RNA–Protein interactions for RNA: ENST00000562357.5

CMTM3-204, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 4

Gene CMTM3, Length 792 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-204ENST00000562357 ARID4BQ4LE39 1312 aaPredicted RBP28.49■■■□□ 2.15
CMTM3-204ENST00000562357 ZMYM4Q5VZL5 1548 aa28.48■■■□□ 2.15
CMTM3-204ENST00000562357 ARHGEF40Q8TER5 1519 aa28.48■■■□□ 2.15
CMTM3-204ENST00000562357 MAGI2Q86UL8 1455 aa28.46■■■□□ 2.15
CMTM3-204ENST00000562357 LOC105371045A0A1W2PR82 267 aa28.45■■■□□ 2.14
CMTM3-204ENST00000562357 MTUS2Q5JR59 1369 aa28.45■■■□□ 2.14
CMTM3-204ENST00000562357 ZFYVE16Q7Z3T8 1539 aa28.44■■■□□ 2.14
CMTM3-204ENST00000562357 PREX2Q70Z35 1606 aa28.42■■■□□ 2.14
CMTM3-204ENST00000562357 ZNF518AQ6AHZ1 1483 aa28.41■■■□□ 2.14
CMTM3-204ENST00000562357 YEATS2Q9ULM3 1422 aa28.38■■■□□ 2.13
CMTM3-204ENST00000562357 MYT1LQ9UL68 1186 aa28.37■■■□□ 2.13
CMTM3-204ENST00000562357 CDC42BPBQ9Y5S2 1711 aa28.37■■■□□ 2.13
CMTM3-204ENST00000562357 CCNB3Q8WWL7 1395 aa28.34■■■□□ 2.13
CMTM3-204ENST00000562357 EHBP1L1Q8N3D4 1523 aa28.33■■■□□ 2.13
CMTM3-204ENST00000562357 AFAP1Q8N556 730 aa28.32■■■□□ 2.12
CMTM3-204ENST00000562357 ZNF777Q9ULD5 760 aaPredicted RBP28.32■■■□□ 2.12
CMTM3-204ENST00000562357 ABCC1P33527 1531 aa28.32■■■□□ 2.12
CMTM3-204ENST00000562357 CDC42BPAQ5VT25 1732 aa28.32■■■□□ 2.12
CMTM3-204ENST00000562357 BCORL1Q5H9F3 1711 aa28.31■■■□□ 2.12
CMTM3-204ENST00000562357 ADAMTSL3P82987 1691 aa28.3■■■□□ 2.12
CMTM3-204ENST00000562357 GPATCH8Q9UKJ3 1502 aaKnown RBP28.3■■■□□ 2.12
CMTM3-204ENST00000562357 KDM5CP41229 1560 aa28.29■■■□□ 2.12
CMTM3-204ENST00000562357 ATP10AO60312 1499 aa28.29■■■□□ 2.12
CMTM3-204ENST00000562357 VPS8Q8N3P4 1428 aa28.29■■■□□ 2.12
CMTM3-204ENST00000562357 CFDP1Q9UEE9 299 aaPredicted RBP28.29■■■□□ 2.12
CMTM3-204ENST00000562357 C9orf84Q5VXU9 1444 aa28.28■■■□□ 2.12
CMTM3-204ENST00000562357 HECW2Q9P2P5 1572 aa28.26■■■□□ 2.11
CMTM3-204ENST00000562357 PTPRMP28827 1452 aa28.25■■■□□ 2.11
CMTM3-204ENST00000562357 PLEKHH2Q8IVE3 1493 aa28.24■■■□□ 2.11
CMTM3-204ENST00000562357 TRAPPC8Q9Y2L5 1435 aa28.24■■■□□ 2.11
CMTM3-204ENST00000562357 ITSN2Q9NZM3 1697 aa28.23■■■□□ 2.11
CMTM3-204ENST00000562357 MADDQ8WXG6 1647 aa28.23■■■□□ 2.11
CMTM3-204ENST00000562357 ILDR1Q86SU0 546 aaPredicted RBP28.23■■■□□ 2.11
CMTM3-204ENST00000562357 ARHGEF12Q9NZN5 1544 aa28.23■■■□□ 2.11
CMTM3-204ENST00000562357 MLH3Q9UHC1 1453 aa28.22■■■□□ 2.11
CMTM3-204ENST00000562357 MLECQ14165 292 aa28.21■■■□□ 2.11
CMTM3-204ENST00000562357 SAMD9LQ8IVG5 1584 aa28.2■■■□□ 2.11
CMTM3-204ENST00000562357 TIAM1Q13009 1591 aa28.19■■■□□ 2.1
CMTM3-204ENST00000562357 SYCP2Q9BX26 1530 aa28.18■■■□□ 2.1
CMTM3-204ENST00000562357 KIAA1107Q9UPP5 1409 aa28.18■■■□□ 2.1
CMTM3-204ENST00000562357 DIP2CQ9Y2E4 1556 aa28.16■■■□□ 2.1
CMTM3-204ENST00000562357 HNRNPMP52272 730 aaKnown RBP eCLIP28.15■■■□□ 2.1
CMTM3-204ENST00000562357 SUPT6HQ7KZ85 1726 aaKnown RBP28.15■■■□□ 2.1
CMTM3-204ENST00000562357 RIMS1Q86UR5 1692 aaKnown RBP28.14■■■□□ 2.1
CMTM3-204ENST00000562357 SPAG9O60271 1321 aaKnown RBP28.14■■■□□ 2.09
CMTM3-204ENST00000562357 SIGLEC1Q9BZZ2 1709 aa28.13■■■□□ 2.09
CMTM3-204ENST00000562357 NCOA2Q15596 1464 aa28.13■■■□□ 2.09
CMTM3-204ENST00000562357 REREQ9P2R6 1566 aa28.11■■■□□ 2.09
CMTM3-204ENST00000562357 ABCA6Q8N139 1617 aa28.11■■■□□ 2.09
CMTM3-204ENST00000562357 APLP2Q06481 763 aa28.09■■■□□ 2.09
CMTM3-204ENST00000562357 LRRC9Q6ZRR7 1453 aa28.08■■■□□ 2.09
CMTM3-204ENST00000562357 PLPPR3Q6T4P5 718 aa28.08■■■□□ 2.09
CMTM3-204ENST00000562357 MAP3K1Q13233 1512 aa28.08■■■□□ 2.08
CMTM3-204ENST00000562357 FER1L4A9Z1Z3 1794 aa28.06■■■□□ 2.08
CMTM3-204ENST00000562357 KIDINS220Q9ULH0 1771 aa28.06■■■□□ 2.08
CMTM3-204ENST00000562357 ZNF644Q9H582 1327 aaPredicted RBP28.04■■■□□ 2.08
CMTM3-204ENST00000562357 AGLP35573 1532 aa28.03■■■□□ 2.08
CMTM3-204ENST00000562357 ATP7AQ04656 1500 aa28.03■■■□□ 2.08
CMTM3-204ENST00000562357 ESF1Q9H501 851 aaKnown RBP28.03■■■□□ 2.08
CMTM3-204ENST00000562357 INO80Q9ULG1 1556 aaPredicted RBP27.98■■■□□ 2.07
CMTM3-204ENST00000562357 CAMSAP2Q08AD1 1489 aa27.97■■■□□ 2.07
CMTM3-204ENST00000562357 MBD5Q9P267 1494 aa27.97■■■□□ 2.07
CMTM3-204ENST00000562357 RSPH4AQ5TD94 716 aa27.97■■■□□ 2.07
CMTM3-204ENST00000562357 KANK4Q5T7N3 995 aaPredicted RBP27.96■■■□□ 2.07
CMTM3-204ENST00000562357 A2MP01023 1474 aa27.94■■■□□ 2.06
CMTM3-204ENST00000562357 CCDC141Q6ZP82 1450 aa27.94■■■□□ 2.06
CMTM3-204ENST00000562357 RTEL1-TNFRSF6BF6WH68 1400 aa27.92■■■□□ 2.06
CMTM3-204ENST00000562357 LMTK3Q96Q04 1460 aa27.9■■■□□ 2.06
CMTM3-204ENST00000562357 CNTLNQ9NXG0 1405 aa27.9■■■□□ 2.06
CMTM3-204ENST00000562357 MYOM3Q5VTT5 1437 aa27.88■■■□□ 2.05
CMTM3-204ENST00000562357 TSPY4P0CV99 314 aa27.87■■■□□ 2.05
CMTM3-204ENST00000562357 TSPY10P0CW01 314 aa27.87■■■□□ 2.05
CMTM3-204ENST00000562357 CEBPAP49715 358 aaPredicted RBP27.87■■■□□ 2.05
CMTM3-204ENST00000562357 PLXNC1O60486 1568 aa27.86■■■□□ 2.05
CMTM3-204ENST00000562357 MIA2Q96PC5 1412 aa27.86■■■□□ 2.05
CMTM3-204ENST00000562357 ADGBQ8N7X0 1667 aa27.86■■■□□ 2.05
CMTM3-204ENST00000562357 ARHGEF5Q12774 1597 aa27.85■■■□□ 2.05
CMTM3-204ENST00000562357 GGT6Q6P531 493 aa27.8■■■□□ 2.04
CMTM3-204ENST00000562357 DHX29Q7Z478 1369 aaKnown RBP27.79■■■□□ 2.04
CMTM3-204ENST00000562357 HSPA2P54652 639 aa27.78■■■□□ 2.04
CMTM3-204ENST00000562357 UHRF1BP1Q6BDS2 1440 aa27.77■■■□□ 2.04
CMTM3-204ENST00000562357 PPP6R1Q9UPN7 881 aa27.77■■■□□ 2.04
CMTM3-204ENST00000562357 PREX1Q8TCU6 1659 aa27.76■■■□□ 2.03
CMTM3-204ENST00000562357 C3P01024 1663 aa27.75■■■□□ 2.03
CMTM3-204ENST00000562357 MROH2AA6NES4 1674 aa27.72■■■□□ 2.03
CMTM3-204ENST00000562357 KIF3BO15066 747 aa27.72■■■□□ 2.03
CMTM3-204ENST00000562357 ZMYM3Q14202 1370 aa27.72■■■□□ 2.03
CMTM3-204ENST00000562357 SETD1BQ9UPS6 1966 aaKnown RBP27.69■■■□□ 2.02
CMTM3-204ENST00000562357 MAST1Q9Y2H9 1570 aa27.69■■■□□ 2.02
CMTM3-204ENST00000562357 NPATQ14207 1427 aa27.68■■■□□ 2.02
CMTM3-204ENST00000562357 CLTCQ00610 1675 aaKnown RBP27.67■■■□□ 2.02
CMTM3-204ENST00000562357 PTPN23Q9H3S7 1636 aa27.67■■■□□ 2.02
CMTM3-204ENST00000562357 FGD6Q6ZV73 1430 aa27.67■■■□□ 2.02
CMTM3-204ENST00000562357 FAM135AQ9P2D6 1515 aa27.62■■■□□ 2.01
CMTM3-204ENST00000562357 SHANK2Q9UPX8 1470 aa27.61■■■□□ 2.01
CMTM3-204ENST00000562357 WASHC2CQ9Y4E1 1318 aa27.6■■■□□ 2.01
CMTM3-204ENST00000562357 TCOF1Q13428 1488 aaKnown RBP27.59■■■□□ 2.01
CMTM3-204ENST00000562357 KDM5DQ9BY66 1539 aa27.59■■■□□ 2.01
CMTM3-204ENST00000562357 ABCC5O15440 1437 aa27.58■■■□□ 2.01
CMTM3-204ENST00000562357 DAPK1P53355 1430 aa27.57■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms