RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 NISCHQ9Y2I1 1504 aa39.87■■■■□ 3.97
LMX1B-204ENST00000561065 CCDC180Q9P1Z9 1646 aa35.71■■■■□ 3.31
LMX1B-204ENST00000561065 ABCC9O60706 1549 aa35.31■■■■□ 3.24
LMX1B-204ENST00000561065 RB1CC1Q8TDY2 1594 aa33.75■■■□□ 2.99
LMX1B-204ENST00000561065 NACADO15069 1562 aa33.6■■■□□ 2.97
LMX1B-204ENST00000561065 DCAF8L2P0C7V8 631 aa33.28■■■□□ 2.92
LMX1B-204ENST00000561065 MYO15BQ96JP2 1530 aa33.25■■■□□ 2.91
LMX1B-204ENST00000561065 ZCCHC6Q5VYS8 1495 aaKnown RBP33.17■■■□□ 2.9
LMX1B-204ENST00000561065 UNC13AQ9UPW8 1703 aa33.17■■■□□ 2.9
LMX1B-204ENST00000561065 DCAF1Q9Y4B6 1507 aa32.96■■■□□ 2.87
LMX1B-204ENST00000561065 BICRAQ9NZM4 1560 aa32.86■■■□□ 2.85
LMX1B-204ENST00000561065 PABPN1Q86U42 306 aaKnown RBP eCLIP32.84■■■□□ 2.85
LMX1B-204ENST00000561065 DNAJC5BQ9UF47 199 aa32.8■■■□□ 2.84
LMX1B-204ENST00000561065 SCRIBQ14160 1630 aa32.56■■■□□ 2.8
LMX1B-204ENST00000561065 SHROOM4Q9ULL8 1493 aa32.35■■■□□ 2.77
LMX1B-204ENST00000561065 EIF4G1Q04637 1599 aaKnown RBP31.98■■■□□ 2.71
LMX1B-204ENST00000561065 CC2D2AQ9P2K1 1620 aa31.96■■■□□ 2.71
LMX1B-204ENST00000561065 CECR2Q9BXF3 1484 aa31.75■■■□□ 2.67
LMX1B-204ENST00000561065 SMARCA4P51532 1647 aa31.09■■■□□ 2.57
LMX1B-204ENST00000561065 NCAPD3P42695 1498 aa30.98■■■□□ 2.55
LMX1B-204ENST00000561065 ATAD2BQ9ULI0 1458 aa30.97■■■□□ 2.55
LMX1B-204ENST00000561065 BAZ1AQ9NRL2 1556 aaPredicted RBP30.92■■■□□ 2.54
LMX1B-204ENST00000561065 SMARCA2P51531 1590 aa30.89■■■□□ 2.54
LMX1B-204ENST00000561065 HMGXB3Q12766 1538 aa30.86■■■□□ 2.53
LMX1B-204ENST00000561065 PEG3Q9GZU2 1588 aa30.78■■■□□ 2.52
LMX1B-204ENST00000561065 MROH2BQ7Z745 1585 aa30.76■■■□□ 2.52
LMX1B-204ENST00000561065 BAZ1BQ9UIG0 1483 aaKnown RBP30.68■■■□□ 2.5
LMX1B-204ENST00000561065 NESP48681 1621 aa30.46■■■□□ 2.47
LMX1B-204ENST00000561065 WIZO95785 1651 aa30.43■■■□□ 2.46
LMX1B-204ENST00000561065 ERCC6Q03468 1493 aa30.4■■■□□ 2.46
LMX1B-204ENST00000561065 LAMC3Q9Y6N6 1575 aa30.28■■■□□ 2.44
LMX1B-204ENST00000561065 CUX2O14529 1486 aa30.28■■■□□ 2.44
LMX1B-204ENST00000561065 RSF1Q96T23 1441 aaPredicted RBP30.19■■■□□ 2.42
LMX1B-204ENST00000561065 THOC2Q8NI27 1593 aaKnown RBP30.17■■■□□ 2.42
LMX1B-204ENST00000561065 KIF21AQ7Z4S6 1674 aa30.16■■■□□ 2.42
LMX1B-204ENST00000561065 TOP2AP11388 1531 aaKnown RBP30.05■■■□□ 2.4
LMX1B-204ENST00000561065 CADPSQ9ULU8 1353 aa30.03■■■□□ 2.4
LMX1B-204ENST00000561065 PDS5BQ9NTI5 1447 aa29.99■■■□□ 2.39
LMX1B-204ENST00000561065 CFTRP13569 1480 aa29.81■■■□□ 2.36
LMX1B-204ENST00000561065 MRC2Q9UBG0 1479 aa29.8■■■□□ 2.36
LMX1B-204ENST00000561065 DNAJC5Q9H3Z4 198 aa29.79■■■□□ 2.36
LMX1B-204ENST00000561065 WDR62O43379 1518 aa29.78■■■□□ 2.36
LMX1B-204ENST00000561065 CEP164Q9UPV0 1460 aa29.74■■■□□ 2.35
LMX1B-204ENST00000561065 FANCD2Q9BXW9 1451 aa29.74■■■□□ 2.35
LMX1B-204ENST00000561065 PRDM2Q13029 1718 aa29.68■■■□□ 2.34
LMX1B-204ENST00000561065 CCDC88BA6NC98 1476 aa29.65■■■□□ 2.34
LMX1B-204ENST00000561065 URB2Q14146 1524 aaKnown RBP29.53■■■□□ 2.32
LMX1B-204ENST00000561065 TOPBP1Q92547 1522 aa29.24■■■□□ 2.27
LMX1B-204ENST00000561065 DNMBPQ6XZF7 1577 aa29.18■■■□□ 2.26
LMX1B-204ENST00000561065 IFT140Q96RY7 1462 aa29.11■■■□□ 2.25
LMX1B-204ENST00000561065 ZNF608Q9ULD9 1512 aaPredicted RBP29.1■■■□□ 2.25
LMX1B-204ENST00000561065 ABCC8Q09428 1581 aa29.09■■■□□ 2.25
LMX1B-204ENST00000561065 TARBP1Q13395 1621 aaKnown RBP29.01■■■□□ 2.24
LMX1B-204ENST00000561065 EIF4G3O43432 1585 aaKnown RBP29.01■■■□□ 2.23
LMX1B-204ENST00000561065 POLA1P09884 1462 aaPredicted RBP28.97■■■□□ 2.23
LMX1B-204ENST00000561065 SUPT5HO00267 1087 aaKnown RBP28.96■■■□□ 2.23
LMX1B-204ENST00000561065 CUX1P39880 1505 aa28.89■■■□□ 2.22
LMX1B-204ENST00000561065 RAD54L2Q9Y4B4 1467 aa28.84■■■□□ 2.21
LMX1B-204ENST00000561065 FGD5Q6ZNL6 1462 aa28.83■■■□□ 2.21
LMX1B-204ENST00000561065 AQRO60306 1485 aaKnown RBP eCLIP28.81■■■□□ 2.2
LMX1B-204ENST00000561065 OSCARQ8IYS5 282 aa28.8■■■□□ 2.2
LMX1B-204ENST00000561065 CHD1O14646 1710 aa28.75■■■□□ 2.19
LMX1B-204ENST00000561065 SOGA1O94964 1423 aa28.74■■■□□ 2.19
LMX1B-204ENST00000561065 WDR97A6NE52 1622 aa28.74■■■□□ 2.19
LMX1B-204ENST00000561065 TDRD9Q8NDG6 1382 aaKnown RBP28.66■■■□□ 2.18
LMX1B-204ENST00000561065 RIMBP3CA6NJZ7 1639 aa28.61■■■□□ 2.17
LMX1B-204ENST00000561065 RIMBP3BA6NNM3 1639 aa28.61■■■□□ 2.17
LMX1B-204ENST00000561065 RIMBP3Q9UFD9 1639 aa28.61■■■□□ 2.17
LMX1B-204ENST00000561065 TRIM41Q8WV44 630 aa28.61■■■□□ 2.17
LMX1B-204ENST00000561065 SNAPC4Q5SXM2 1469 aa28.58■■■□□ 2.17
LMX1B-204ENST00000561065 PBRM1Q86U86 1689 aa28.55■■■□□ 2.16
LMX1B-204ENST00000561065 BIVM-ERCC5R4GMW8 1640 aa28.55■■■□□ 2.16
LMX1B-204ENST00000561065 ARHGEF11O15085 1522 aa28.53■■■□□ 2.16
LMX1B-204ENST00000561065 SYNJ1O43426 1573 aa28.53■■■□□ 2.16
LMX1B-204ENST00000561065 ABCA5Q8WWZ7 1642 aa28.52■■■□□ 2.16
LMX1B-204ENST00000561065 ABCA10Q8WWZ4 1543 aa28.51■■■□□ 2.15
LMX1B-204ENST00000561065 TOP2BQ02880 1626 aa28.51■■■□□ 2.15
LMX1B-204ENST00000561065 GRIN2BQ13224 1484 aa28.5■■■□□ 2.15
LMX1B-204ENST00000561065 MAGI1Q96QZ7 1491 aaPredicted RBP28.49■■■□□ 2.15
LMX1B-204ENST00000561065 WRNQ14191 1432 aaPredicted RBP eCLIP28.46■■■□□ 2.15
LMX1B-204ENST00000561065 GAPVD1Q14C86 1478 aa28.45■■■□□ 2.14
LMX1B-204ENST00000561065 FBLN2P98095 1184 aa28.43■■■□□ 2.14
LMX1B-204ENST00000561065 CLASP1Q7Z460 1538 aa28.4■■■□□ 2.14
LMX1B-204ENST00000561065 SYNJ2O15056 1496 aa28.38■■■□□ 2.13
LMX1B-204ENST00000561065 ARAP1Q96P48 1450 aa28.29■■■□□ 2.12
LMX1B-204ENST00000561065 CHMP7Q8WUX9 453 aaPredicted RBP28.28■■■□□ 2.12
LMX1B-204ENST00000561065 ADAMTS12P58397 1594 aa28.28■■■□□ 2.12
LMX1B-204ENST00000561065 GRIN2AQ12879 1464 aa28.17■■■□□ 2.1
LMX1B-204ENST00000561065 ERICH3Q5RHP9 1530 aa28.15■■■□□ 2.1
LMX1B-204ENST00000561065 CYB5RLQ6IPT4 315 aa28.14■■■□□ 2.09
LMX1B-204ENST00000561065 CEP170Q5SW79 1584 aa28.12■■■□□ 2.09
LMX1B-204ENST00000561065 FHAD1B1AJZ9 1412 aa28.08■■■□□ 2.09
LMX1B-204ENST00000561065 NUP160Q12769 1436 aa28.08■■■□□ 2.09
LMX1B-204ENST00000561065 ERCC6L2Q5T890 1561 aa28■■■□□ 2.07
LMX1B-204ENST00000561065 SHROOM2Q13796 1616 aa27.97■■■□□ 2.07
LMX1B-204ENST00000561065 RUSC2Q8N2Y8 1516 aa27.88■■■□□ 2.05
LMX1B-204ENST00000561065 CUL7Q14999 1698 aa27.85■■■□□ 2.05
LMX1B-204ENST00000561065 KIF27Q86VH2 1401 aa27.84■■■□□ 2.05
LMX1B-204ENST00000561065 IGF1RP08069 1367 aa27.8■■■□□ 2.04
LMX1B-204ENST00000561065 PRG4Q92954 1404 aaPredicted RBP27.71■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 299.9 ms