RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 PLPPR3Q6T4P5 718 aa16.51■□□□□ 0.23
LDLR-214ENST00000560628 MYT1LQ9UL68 1186 aa16.51■□□□□ 0.23
LDLR-214ENST00000560628 POGZQ7Z3K3 1410 aa16.51■□□□□ 0.23
LDLR-214ENST00000560628 ADAMTSL3P82987 1691 aa16.5■□□□□ 0.23
LDLR-214ENST00000560628 ARHGAP5Q13017 1502 aa16.5■□□□□ 0.23
LDLR-214ENST00000560628 ZFYVE16Q7Z3T8 1539 aa16.5■□□□□ 0.23
LDLR-214ENST00000560628 ARHGEF40Q8TER5 1519 aa16.5■□□□□ 0.23
LDLR-214ENST00000560628 CCDC18Q5T9S5 1454 aa16.49■□□□□ 0.23
LDLR-214ENST00000560628 MAGI2Q86UL8 1455 aa16.48■□□□□ 0.23
LDLR-214ENST00000560628 MYO5CQ9NQX4 1742 aa16.48■□□□□ 0.23
LDLR-214ENST00000560628 ZMYM4Q5VZL5 1548 aa16.48■□□□□ 0.23
LDLR-214ENST00000560628 BCORL1Q5H9F3 1711 aa16.48■□□□□ 0.23
LDLR-214ENST00000560628 ZNF777Q9ULD5 760 aaPredicted RBP16.46■□□□□ 0.23
LDLR-214ENST00000560628 FYCO1Q9BQS8 1478 aa16.46■□□□□ 0.23
LDLR-214ENST00000560628 MADDQ8WXG6 1647 aa16.45■□□□□ 0.22
LDLR-214ENST00000560628 ATP10AO60312 1499 aa16.44■□□□□ 0.22
LDLR-214ENST00000560628 LOC105371045A0A1W2PR82 267 aa16.43■□□□□ 0.22
LDLR-214ENST00000560628 SIGLEC1Q9BZZ2 1709 aa16.42■□□□□ 0.22
LDLR-214ENST00000560628 ZNF518AQ6AHZ1 1483 aa16.42■□□□□ 0.22
LDLR-214ENST00000560628 TRAPPC8Q9Y2L5 1435 aa16.41■□□□□ 0.22
LDLR-214ENST00000560628 CDC42BPBQ9Y5S2 1711 aa16.4■□□□□ 0.22
LDLR-214ENST00000560628 C9orf84Q5VXU9 1444 aa16.4■□□□□ 0.22
LDLR-214ENST00000560628 RIMS1Q86UR5 1692 aaKnown RBP16.4■□□□□ 0.22
LDLR-214ENST00000560628 ARHGEF12Q9NZN5 1544 aa16.4■□□□□ 0.22
LDLR-214ENST00000560628 HNRNPMP52272 730 aaKnown RBP eCLIP16.39■□□□□ 0.21
LDLR-214ENST00000560628 MTUS2Q5JR59 1369 aa16.38■□□□□ 0.21
LDLR-214ENST00000560628 CEP162Q5TB80 1403 aa16.38■□□□□ 0.21
LDLR-214ENST00000560628 ILDR1Q86SU0 546 aaPredicted RBP16.38■□□□□ 0.21
LDLR-214ENST00000560628 CFDP1Q9UEE9 299 aaPredicted RBP16.38■□□□□ 0.21
LDLR-214ENST00000560628 PREX2Q70Z35 1606 aa16.37■□□□□ 0.21
LDLR-214ENST00000560628 GPATCH8Q9UKJ3 1502 aaKnown RBP16.36■□□□□ 0.21
LDLR-214ENST00000560628 CEBPAP49715 358 aaPredicted RBP16.36■□□□□ 0.21
LDLR-214ENST00000560628 HSPA2P54652 639 aa16.36■□□□□ 0.21
LDLR-214ENST00000560628 CCNB3Q8WWL7 1395 aa16.36■□□□□ 0.21
LDLR-214ENST00000560628 KDM5CP41229 1560 aa16.35■□□□□ 0.21
LDLR-214ENST00000560628 ABCC1P33527 1531 aa16.35■□□□□ 0.21
LDLR-214ENST00000560628 MLH3Q9UHC1 1453 aa16.34■□□□□ 0.21
LDLR-214ENST00000560628 CDC42BPAQ5VT25 1732 aa16.33■□□□□ 0.21
LDLR-214ENST00000560628 SPAG9O60271 1321 aaKnown RBP16.32■□□□□ 0.2
LDLR-214ENST00000560628 LMTK3Q96Q04 1460 aa16.32■□□□□ 0.2
LDLR-214ENST00000560628 ZNF644Q9H582 1327 aaPredicted RBP16.31■□□□□ 0.2
LDLR-214ENST00000560628 DIP2CQ9Y2E4 1556 aa16.3■□□□□ 0.2
LDLR-214ENST00000560628 SAMD9LQ8IVG5 1584 aa16.3■□□□□ 0.2
LDLR-214ENST00000560628 ESF1Q9H501 851 aaKnown RBP16.29■□□□□ 0.2
LDLR-214ENST00000560628 ITSN2Q9NZM3 1697 aa16.29■□□□□ 0.2
LDLR-214ENST00000560628 FER1L4A9Z1Z3 1794 aa16.28■□□□□ 0.2
LDLR-214ENST00000560628 ABCA6Q8N139 1617 aa16.28■□□□□ 0.2
LDLR-214ENST00000560628 SYCP2Q9BX26 1530 aa16.28■□□□□ 0.2
LDLR-214ENST00000560628 KIAA1107Q9UPP5 1409 aa16.27■□□□□ 0.19
LDLR-214ENST00000560628 KIDINS220Q9ULH0 1771 aa16.26■□□□□ 0.19
LDLR-214ENST00000560628 PLEKHH2Q8IVE3 1493 aa16.24■□□□□ 0.19
LDLR-214ENST00000560628 REREQ9P2R6 1566 aa16.24■□□□□ 0.19
LDLR-214ENST00000560628 AGLP35573 1532 aa16.23■□□□□ 0.19
LDLR-214ENST00000560628 EHBP1L1Q8N3D4 1523 aa16.23■□□□□ 0.19
LDLR-214ENST00000560628 TIAM1Q13009 1591 aa16.21■□□□□ 0.19
LDLR-214ENST00000560628 GGT6Q6P531 493 aa16.2■□□□□ 0.18
LDLR-214ENST00000560628 VPS8Q8N3P4 1428 aa16.19■□□□□ 0.18
LDLR-214ENST00000560628 NCOA2Q15596 1464 aa16.19■□□□□ 0.18
LDLR-214ENST00000560628 ATP7AQ04656 1500 aa16.19■□□□□ 0.18
LDLR-214ENST00000560628 MBD5Q9P267 1494 aa16.18■□□□□ 0.18
LDLR-214ENST00000560628 KANK4Q5T7N3 995 aaPredicted RBP16.18■□□□□ 0.18
LDLR-214ENST00000560628 A2MP01023 1474 aa16.17■□□□□ 0.18
LDLR-214ENST00000560628 FBXO41Q8TF61 875 aa16.16■□□□□ 0.18
LDLR-214ENST00000560628 UHRF1BP1Q6BDS2 1440 aa16.16■□□□□ 0.18
LDLR-214ENST00000560628 ZMYM3Q14202 1370 aa16.15■□□□□ 0.18
LDLR-214ENST00000560628 SUPT6HQ7KZ85 1726 aaKnown RBP16.15■□□□□ 0.18
LDLR-214ENST00000560628 CNTLNQ9NXG0 1405 aa16.15■□□□□ 0.18
LDLR-214ENST00000560628 INO80Q9ULG1 1556 aaPredicted RBP16.13■□□□□ 0.17
LDLR-214ENST00000560628 SETD1BQ9UPS6 1966 aaKnown RBP16.13■□□□□ 0.17
LDLR-214ENST00000560628 RSPH4AQ5TD94 716 aa16.13■□□□□ 0.17
LDLR-214ENST00000560628 LRRC9Q6ZRR7 1453 aa16.13■□□□□ 0.17
LDLR-214ENST00000560628 C3P01024 1663 aa16.13■□□□□ 0.17
LDLR-214ENST00000560628 PREX1Q8TCU6 1659 aa16.12■□□□□ 0.17
LDLR-214ENST00000560628 RTEL1-TNFRSF6BF6WH68 1400 aa16.11■□□□□ 0.17
LDLR-214ENST00000560628 CAMSAP2Q08AD1 1489 aa16.11■□□□□ 0.17
LDLR-214ENST00000560628 KIF3BO15066 747 aa16.11■□□□□ 0.17
LDLR-214ENST00000560628 TSPY4P0CV99 314 aa16.11■□□□□ 0.17
LDLR-214ENST00000560628 TSPY10P0CW01 314 aa16.11■□□□□ 0.17
LDLR-214ENST00000560628 DHX29Q7Z478 1369 aaKnown RBP16.11■□□□□ 0.17
LDLR-214ENST00000560628 DMRT2Q9Y5R5 561 aa16.1■□□□□ 0.17
LDLR-214ENST00000560628 PLXNC1O60486 1568 aa16.09■□□□□ 0.17
LDLR-214ENST00000560628 APLP2Q06481 763 aa16.09■□□□□ 0.17
LDLR-214ENST00000560628 PPP6R1Q9UPN7 881 aa16.09■□□□□ 0.17
LDLR-214ENST00000560628 CCDC141Q6ZP82 1450 aa16.09■□□□□ 0.17
LDLR-214ENST00000560628 CERKQ8TCT0 537 aa16.08■□□□□ 0.16
LDLR-214ENST00000560628 ADGBQ8N7X0 1667 aa16.05■□□□□ 0.16
LDLR-214ENST00000560628 MAP3K1Q13233 1512 aa16.05■□□□□ 0.16
LDLR-214ENST00000560628 NPATQ14207 1427 aa16.05■□□□□ 0.16
LDLR-214ENST00000560628 CLTCQ00610 1675 aaKnown RBP16.05■□□□□ 0.16
LDLR-214ENST00000560628 STRCQ7RTU9 1775 aa16.04■□□□□ 0.16
LDLR-214ENST00000560628 PTPRKQ15262 1439 aa16.03■□□□□ 0.16
LDLR-214ENST00000560628 FBXO31Q5XUX0 539 aaPredicted RBP16.03■□□□□ 0.16
LDLR-214ENST00000560628 MROH2AA6NES4 1674 aa16.02■□□□□ 0.16
LDLR-214ENST00000560628 NCKAP5LQ9HCH0 1330 aa16.02■□□□□ 0.16
LDLR-214ENST00000560628 WASHC2CQ9Y4E1 1318 aa16.02■□□□□ 0.16
LDLR-214ENST00000560628 MYOM3Q5VTT5 1437 aa16.02■□□□□ 0.15
LDLR-214ENST00000560628 ARHGEF5Q12774 1597 aa16■□□□□ 0.15
LDLR-214ENST00000560628 MIA2Q96PC5 1412 aa16■□□□□ 0.15
LDLR-214ENST00000560628 PTPRTO14522 1441 aa15.99■□□□□ 0.15
LDLR-214ENST00000560628 NCOA1Q15788 1441 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms