RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 DAPK1P53355 1430 aa31.61■■■□□ 2.65
CLN3-209ENST00000561689 WDR7Q9Y4E6 1490 aa31.61■■■□□ 2.65
CLN3-209ENST00000561689 ABCC5O15440 1437 aa31.61■■■□□ 2.65
CLN3-209ENST00000561689 RIMBP3CA6NJZ7 1639 aa31.59■■■□□ 2.65
CLN3-209ENST00000561689 RIMBP3BA6NNM3 1639 aa31.59■■■□□ 2.65
CLN3-209ENST00000561689 RIMBP3Q9UFD9 1639 aa31.59■■■□□ 2.65
CLN3-209ENST00000561689 HFM1A2PYH4 1435 aa31.58■■■□□ 2.65
CLN3-209ENST00000561689 ASXL2Q76L83 1435 aa31.58■■■□□ 2.65
CLN3-209ENST00000561689 RRP7BPQ9NSQ0 103 aa31.57■■■□□ 2.65
CLN3-209ENST00000561689 DHX57Q6P158 1386 aaKnown RBP31.57■■■□□ 2.64
CLN3-209ENST00000561689 DNMT1P26358 1616 aaKnown RBP31.56■■■□□ 2.64
CLN3-209ENST00000561689 PREX2Q70Z35 1606 aa31.55■■■□□ 2.64
CLN3-209ENST00000561689 NAIPQ13075 1403 aa31.54■■■□□ 2.64
CLN3-209ENST00000561689 CDC42BPBQ9Y5S2 1711 aa31.53■■■□□ 2.64
CLN3-209ENST00000561689 ARHGAP5Q13017 1502 aa31.52■■■□□ 2.64
CLN3-209ENST00000561689 HNRNPMP52272 730 aaKnown RBP eCLIP31.49■■■□□ 2.63
CLN3-209ENST00000561689 PLCH2O75038 1416 aa31.49■■■□□ 2.63
CLN3-209ENST00000561689 SAMD9LQ8IVG5 1584 aa31.47■■■□□ 2.63
CLN3-209ENST00000561689 MYO5CQ9NQX4 1742 aa31.46■■■□□ 2.63
CLN3-209ENST00000561689 AKNAQ7Z591 1439 aa31.46■■■□□ 2.63
CLN3-209ENST00000561689 ROCK1Q13464 1354 aa31.45■■■□□ 2.62
CLN3-209ENST00000561689 MBD5Q9P267 1494 aa31.42■■■□□ 2.62
CLN3-209ENST00000561689 EFCAB2Q5VUJ9 269 aa31.41■■■□□ 2.62
CLN3-209ENST00000561689 TSPY4P0CV99 314 aa31.37■■■□□ 2.61
CLN3-209ENST00000561689 TSPY10P0CW01 314 aa31.37■■■□□ 2.61
CLN3-209ENST00000561689 ABCA9Q8IUA7 1624 aa31.36■■■□□ 2.61
CLN3-209ENST00000561689 SYCP2Q9BX26 1530 aa31.35■■■□□ 2.61
CLN3-209ENST00000561689 NCOA1Q15788 1441 aa31.35■■■□□ 2.61
CLN3-209ENST00000561689 GCC2Q8IWJ2 1684 aa31.35■■■□□ 2.61
CLN3-209ENST00000561689 CROCC2H7BZ55 1655 aa31.35■■■□□ 2.61
CLN3-209ENST00000561689 CLSPNQ9HAW4 1339 aa31.35■■■□□ 2.61
CLN3-209ENST00000561689 ARHGEF5Q12774 1597 aa31.35■■■□□ 2.61
CLN3-209ENST00000561689 C9orf84Q5VXU9 1444 aa31.34■■■□□ 2.61
CLN3-209ENST00000561689 RSPH4AQ5TD94 716 aa31.33■■■□□ 2.61
CLN3-209ENST00000561689 KIAA1107Q9UPP5 1409 aa31.32■■■□□ 2.61
CLN3-209ENST00000561689 CCDC141Q6ZP82 1450 aa31.32■■■□□ 2.6
CLN3-209ENST00000561689 PLEKHH2Q8IVE3 1493 aa31.32■■■□□ 2.6
CLN3-209ENST00000561689 ADGRL2O95490 1459 aa31.32■■■□□ 2.6
CLN3-209ENST00000561689 SHANK2Q9UPX8 1470 aa31.32■■■□□ 2.6
CLN3-209ENST00000561689 ANKRD30AQ9BXX3 1397 aa31.31■■■□□ 2.6
CLN3-209ENST00000561689 KDM6BO15054 1643 aa31.31■■■□□ 2.6
CLN3-209ENST00000561689 ARAP3Q8WWN8 1544 aa31.3■■■□□ 2.6
CLN3-209ENST00000561689 ARHGEF12Q9NZN5 1544 aa31.29■■■□□ 2.6
CLN3-209ENST00000561689 ADGBQ8N7X0 1667 aa31.26■■■□□ 2.6
CLN3-209ENST00000561689 MAPKBP1O60336 1514 aa31.26■■■□□ 2.6
CLN3-209ENST00000561689 FANCAO15360 1455 aa31.26■■■□□ 2.59
CLN3-209ENST00000561689 TRIM52Q96A61 297 aa31.25■■■□□ 2.59
CLN3-209ENST00000561689 ABCC1P33527 1531 aa31.23■■■□□ 2.59
CLN3-209ENST00000561689 CD109Q6YHK3 1445 aa31.22■■■□□ 2.59
CLN3-209ENST00000561689 TRAPPC8Q9Y2L5 1435 aa31.19■■■□□ 2.58
CLN3-209ENST00000561689 KIF15Q9NS87 1388 aa31.18■■■□□ 2.58
CLN3-209ENST00000561689 ANKRD50Q9ULJ7 1429 aa31.16■■■□□ 2.58
CLN3-209ENST00000561689 AFAP1Q8N556 730 aa31.15■■■□□ 2.58
CLN3-209ENST00000561689 ADGRL1O94910 1474 aa31.12■■■□□ 2.57
CLN3-209ENST00000561689 MAST1Q9Y2H9 1570 aa31.12■■■□□ 2.57
CLN3-209ENST00000561689 SCAPERQ9BY12 1400 aa31.11■■■□□ 2.57
CLN3-209ENST00000561689 ACIN1Q9UKV3 1341 aaKnown RBP31.09■■■□□ 2.57
CLN3-209ENST00000561689 MPHOSPH9Q99550 1183 aa31.09■■■□□ 2.57
CLN3-209ENST00000561689 SIN3AQ96ST3 1273 aa31.08■■■□□ 2.57
CLN3-209ENST00000561689 SPAG9O60271 1321 aaKnown RBP31.07■■■□□ 2.56
CLN3-209ENST00000561689 FAM69CQ0P6D2 419 aa31.06■■■□□ 2.56
CLN3-209ENST00000561689 NEUROD1Q13562 356 aa31.04■■■□□ 2.56
CLN3-209ENST00000561689 DENND4BO75064 1496 aaPredicted RBP31.04■■■□□ 2.56
CLN3-209ENST00000561689 GLI2P10070 1586 aa31.01■■■□□ 2.55
CLN3-209ENST00000561689 SLC4A1APQ9BWU0 796 aaKnown RBP31■■■□□ 2.55
CLN3-209ENST00000561689 PLXNC1O60486 1568 aa31■■■□□ 2.55
CLN3-209ENST00000561689 MAP3K4Q9Y6R4 1608 aa30.98■■■□□ 2.55
CLN3-209ENST00000561689 CFAP74Q9C0B2 1584 aa30.97■■■□□ 2.55
CLN3-209ENST00000561689 DIP2BQ9P265 1576 aa30.97■■■□□ 2.55
CLN3-209ENST00000561689 FOXD1Q16676 465 aa30.97■■■□□ 2.55
CLN3-209ENST00000561689 RTEL1-TNFRSF6BF6WH68 1400 aa30.97■■■□□ 2.55
CLN3-209ENST00000561689 MYT1LQ9UL68 1186 aa30.96■■■□□ 2.55
CLN3-209ENST00000561689 PZPP20742 1482 aa30.95■■■□□ 2.54
CLN3-209ENST00000561689 ZFYVE16Q7Z3T8 1539 aa30.95■■■□□ 2.54
CLN3-209ENST00000561689 NEO1Q92859 1461 aa30.94■■■□□ 2.54
CLN3-209ENST00000561689 NUP155O75694 1391 aa30.94■■■□□ 2.54
CLN3-209ENST00000561689 DUOX2Q9NRD8 1548 aa30.93■■■□□ 2.54
CLN3-209ENST00000561689 ZNF518AQ6AHZ1 1483 aa30.91■■■□□ 2.54
CLN3-209ENST00000561689 POGZQ7Z3K3 1410 aa30.9■■■□□ 2.54
CLN3-209ENST00000561689 ATP7AQ04656 1500 aa30.89■■■□□ 2.54
CLN3-209ENST00000561689 INO80Q9ULG1 1556 aaPredicted RBP30.88■■■□□ 2.53
CLN3-209ENST00000561689 ERBINQ96RT1 1412 aa30.87■■■□□ 2.53
CLN3-209ENST00000561689 RAPGEF3O95398 923 aa30.85■■■□□ 2.53
CLN3-209ENST00000561689 PKD2Q13563 968 aa30.84■■■□□ 2.53
CLN3-209ENST00000561689 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.84■■■□□ 2.53
CLN3-209ENST00000561689 KDM5DQ9BY66 1539 aa30.82■■■□□ 2.52
CLN3-209ENST00000561689 ANKRD30BQ9BXX2 1392 aa30.82■■■□□ 2.52
CLN3-209ENST00000561689 TIMELESSQ9UNS1 1208 aa30.81■■■□□ 2.52
CLN3-209ENST00000561689 KDM5CP41229 1560 aa30.79■■■□□ 2.52
CLN3-209ENST00000561689 KIDINS220Q9ULH0 1771 aa30.76■■■□□ 2.52
CLN3-209ENST00000561689 TONSLQ96HA7 1378 aa30.76■■■□□ 2.52
CLN3-209ENST00000561689 UNC13BO14795 1591 aa30.76■■■□□ 2.51
CLN3-209ENST00000561689 MLH3Q9UHC1 1453 aa30.75■■■□□ 2.51
CLN3-209ENST00000561689 TSPOAP1O95153 1857 aa30.75■■■□□ 2.51
CLN3-209ENST00000561689 FAM135AQ9P2D6 1515 aa30.75■■■□□ 2.51
CLN3-209ENST00000561689 DHX29Q7Z478 1369 aaKnown RBP30.75■■■□□ 2.51
CLN3-209ENST00000561689 PPRC1Q5VV67 1664 aaKnown RBP30.72■■■□□ 2.51
CLN3-209ENST00000561689 TEX14Q8IWB6 1497 aa30.71■■■□□ 2.51
CLN3-209ENST00000561689 HECW2Q9P2P5 1572 aa30.7■■■□□ 2.51
CLN3-209ENST00000561689 KIF13AQ9H1H9 1805 aa30.7■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms