RNA–Protein interactions for RNA: ENST00000560825.5

GABPB1-210, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,412 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-210ENST00000560825 TROQ12816 1431 aaPredicted RBP18.32■□□□□ 0.52
GABPB1-210ENST00000560825 HECW2Q9P2P5 1572 aa18.32■□□□□ 0.52
GABPB1-210ENST00000560825 CLIP1P30622 1438 aa18.32■□□□□ 0.52
GABPB1-210ENST00000560825 YEATS2Q9ULM3 1422 aa18.32■□□□□ 0.52
GABPB1-210ENST00000560825 ZMYM4Q5VZL5 1548 aa18.31■□□□□ 0.52
GABPB1-210ENST00000560825 MADDQ8WXG6 1647 aa18.31■□□□□ 0.52
GABPB1-210ENST00000560825 CDC42BPAQ5VT25 1732 aa18.31■□□□□ 0.52
GABPB1-210ENST00000560825 PREX2Q70Z35 1606 aa18.28■□□□□ 0.52
GABPB1-210ENST00000560825 SCAPERQ9BY12 1400 aa18.28■□□□□ 0.52
GABPB1-210ENST00000560825 FYCO1Q9BQS8 1478 aa18.28■□□□□ 0.52
GABPB1-210ENST00000560825 POGZQ7Z3K3 1410 aa18.27■□□□□ 0.52
GABPB1-210ENST00000560825 ARHGAP5Q13017 1502 aa18.25■□□□□ 0.51
GABPB1-210ENST00000560825 CCDC18Q5T9S5 1454 aa18.25■□□□□ 0.51
GABPB1-210ENST00000560825 ZFYVE16Q7Z3T8 1539 aa18.25■□□□□ 0.51
GABPB1-210ENST00000560825 RIMS1Q86UR5 1692 aaKnown RBP18.25■□□□□ 0.51
GABPB1-210ENST00000560825 ARHGEF12Q9NZN5 1544 aa18.24■□□□□ 0.51
GABPB1-210ENST00000560825 PTPRMP28827 1452 aa18.23■□□□□ 0.51
GABPB1-210ENST00000560825 ITSN2Q9NZM3 1697 aa18.23■□□□□ 0.51
GABPB1-210ENST00000560825 PIAS4Q8N2W9 510 aaPredicted RBP18.22■□□□□ 0.51
GABPB1-210ENST00000560825 KDM5CP41229 1560 aa18.2■□□□□ 0.5
GABPB1-210ENST00000560825 CDK11AQ9UQ88 783 aaPredicted RBP18.2■□□□□ 0.5
GABPB1-210ENST00000560825 ABCC1P33527 1531 aa18.19■□□□□ 0.5
GABPB1-210ENST00000560825 CEP162Q5TB80 1403 aa18.19■□□□□ 0.5
GABPB1-210ENST00000560825 ARID4BQ4LE39 1312 aaPredicted RBP18.18■□□□□ 0.5
GABPB1-210ENST00000560825 ABCA6Q8N139 1617 aa18.18■□□□□ 0.5
GABPB1-210ENST00000560825 LOC105371045A0A1W2PR82 267 aa18.18■□□□□ 0.5
GABPB1-210ENST00000560825 EFCAB2Q5VUJ9 269 aa18.18■□□□□ 0.5
GABPB1-210ENST00000560825 AFAP1Q8N556 730 aa18.18■□□□□ 0.5
GABPB1-210ENST00000560825 FER1L4A9Z1Z3 1794 aa18.18■□□□□ 0.5
GABPB1-210ENST00000560825 SAMD9LQ8IVG5 1584 aa18.17■□□□□ 0.5
GABPB1-210ENST00000560825 DIP2CQ9Y2E4 1556 aa18.17■□□□□ 0.5
GABPB1-210ENST00000560825 TRAPPC8Q9Y2L5 1435 aa18.16■□□□□ 0.5
GABPB1-210ENST00000560825 MAGI2Q86UL8 1455 aa18.16■□□□□ 0.5
GABPB1-210ENST00000560825 KIDINS220Q9ULH0 1771 aa18.14■□□□□ 0.5
GABPB1-210ENST00000560825 ZNF518AQ6AHZ1 1483 aa18.14■□□□□ 0.49
GABPB1-210ENST00000560825 GPATCH8Q9UKJ3 1502 aaKnown RBP18.13■□□□□ 0.49
GABPB1-210ENST00000560825 PLPPR3Q6T4P5 718 aa18.13■□□□□ 0.49
GABPB1-210ENST00000560825 MLECQ14165 292 aa18.12■□□□□ 0.49
GABPB1-210ENST00000560825 ATP10AO60312 1499 aa18.11■□□□□ 0.49
GABPB1-210ENST00000560825 SYCP2Q9BX26 1530 aa18.1■□□□□ 0.49
GABPB1-210ENST00000560825 TIAM1Q13009 1591 aa18.1■□□□□ 0.49
GABPB1-210ENST00000560825 C9orf84Q5VXU9 1444 aa18.09■□□□□ 0.49
GABPB1-210ENST00000560825 LMTK3Q96Q04 1460 aa18.07■□□□□ 0.48
GABPB1-210ENST00000560825 MLH3Q9UHC1 1453 aa18.06■□□□□ 0.48
GABPB1-210ENST00000560825 ZNF777Q9ULD5 760 aaPredicted RBP18.06■□□□□ 0.48
GABPB1-210ENST00000560825 REREQ9P2R6 1566 aa18.04■□□□□ 0.48
GABPB1-210ENST00000560825 EHBP1L1Q8N3D4 1523 aa18.04■□□□□ 0.48
GABPB1-210ENST00000560825 HNRNPMP52272 730 aaKnown RBP eCLIP18.03■□□□□ 0.48
GABPB1-210ENST00000560825 ZNF644Q9H582 1327 aaPredicted RBP18.03■□□□□ 0.48
GABPB1-210ENST00000560825 SUPT6HQ7KZ85 1726 aaKnown RBP18.02■□□□□ 0.48
GABPB1-210ENST00000560825 MTUS2Q5JR59 1369 aa18.02■□□□□ 0.48
GABPB1-210ENST00000560825 INO80Q9ULG1 1556 aaPredicted RBP18.01■□□□□ 0.47
GABPB1-210ENST00000560825 C3P01024 1663 aa18.01■□□□□ 0.47
GABPB1-210ENST00000560825 CEBPAP49715 358 aaPredicted RBP18■□□□□ 0.47
GABPB1-210ENST00000560825 CCNB3Q8WWL7 1395 aa17.99■□□□□ 0.47
GABPB1-210ENST00000560825 MYT1LQ9UL68 1186 aa17.98■□□□□ 0.47
GABPB1-210ENST00000560825 ATP7AQ04656 1500 aa17.98■□□□□ 0.47
GABPB1-210ENST00000560825 HSPA2P54652 639 aa17.97■□□□□ 0.47
GABPB1-210ENST00000560825 NCOA2Q15596 1464 aa17.96■□□□□ 0.47
GABPB1-210ENST00000560825 CFDP1Q9UEE9 299 aaPredicted RBP17.96■□□□□ 0.47
GABPB1-210ENST00000560825 VPS8Q8N3P4 1428 aa17.96■□□□□ 0.47
GABPB1-210ENST00000560825 AGLP35573 1532 aa17.95■□□□□ 0.46
GABPB1-210ENST00000560825 ADGBQ8N7X0 1667 aa17.95■□□□□ 0.46
GABPB1-210ENST00000560825 PREX1Q8TCU6 1659 aa17.95■□□□□ 0.46
GABPB1-210ENST00000560825 MBD5Q9P267 1494 aa17.95■□□□□ 0.46
GABPB1-210ENST00000560825 PLXNC1O60486 1568 aa17.95■□□□□ 0.46
GABPB1-210ENST00000560825 KIAA1107Q9UPP5 1409 aa17.93■□□□□ 0.46
GABPB1-210ENST00000560825 ILDR1Q86SU0 546 aaPredicted RBP17.92■□□□□ 0.46
GABPB1-210ENST00000560825 KANK4Q5T7N3 995 aaPredicted RBP17.91■□□□□ 0.46
GABPB1-210ENST00000560825 SPAG9O60271 1321 aaKnown RBP17.91■□□□□ 0.46
GABPB1-210ENST00000560825 CLTCQ00610 1675 aaKnown RBP17.91■□□□□ 0.46
GABPB1-210ENST00000560825 LRRC9Q6ZRR7 1453 aa17.9■□□□□ 0.46
GABPB1-210ENST00000560825 STRCQ7RTU9 1775 aa17.9■□□□□ 0.46
GABPB1-210ENST00000560825 CAMSAP2Q08AD1 1489 aa17.9■□□□□ 0.46
GABPB1-210ENST00000560825 PLEKHH2Q8IVE3 1493 aa17.89■□□□□ 0.45
GABPB1-210ENST00000560825 PPP6R1Q9UPN7 881 aa17.89■□□□□ 0.45
GABPB1-210ENST00000560825 A2MP01023 1474 aa17.86■□□□□ 0.45
GABPB1-210ENST00000560825 MROH2AA6NES4 1674 aa17.86■□□□□ 0.45
GABPB1-210ENST00000560825 CCDC141Q6ZP82 1450 aa17.8■□□□□ 0.44
GABPB1-210ENST00000560825 MAP3K1Q13233 1512 aa17.8■□□□□ 0.44
GABPB1-210ENST00000560825 ARHGEF5Q12774 1597 aa17.8■□□□□ 0.44
GABPB1-210ENST00000560825 SETD1BQ9UPS6 1966 aaKnown RBP17.8■□□□□ 0.44
GABPB1-210ENST00000560825 ADRA2BP18089 450 aa17.79■□□□□ 0.44
GABPB1-210ENST00000560825 RTEL1-TNFRSF6BF6WH68 1400 aa17.76■□□□□ 0.43
GABPB1-210ENST00000560825 MYO3AQ8NEV4 1616 aa17.76■□□□□ 0.43
GABPB1-210ENST00000560825 UHRF1BP1Q6BDS2 1440 aa17.76■□□□□ 0.43
GABPB1-210ENST00000560825 ZMYM3Q14202 1370 aa17.75■□□□□ 0.43
GABPB1-210ENST00000560825 GGT6Q6P531 493 aa17.75■□□□□ 0.43
GABPB1-210ENST00000560825 CROCC2H7BZ55 1655 aa17.74■□□□□ 0.43
GABPB1-210ENST00000560825 MYOM3Q5VTT5 1437 aa17.73■□□□□ 0.43
GABPB1-210ENST00000560825 CNTLNQ9NXG0 1405 aa17.73■□□□□ 0.43
GABPB1-210ENST00000560825 DHX29Q7Z478 1369 aaKnown RBP17.73■□□□□ 0.43
GABPB1-210ENST00000560825 MAST1Q9Y2H9 1570 aa17.72■□□□□ 0.43
GABPB1-210ENST00000560825 ZNF142P52746 1687 aaPredicted RBP17.72■□□□□ 0.43
GABPB1-210ENST00000560825 PTPRKQ15262 1439 aa17.72■□□□□ 0.43
GABPB1-210ENST00000560825 PTPN23Q9H3S7 1636 aa17.71■□□□□ 0.43
GABPB1-210ENST00000560825 ESF1Q9H501 851 aaKnown RBP17.71■□□□□ 0.43
GABPB1-210ENST00000560825 MROH1Q8NDA8 1641 aa17.7■□□□□ 0.42
GABPB1-210ENST00000560825 CAMSAP1Q5T5Y3 1602 aa17.69■□□□□ 0.42
GABPB1-210ENST00000560825 RNF17Q9BXT8 1623 aaKnown RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms