RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 CDK11AQ9UQ88 783 aaPredicted RBP26.01■■□□□ 1.75
LMX1B-204ENST00000561065 POGZQ7Z3K3 1410 aa26■■□□□ 1.75
LMX1B-204ENST00000561065 PREX2Q70Z35 1606 aa25.99■■□□□ 1.75
LMX1B-204ENST00000561065 ZFYVE16Q7Z3T8 1539 aa25.98■■□□□ 1.75
LMX1B-204ENST00000561065 YEATS2Q9ULM3 1422 aa25.98■■□□□ 1.75
LMX1B-204ENST00000561065 ARHGAP5Q13017 1502 aa25.97■■□□□ 1.75
LMX1B-204ENST00000561065 SCAPERQ9BY12 1400 aa25.97■■□□□ 1.75
LMX1B-204ENST00000561065 CDC42BPAQ5VT25 1732 aa25.95■■□□□ 1.75
LMX1B-204ENST00000561065 MADDQ8WXG6 1647 aa25.95■■□□□ 1.74
LMX1B-204ENST00000561065 HECW2Q9P2P5 1572 aa25.93■■□□□ 1.74
LMX1B-204ENST00000561065 MAGI2Q86UL8 1455 aa25.91■■□□□ 1.74
LMX1B-204ENST00000561065 CEP162Q5TB80 1403 aa25.91■■□□□ 1.74
LMX1B-204ENST00000561065 KDM5CP41229 1560 aa25.9■■□□□ 1.74
LMX1B-204ENST00000561065 EFCAB2Q5VUJ9 269 aa25.88■■□□□ 1.73
LMX1B-204ENST00000561065 ABCC1P33527 1531 aa25.88■■□□□ 1.73
LMX1B-204ENST00000561065 PTPRMP28827 1452 aa25.88■■□□□ 1.73
LMX1B-204ENST00000561065 ITSN2Q9NZM3 1697 aa25.87■■□□□ 1.73
LMX1B-204ENST00000561065 RIMS1Q86UR5 1692 aaKnown RBP25.86■■□□□ 1.73
LMX1B-204ENST00000561065 ZNF518AQ6AHZ1 1483 aa25.85■■□□□ 1.73
LMX1B-204ENST00000561065 ARHGEF12Q9NZN5 1544 aa25.84■■□□□ 1.73
LMX1B-204ENST00000561065 ARID4BQ4LE39 1312 aaPredicted RBP25.82■■□□□ 1.72
LMX1B-204ENST00000561065 SAMD9LQ8IVG5 1584 aa25.8■■□□□ 1.72
LMX1B-204ENST00000561065 DIP2CQ9Y2E4 1556 aa25.79■■□□□ 1.72
LMX1B-204ENST00000561065 ABCA6Q8N139 1617 aa25.79■■□□□ 1.72
LMX1B-204ENST00000561065 C9orf84Q5VXU9 1444 aa25.78■■□□□ 1.72
LMX1B-204ENST00000561065 TRAPPC8Q9Y2L5 1435 aa25.78■■□□□ 1.72
LMX1B-204ENST00000561065 ATP10AO60312 1499 aa25.77■■□□□ 1.72
LMX1B-204ENST00000561065 GPATCH8Q9UKJ3 1502 aaKnown RBP25.77■■□□□ 1.72
LMX1B-204ENST00000561065 FER1L4A9Z1Z3 1794 aa25.77■■□□□ 1.72
LMX1B-204ENST00000561065 AFAP1Q8N556 730 aa25.75■■□□□ 1.71
LMX1B-204ENST00000561065 EHBP1L1Q8N3D4 1523 aa25.74■■□□□ 1.71
LMX1B-204ENST00000561065 SYCP2Q9BX26 1530 aa25.73■■□□□ 1.71
LMX1B-204ENST00000561065 KIDINS220Q9ULH0 1771 aa25.73■■□□□ 1.71
LMX1B-204ENST00000561065 TIAM1Q13009 1591 aa25.72■■□□□ 1.71
LMX1B-204ENST00000561065 REREQ9P2R6 1566 aa25.72■■□□□ 1.71
LMX1B-204ENST00000561065 MLH3Q9UHC1 1453 aa25.72■■□□□ 1.71
LMX1B-204ENST00000561065 MTUS2Q5JR59 1369 aa25.7■■□□□ 1.7
LMX1B-204ENST00000561065 LOC105371045A0A1W2PR82 267 aa25.69■■□□□ 1.7
LMX1B-204ENST00000561065 MLECQ14165 292 aa25.64■■□□□ 1.7
LMX1B-204ENST00000561065 LMTK3Q96Q04 1460 aa25.64■■□□□ 1.69
LMX1B-204ENST00000561065 CCNB3Q8WWL7 1395 aa25.63■■□□□ 1.69
LMX1B-204ENST00000561065 INO80Q9ULG1 1556 aaPredicted RBP25.62■■□□□ 1.69
LMX1B-204ENST00000561065 VPS8Q8N3P4 1428 aa25.61■■□□□ 1.69
LMX1B-204ENST00000561065 ZNF777Q9ULD5 760 aaPredicted RBP25.61■■□□□ 1.69
LMX1B-204ENST00000561065 AGLP35573 1532 aa25.59■■□□□ 1.69
LMX1B-204ENST00000561065 SUPT6HQ7KZ85 1726 aaKnown RBP25.59■■□□□ 1.69
LMX1B-204ENST00000561065 KIAA1107Q9UPP5 1409 aa25.58■■□□□ 1.69
LMX1B-204ENST00000561065 PLEKHH2Q8IVE3 1493 aa25.58■■□□□ 1.69
LMX1B-204ENST00000561065 ATP7AQ04656 1500 aa25.57■■□□□ 1.68
LMX1B-204ENST00000561065 CFDP1Q9UEE9 299 aaPredicted RBP25.56■■□□□ 1.68
LMX1B-204ENST00000561065 MYT1LQ9UL68 1186 aa25.56■■□□□ 1.68
LMX1B-204ENST00000561065 NCOA2Q15596 1464 aa25.55■■□□□ 1.68
LMX1B-204ENST00000561065 HNRNPMP52272 730 aaKnown RBP eCLIP25.54■■□□□ 1.68
LMX1B-204ENST00000561065 PLPPR3Q6T4P5 718 aa25.53■■□□□ 1.68
LMX1B-204ENST00000561065 PLXNC1O60486 1568 aa25.53■■□□□ 1.68
LMX1B-204ENST00000561065 MBD5Q9P267 1494 aa25.51■■□□□ 1.67
LMX1B-204ENST00000561065 ZNF644Q9H582 1327 aaPredicted RBP25.51■■□□□ 1.67
LMX1B-204ENST00000561065 C3P01024 1663 aa25.5■■□□□ 1.67
LMX1B-204ENST00000561065 LRRC9Q6ZRR7 1453 aa25.49■■□□□ 1.67
LMX1B-204ENST00000561065 PREX1Q8TCU6 1659 aa25.48■■□□□ 1.67
LMX1B-204ENST00000561065 SPAG9O60271 1321 aaKnown RBP25.48■■□□□ 1.67
LMX1B-204ENST00000561065 CAMSAP2Q08AD1 1489 aa25.46■■□□□ 1.67
LMX1B-204ENST00000561065 MAP3K1Q13233 1512 aa25.45■■□□□ 1.66
LMX1B-204ENST00000561065 ADGBQ8N7X0 1667 aa25.45■■□□□ 1.66
LMX1B-204ENST00000561065 CEBPAP49715 358 aaPredicted RBP25.43■■□□□ 1.66
LMX1B-204ENST00000561065 A2MP01023 1474 aa25.42■■□□□ 1.66
LMX1B-204ENST00000561065 HSPA2P54652 639 aa25.4■■□□□ 1.66
LMX1B-204ENST00000561065 MROH2AA6NES4 1674 aa25.4■■□□□ 1.66
LMX1B-204ENST00000561065 CCDC141Q6ZP82 1450 aa25.39■■□□□ 1.65
LMX1B-204ENST00000561065 ARHGEF5Q12774 1597 aa25.37■■□□□ 1.65
LMX1B-204ENST00000561065 KANK4Q5T7N3 995 aaPredicted RBP25.37■■□□□ 1.65
LMX1B-204ENST00000561065 CLTCQ00610 1675 aaKnown RBP25.36■■□□□ 1.65
LMX1B-204ENST00000561065 RTEL1-TNFRSF6BF6WH68 1400 aa25.35■■□□□ 1.65
LMX1B-204ENST00000561065 CNTLNQ9NXG0 1405 aa25.34■■□□□ 1.65
LMX1B-204ENST00000561065 SETD1BQ9UPS6 1966 aaKnown RBP25.33■■□□□ 1.64
LMX1B-204ENST00000561065 UHRF1BP1Q6BDS2 1440 aa25.3■■□□□ 1.64
LMX1B-204ENST00000561065 ILDR1Q86SU0 546 aaPredicted RBP25.29■■□□□ 1.64
LMX1B-204ENST00000561065 STRCQ7RTU9 1775 aa25.28■■□□□ 1.64
LMX1B-204ENST00000561065 MYOM3Q5VTT5 1437 aa25.28■■□□□ 1.64
LMX1B-204ENST00000561065 MAST1Q9Y2H9 1570 aa25.25■■□□□ 1.63
LMX1B-204ENST00000561065 ESF1Q9H501 851 aaKnown RBP25.24■■□□□ 1.63
LMX1B-204ENST00000561065 DHX29Q7Z478 1369 aaKnown RBP25.23■■□□□ 1.63
LMX1B-204ENST00000561065 MIA2Q96PC5 1412 aa25.23■■□□□ 1.63
LMX1B-204ENST00000561065 ZMYM3Q14202 1370 aa25.22■■□□□ 1.63
LMX1B-204ENST00000561065 MYO3AQ8NEV4 1616 aa25.21■■□□□ 1.63
LMX1B-204ENST00000561065 NPATQ14207 1427 aa25.21■■□□□ 1.63
LMX1B-204ENST00000561065 CROCC2H7BZ55 1655 aa25.2■■□□□ 1.63
LMX1B-204ENST00000561065 GGT6Q6P531 493 aa25.19■■□□□ 1.62
LMX1B-204ENST00000561065 ZNF142P52746 1687 aaPredicted RBP25.19■■□□□ 1.62
LMX1B-204ENST00000561065 PTPRKQ15262 1439 aa25.17■■□□□ 1.62
LMX1B-204ENST00000561065 RSPH4AQ5TD94 716 aa25.17■■□□□ 1.62
LMX1B-204ENST00000561065 PTPN23Q9H3S7 1636 aa25.17■■□□□ 1.62
LMX1B-204ENST00000561065 RNF17Q9BXT8 1623 aaKnown RBP25.15■■□□□ 1.62
LMX1B-204ENST00000561065 KDM5DQ9BY66 1539 aa25.15■■□□□ 1.62
LMX1B-204ENST00000561065 FAM135AQ9P2D6 1515 aa25.14■■□□□ 1.62
LMX1B-204ENST00000561065 EIF2AK4Q9P2K8 1649 aaKnown RBP25.12■■□□□ 1.61
LMX1B-204ENST00000561065 CEP170BQ9Y4F5 1589 aaPredicted RBP25.11■■□□□ 1.61
LMX1B-204ENST00000561065 KIF3BO15066 747 aa25.11■■□□□ 1.61
LMX1B-204ENST00000561065 MROH1Q8NDA8 1641 aa25.1■■□□□ 1.61
LMX1B-204ENST00000561065 NCOA1Q15788 1441 aa25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms