53
IFT140-206ENST00000565298 MYOM3Q5VTT5 1437 aa24.58■■□□□ 1.52
IFT140-206ENST00000565298 DDRGK1Q96HY6 314 aa24.56■■□□□ 1.52
IFT140-206ENST00000565298 TRAK1Q9UPV9 953 aa24.55■■□□□ 1.52
IFT140-206ENST00000565298 GOLGA2Q08379 1002 aa24.54■■□□□ 1.52
IFT140-206ENST00000565298 IFT140Q96RY7 1462 aa24.52■■□□□ 1.52
IFT140-206ENST00000565298 NCLP19338 710 aaKnown RBP24.52■■□□□ 1.52
IFT140-206ENST00000565298 IPO8O15397 1037 aaKnown RBP24.52■■□□□ 1.52
IFT140-206ENST00000565298 CCDC9Q9Y3X0 531 aaKnown RBP24.51■■□□□ 1.51
IFT140-206ENST00000565298 CC2D2AQ9P2K1 1620 aa24.5■■□□□ 1.51
IFT140-206ENST00000565298 HMGXB3Q12766 1538 aa24.5■■□□□ 1.51
IFT140-206ENST00000565298 PPP4R2Q9NY27 417 aa24.5■■□□□ 1.51
IFT140-206ENST00000565298 GOLGA6L22H0YM25 854 aa24.48■■□□□ 1.51
IFT140-206ENST00000565298 AMPHP49418 695 aa24.48■■□□□ 1.51
IFT140-206ENST00000565298 NESP48681 1621 aa24.47■■□□□ 1.51
IFT140-206ENST00000565298 NUTM2FA1L443 756 aa24.45■■□□□ 1.5
IFT140-206ENST00000565298 RGS3P49796 1198 aa24.44■■□□□ 1.5
IFT140-206ENST00000565298 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.44■■□□□ 1.5
IFT140-206ENST00000565298 STAC3Q96MF2 364 aa24.44■■□□□ 1.5
IFT140-206ENST00000565298 PRG4Q92954 1404 aaPredicted RBP24.43■■□□□ 1.5
IFT140-206ENST00000565298 NLRP13Q86W25 1043 aa24.43■■□□□ 1.5
IFT140-206ENST00000565298 KIF15Q9NS87 1388 aa24.42■■□□□ 1.5
IFT140-206ENST00000565298 EVC2Q86UK5 1308 aa24.42■■□□□ 1.5
IFT140-206ENST00000565298 KCNJ4P48050 445 aa24.41■■□□□ 1.5
IFT140-206ENST00000565298 SYNJ2O15056 1496 aa24.41■■□□□ 1.5
IFT140-206ENST00000565298 LMOD3Q0VAK6 560 aa24.4■■□□□ 1.5
IFT140-206ENST00000565298 STK31Q9BXU1 1019 aa24.4■■□□□ 1.5
IFT140-206ENST00000565298 FGD1P98174 961 aa24.39■■□□□ 1.5
IFT140-206ENST00000565298 ST20-MTHFSA0A0A6YYL1 179 aa24.39■■□□□ 1.5
IFT140-206ENST00000565298 ANP32EQ9BTT0 268 aa24.39■■□□□ 1.5
IFT140-206ENST00000565298 CDK11BP21127 795 aaKnown RBP24.39■■□□□ 1.49
IFT140-206ENST00000565298 HDAC5Q9UQL6 1122 aa24.38■■□□□ 1.49
IFT140-206ENST00000565298 CUX1P39880 1505 aa24.38■■□□□ 1.49
IFT140-206ENST00000565298 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.38■■□□□ 1.49
IFT140-206ENST00000565298 FGD6Q6ZV73 1430 aa24.37■■□□□ 1.49
IFT140-206ENST00000565298 TOPBP1Q92547 1522 aa24.37■■□□□ 1.49
IFT140-206ENST00000565298 ZNF330Q9Y3S2 320 aaPredicted RBP24.36■■□□□ 1.49
IFT140-206ENST00000565298 CASKIN1Q8WXD9 1431 aa24.36■■□□□ 1.49
IFT140-206ENST00000565298 CFAP44Q96MT7 982 aa24.35■■□□□ 1.49
IFT140-206ENST00000565298 ZNF644Q9H582 1327 aaPredicted RBP24.34■■□□□ 1.49
IFT140-206ENST00000565298 ZRSR1Q15695 479 aaKnown RBP24.34■■□□□ 1.49
IFT140-206ENST00000565298 PHLDB1Q86UU1 1377 aa24.33■■□□□ 1.49
IFT140-206ENST00000565298 COG3Q96JB2 828 aa24.32■■□□□ 1.48
IFT140-206ENST00000565298 LTV1Q96GA3 475 aaPredicted RBP24.32■■□□□ 1.48
IFT140-206ENST00000565298 CGNL1Q0VF96 1302 aa24.3■■□□□ 1.48
IFT140-206ENST00000565298 AEBP2Q6ZN18 517 aaPredicted RBP24.3■■□□□ 1.48
IFT140-206ENST00000565298 DHX57Q6P158 1386 aaKnown RBP24.3■■□□□ 1.48
IFT140-206ENST00000565298 POLA1P09884 1462 aaPredicted RBP24.3■■□□□ 1.48
IFT140-206ENST00000565298 AFAP1Q8N556 730 aa24.29■■□□□ 1.48
IFT140-206ENST00000565298 MINK1Q8N4C8 1332 aaPredicted RBP24.29■■□□□ 1.48
IFT140-206ENST00000565298 NBR1Q14596 966 aa24.29■■□□□ 1.48
IFT140-206ENST00000565298 FYCO1Q9BQS8 1478 aa24.28■■□□□ 1.48
IFT140-206ENST00000565298 ANKRD50Q9ULJ7 1429 aa24.28■■□□□ 1.48
IFT140-206ENST00000565298 PRDM2Q13029 1718 aa24.28■■□□□ 1.48
IFT140-206ENST00000565298 TMX4Q9H1E5 349 aaPredicted RBP24.28■■□□□ 1.48
IFT140-206ENST00000565298 ERICH3Q5RHP9 1530 aa24.28■■□□□ 1.48
IFT140-206ENST00000565298 PANK3Q9H999 370 aa24.26■■□□□ 1.47
IFT140-206ENST00000565298 RCAN3Q9UKA8 241 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms