RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 EFCAB2Q5VUJ9 269 aa20.45■□□□□ 0.86
NEDD8-208ENST00000560427 CDC42BPAQ5VT25 1732 aa20.43■□□□□ 0.86
NEDD8-208ENST00000560427 CCNB3Q8WWL7 1395 aa20.43■□□□□ 0.86
NEDD8-208ENST00000560427 GPATCH8Q9UKJ3 1502 aaKnown RBP20.43■□□□□ 0.86
NEDD8-208ENST00000560427 ADGRL1O94910 1474 aa20.42■□□□□ 0.86
NEDD8-208ENST00000560427 CDC42BPBQ9Y5S2 1711 aa20.41■□□□□ 0.86
NEDD8-208ENST00000560427 DENND4BO75064 1496 aaPredicted RBP20.41■□□□□ 0.86
NEDD8-208ENST00000560427 NCOA2Q15596 1464 aa20.41■□□□□ 0.86
NEDD8-208ENST00000560427 ITSN2Q9NZM3 1697 aa20.41■□□□□ 0.86
NEDD8-208ENST00000560427 FRMPD1Q5SYB0 1578 aa20.37■□□□□ 0.85
NEDD8-208ENST00000560427 POGZQ7Z3K3 1410 aa20.36■□□□□ 0.85
NEDD8-208ENST00000560427 ABCC1P33527 1531 aa20.36■□□□□ 0.85
NEDD8-208ENST00000560427 SCAPERQ9BY12 1400 aa20.36■□□□□ 0.85
NEDD8-208ENST00000560427 RICTORQ6R327 1708 aa20.35■□□□□ 0.85
NEDD8-208ENST00000560427 PLEKHH2Q8IVE3 1493 aa20.35■□□□□ 0.85
NEDD8-208ENST00000560427 ZMYM4Q5VZL5 1548 aa20.34■□□□□ 0.85
NEDD8-208ENST00000560427 KANK4Q5T7N3 995 aaPredicted RBP20.34■□□□□ 0.85
NEDD8-208ENST00000560427 CFDP1Q9UEE9 299 aaPredicted RBP20.34■□□□□ 0.85
NEDD8-208ENST00000560427 ZNF518AQ6AHZ1 1483 aa20.32■□□□□ 0.84
NEDD8-208ENST00000560427 SAMD9LQ8IVG5 1584 aa20.32■□□□□ 0.84
NEDD8-208ENST00000560427 MAGI2Q86UL8 1455 aa20.31■□□□□ 0.84
NEDD8-208ENST00000560427 KIAA1107Q9UPP5 1409 aa20.31■□□□□ 0.84
NEDD8-208ENST00000560427 RAPGEF3O95398 923 aa20.31■□□□□ 0.84
NEDD8-208ENST00000560427 KDM5CP41229 1560 aa20.29■□□□□ 0.84
NEDD8-208ENST00000560427 MYOM3Q5VTT5 1437 aa20.27■□□□□ 0.84
NEDD8-208ENST00000560427 MIA2Q96PC5 1412 aa20.27■□□□□ 0.84
NEDD8-208ENST00000560427 ARHGEF40Q8TER5 1519 aa20.27■□□□□ 0.83
NEDD8-208ENST00000560427 SYCP2Q9BX26 1530 aa20.27■□□□□ 0.83
NEDD8-208ENST00000560427 ARHGEF12Q9NZN5 1544 aa20.27■□□□□ 0.83
NEDD8-208ENST00000560427 ZNF777Q9ULD5 760 aaPredicted RBP20.25■□□□□ 0.83
NEDD8-208ENST00000560427 ZFYVE16Q7Z3T8 1539 aa20.24■□□□□ 0.83
NEDD8-208ENST00000560427 CAMSAP2Q08AD1 1489 aa20.23■□□□□ 0.83
NEDD8-208ENST00000560427 HECW2Q9P2P5 1572 aa20.22■□□□□ 0.83
NEDD8-208ENST00000560427 TRAPPC8Q9Y2L5 1435 aa20.22■□□□□ 0.83
NEDD8-208ENST00000560427 MLH3Q9UHC1 1453 aa20.22■□□□□ 0.83
NEDD8-208ENST00000560427 MBD5Q9P267 1494 aa20.19■□□□□ 0.82
NEDD8-208ENST00000560427 AFAP1Q8N556 730 aa20.19■□□□□ 0.82
NEDD8-208ENST00000560427 ARHGEF5Q12774 1597 aa20.17■□□□□ 0.82
NEDD8-208ENST00000560427 RSPH4AQ5TD94 716 aa20.17■□□□□ 0.82
NEDD8-208ENST00000560427 FGD6Q6ZV73 1430 aa20.17■□□□□ 0.82
NEDD8-208ENST00000560427 CCDC141Q6ZP82 1450 aa20.17■□□□□ 0.82
NEDD8-208ENST00000560427 ZNF644Q9H582 1327 aaPredicted RBP20.16■□□□□ 0.82
NEDD8-208ENST00000560427 YEATS2Q9ULM3 1422 aa20.16■□□□□ 0.82
NEDD8-208ENST00000560427 HNRNPMP52272 730 aaKnown RBP eCLIP20.15■□□□□ 0.82
NEDD8-208ENST00000560427 INO80Q9ULG1 1556 aaPredicted RBP20.14■□□□□ 0.81
NEDD8-208ENST00000560427 TCOF1Q13428 1488 aaKnown RBP20.14■□□□□ 0.81
NEDD8-208ENST00000560427 PTPN23Q9H3S7 1636 aa20.13■□□□□ 0.81
NEDD8-208ENST00000560427 REREQ9P2R6 1566 aa20.13■□□□□ 0.81
NEDD8-208ENST00000560427 ATP10AO60312 1499 aa20.13■□□□□ 0.81
NEDD8-208ENST00000560427 C9orf84Q5VXU9 1444 aa20.13■□□□□ 0.81
NEDD8-208ENST00000560427 DIP2CQ9Y2E4 1556 aa20.12■□□□□ 0.81
NEDD8-208ENST00000560427 ATP7AQ04656 1500 aa20.12■□□□□ 0.81
NEDD8-208ENST00000560427 RTEL1-TNFRSF6BF6WH68 1400 aa20.12■□□□□ 0.81
NEDD8-208ENST00000560427 SPAG9O60271 1321 aaKnown RBP20.12■□□□□ 0.81
NEDD8-208ENST00000560427 KIDINS220Q9ULH0 1771 aa20.11■□□□□ 0.81
NEDD8-208ENST00000560427 ABCA6Q8N139 1617 aa20.1■□□□□ 0.81
NEDD8-208ENST00000560427 MYT1LQ9UL68 1186 aa20.09■□□□□ 0.81
NEDD8-208ENST00000560427 MAST1Q9Y2H9 1570 aa20.07■□□□□ 0.8
NEDD8-208ENST00000560427 SHANK2Q9UPX8 1470 aa20.05■□□□□ 0.8
NEDD8-208ENST00000560427 AGLP35573 1532 aa20.05■□□□□ 0.8
NEDD8-208ENST00000560427 TSPY4P0CV99 314 aa20.04■□□□□ 0.8
NEDD8-208ENST00000560427 TSPY10P0CW01 314 aa20.04■□□□□ 0.8
NEDD8-208ENST00000560427 DNMT1P26358 1616 aaKnown RBP20.04■□□□□ 0.8
NEDD8-208ENST00000560427 ADGBQ8N7X0 1667 aa20.03■□□□□ 0.8
NEDD8-208ENST00000560427 BCORL1Q5H9F3 1711 aa20.02■□□□□ 0.8
NEDD8-208ENST00000560427 PLXNC1O60486 1568 aa20.02■□□□□ 0.8
NEDD8-208ENST00000560427 ARID4BQ4LE39 1312 aaPredicted RBP20.02■□□□□ 0.79
NEDD8-208ENST00000560427 CROCC2H7BZ55 1655 aa20.01■□□□□ 0.79
NEDD8-208ENST00000560427 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.01■□□□□ 0.79
NEDD8-208ENST00000560427 SIGLEC1Q9BZZ2 1709 aa20.01■□□□□ 0.79
NEDD8-208ENST00000560427 ABCC5O15440 1437 aa20.01■□□□□ 0.79
NEDD8-208ENST00000560427 DAPK1P53355 1430 aa20.01■□□□□ 0.79
NEDD8-208ENST00000560427 A2MP01023 1474 aa20■□□□□ 0.79
NEDD8-208ENST00000560427 KDM4FA0A1W2PPD8 638 aa19.99■□□□□ 0.79
NEDD8-208ENST00000560427 ADAMTSL3P82987 1691 aa19.99■□□□□ 0.79
NEDD8-208ENST00000560427 RRBP1Q9P2E9 1410 aaKnown RBP19.96■□□□□ 0.79
NEDD8-208ENST00000560427 PPARGC1BQ86YN6 1023 aaKnown RBP19.96■□□□□ 0.79
NEDD8-208ENST00000560427 FAM50AQ14320 339 aaKnown RBP19.95■□□□□ 0.78
NEDD8-208ENST00000560427 DHX29Q7Z478 1369 aaKnown RBP19.95■□□□□ 0.78
NEDD8-208ENST00000560427 ADGRL2O95490 1459 aa19.92■□□□□ 0.78
NEDD8-208ENST00000560427 MADDQ8WXG6 1647 aa19.91■□□□□ 0.78
NEDD8-208ENST00000560427 DUOX2Q9NRD8 1548 aa19.91■□□□□ 0.78
NEDD8-208ENST00000560427 ANKRD30AQ9BXX3 1397 aa19.9■□□□□ 0.78
NEDD8-208ENST00000560427 EIF2AK4Q9P2K8 1649 aaKnown RBP19.89■□□□□ 0.77
NEDD8-208ENST00000560427 FER1L4A9Z1Z3 1794 aa19.88■□□□□ 0.77
NEDD8-208ENST00000560427 KIF15Q9NS87 1388 aa19.88■□□□□ 0.77
NEDD8-208ENST00000560427 FAM135AQ9P2D6 1515 aa19.87■□□□□ 0.77
NEDD8-208ENST00000560427 ERBINQ96RT1 1412 aa19.87■□□□□ 0.77
NEDD8-208ENST00000560427 AEBP2Q6ZN18 517 aaPredicted RBP19.87■□□□□ 0.77
NEDD8-208ENST00000560427 NCOA1Q15788 1441 aa19.86■□□□□ 0.77
NEDD8-208ENST00000560427 PTPRMP28827 1452 aa19.86■□□□□ 0.77
NEDD8-208ENST00000560427 CNTLNQ9NXG0 1405 aa19.85■□□□□ 0.77
NEDD8-208ENST00000560427 ROCK1Q13464 1354 aa19.85■□□□□ 0.77
NEDD8-208ENST00000560427 MLECQ14165 292 aa19.85■□□□□ 0.77
NEDD8-208ENST00000560427 PPP6R1Q9UPN7 881 aa19.85■□□□□ 0.77
NEDD8-208ENST00000560427 RIMS1Q86UR5 1692 aaKnown RBP19.84■□□□□ 0.77
NEDD8-208ENST00000560427 RNF17Q9BXT8 1623 aaKnown RBP19.82■□□□□ 0.76
NEDD8-208ENST00000560427 PTPRKQ15262 1439 aa19.81■□□□□ 0.76
NEDD8-208ENST00000560427 KIF3BO15066 747 aa19.8■□□□□ 0.76
NEDD8-208ENST00000560427 ESF1Q9H501 851 aaKnown RBP19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms