RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 ZNF316A6NFI3 1004 aaPredicted RBP16.21■□□□□ 0.19
SPG11-213ENST00000558988 KHSRPQ92945 711 aaKnown RBP eCLIP16.2■□□□□ 0.18
SPG11-213ENST00000558988 ABCC9O60706 1549 aa16.15■□□□□ 0.18
SPG11-213ENST00000558988 CCDC180Q9P1Z9 1646 aa16.1■□□□□ 0.17
SPG11-213ENST00000558988 HCSTQ9UBK5 93 aa16.09■□□□□ 0.17
SPG11-213ENST00000558988 SPOCK2Q92563 424 aa16.08■□□□□ 0.16
SPG11-213ENST00000558988 MS4A4AQ96JQ5 239 aa16.07■□□□□ 0.16
SPG11-213ENST00000558988 POTEEQ6S8J3 1075 aa16.03■□□□□ 0.16
SPG11-213ENST00000558988 AXIN2Q9Y2T1 843 aa16.03■□□□□ 0.16
SPG11-213ENST00000558988 PBX2P40425 430 aa16.02■□□□□ 0.16
SPG11-213ENST00000558988 SOX12O15370 315 aa16■□□□□ 0.15
SPG11-213ENST00000558988 IFNLR1Q8IU57 520 aaPredicted RBP15.98■□□□□ 0.15
SPG11-213ENST00000558988 PHF8Q9UPP1 1060 aa15.98■□□□□ 0.15
SPG11-213ENST00000558988 NUDT7P0C024 238 aa15.96■□□□□ 0.15
SPG11-213ENST00000558988 LHX6Q9UPM6 363 aa15.92■□□□□ 0.14
SPG11-213ENST00000558988 ADGRD1Q6QNK2 874 aa15.88■□□□□ 0.13
SPG11-213ENST00000558988 TRIM41Q8WV44 630 aa15.84■□□□□ 0.13
SPG11-213ENST00000558988 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.81■□□□□ 0.12
SPG11-213ENST00000558988 ZFP91Q96JP5 570 aaPredicted RBP15.81■□□□□ 0.12
SPG11-213ENST00000558988 PCDHGA4Q9Y5G9 962 aa15.79■□□□□ 0.12
SPG11-213ENST00000558988 ARHGAP33O14559 1287 aa15.78■□□□□ 0.12
SPG11-213ENST00000558988 KIF3CO14782 793 aa15.78■□□□□ 0.12
SPG11-213ENST00000558988 C2orf72A6NCS6 295 aa15.77■□□□□ 0.12
SPG11-213ENST00000558988 RIOK3O14730 519 aaKnown RBP15.76■□□□□ 0.11
SPG11-213ENST00000558988 HRO43593 1189 aa15.73■□□□□ 0.11
SPG11-213ENST00000558988 RNF25Q96BH1 459 aaPredicted RBP15.73■□□□□ 0.11
SPG11-213ENST00000558988 NLRP6P59044 892 aa15.72■□□□□ 0.11
SPG11-213ENST00000558988 KCTD12Q96CX2 325 aaKnown RBP15.72■□□□□ 0.11
SPG11-213ENST00000558988 SLC34A2O95436 690 aa15.71■□□□□ 0.11
SPG11-213ENST00000558988 FBXO22Q8NEZ5 403 aa15.71■□□□□ 0.11
SPG11-213ENST00000558988 TK2O00142 265 aa15.69■□□□□ 0.1
SPG11-213ENST00000558988 DMRTA1Q5VZB9 504 aa15.69■□□□□ 0.1
SPG11-213ENST00000558988 IRX2Q9BZI1 471 aaPredicted RBP15.69■□□□□ 0.1
SPG11-213ENST00000558988 VGFO15240 615 aaPredicted RBP15.68■□□□□ 0.1
SPG11-213ENST00000558988 PSEN2P49810 448 aa15.65■□□□□ 0.1
SPG11-213ENST00000558988 RGS20O76081 388 aa15.63■□□□□ 0.09
SPG11-213ENST00000558988 PSDA5PKW4 1024 aaPredicted RBP15.61■□□□□ 0.09
SPG11-213ENST00000558988 STAC3Q96MF2 364 aa15.57■□□□□ 0.08
SPG11-213ENST00000558988 PTPN5P54829 565 aa15.55■□□□□ 0.08
SPG11-213ENST00000558988 MFRPQ9BY79 579 aa15.55■□□□□ 0.08
SPG11-213ENST00000558988 KDM4FA0A1W2PPD8 638 aa15.54■□□□□ 0.08
SPG11-213ENST00000558988 IFFO2Q5TF58 517 aa15.52■□□□□ 0.08
SPG11-213ENST00000558988 TMC2Q8TDI7 906 aa15.52■□□□□ 0.08
SPG11-213ENST00000558988 BCL11BQ9C0K0 894 aaPredicted RBP15.52■□□□□ 0.08
SPG11-213ENST00000558988 A0A0G2JS52 829 aa15.47■□□□□ 0.07
SPG11-213ENST00000558988 STK24Q9Y6E0 443 aa15.45■□□□□ 0.06
SPG11-213ENST00000558988 PPP4R3BQ5MIZ7 849 aa15.44■□□□□ 0.06
SPG11-213ENST00000558988 KCNK17Q96T54 332 aa15.42■□□□□ 0.06
SPG11-213ENST00000558988 PTCD2Q8WV60 388 aaKnown RBP15.41■□□□□ 0.06
SPG11-213ENST00000558988 VPS9D1Q9Y2B5 631 aa15.4■□□□□ 0.06
SPG11-213ENST00000558988 DCAF8L2P0C7V8 631 aa15.35■□□□□ 0.05
SPG11-213ENST00000558988 THSD4Q6ZMP0 1018 aa15.34■□□□□ 0.05
SPG11-213ENST00000558988 KCNH8Q96L42 1107 aa15.33■□□□□ 0.04
SPG11-213ENST00000558988 RB1CC1Q8TDY2 1594 aa15.32■□□□□ 0.04
SPG11-213ENST00000558988 Q6ZNB5 142 aa15.31■□□□□ 0.04
SPG11-213ENST00000558988 TAOK2Q9UL54 1235 aa15.31■□□□□ 0.04
SPG11-213ENST00000558988 STK25O00506 426 aa15.28■□□□□ 0.04
SPG11-213ENST00000558988 PPP1R37O75864 691 aa15.24■□□□□ 0.03
SPG11-213ENST00000558988 BHMG1C9JSJ3 638 aaPredicted RBP15.23■□□□□ 0.03
SPG11-213ENST00000558988 PLPP6Q8IY26 295 aa15.23■□□□□ 0.03
SPG11-213ENST00000558988 WNT2BQ93097 391 aa15.23■□□□□ 0.03
SPG11-213ENST00000558988 GOLGA8CPA6NN73 597 aa15.22■□□□□ 0.03
SPG11-213ENST00000558988 SLC4A5Q9BY07 1137 aa15.22■□□□□ 0.03
SPG11-213ENST00000558988 TBC1D12O60347 775 aa15.21■□□□□ 0.03
SPG11-213ENST00000558988 NACADO15069 1562 aa15.2■□□□□ 0.02
SPG11-213ENST00000558988 FOXK1P85037 733 aa15.2■□□□□ 0.02
SPG11-213ENST00000558988 MRPL50Q8N5N7 158 aaKnown RBP15.15■□□□□ 0.02
SPG11-213ENST00000558988 BCL2L12Q9HB09 334 aa15.14■□□□□ 0.01
SPG11-213ENST00000558988 ZNF454Q8N9F8 522 aa15.13■□□□□ 0.01
SPG11-213ENST00000558988 DSG2Q14126 1118 aa15.11■□□□□ 0.01
SPG11-213ENST00000558988 ZBED2Q9BTP6 218 aa15.11■□□□□ 0.01
SPG11-213ENST00000558988 GPHNQ9NQX3 736 aaPredicted RBP15.1■□□□□ 0.01
SPG11-213ENST00000558988 LCE2BO14633 110 aa15.07■□□□□ 0
SPG11-213ENST00000558988 ITGBL1O95965 494 aaPredicted RBP15.07■□□□□ 0
SPG11-213ENST00000558988 PTPREP23469 700 aa15.06■□□□□ 0
SPG11-213ENST00000558988 OXER1Q8TDS5 423 aa15.01□□□□□ -0.01
SPG11-213ENST00000558988 NBPF3Q9H094 633 aa15.01□□□□□ -0.01
SPG11-213ENST00000558988 UPF1Q92900 1129 aaKnown RBP eCLIP15□□□□□ -0.01
SPG11-213ENST00000558988 FOSBP53539 338 aa14.99□□□□□ -0.01
SPG11-213ENST00000558988 UNC13AQ9UPW8 1703 aa14.99□□□□□ -0.01
SPG11-213ENST00000558988 TRAF7Q6Q0C0 670 aa14.97□□□□□ -0.01
SPG11-213ENST00000558988 LAPTM4AQ15012 233 aa14.96□□□□□ -0.01
SPG11-213ENST00000558988 MYO15BQ96JP2 1530 aa14.94□□□□□ -0.02
SPG11-213ENST00000558988 ZCCHC6Q5VYS8 1495 aaKnown RBP14.94□□□□□ -0.02
SPG11-213ENST00000558988 ECM2O94769 699 aaPredicted RBP14.92□□□□□ -0.02
SPG11-213ENST00000558988 ANKK1Q8NFD2 765 aa14.92□□□□□ -0.02
SPG11-213ENST00000558988 GFRA3O60609 400 aa14.91□□□□□ -0.02
SPG11-213ENST00000558988 BCAMP50895 628 aa14.9□□□□□ -0.02
SPG11-213ENST00000558988 ADAM33Q9BZ11 813 aa14.9□□□□□ -0.02
SPG11-213ENST00000558988 KCNC4Q03721 635 aa14.88□□□□□ -0.03
SPG11-213ENST00000558988 RGL2O15211 777 aa14.86□□□□□ -0.03
SPG11-213ENST00000558988 ZDHHC16Q969W1 377 aa14.86□□□□□ -0.03
SPG11-213ENST00000558988 JPH4Q96JJ6 628 aa14.86□□□□□ -0.03
SPG11-213ENST00000558988 BICRAQ9NZM4 1560 aa14.85□□□□□ -0.03
SPG11-213ENST00000558988 ANO8Q9HCE9 1232 aaPredicted RBP14.83□□□□□ -0.04
SPG11-213ENST00000558988 RABGEF1Q9UJ41 708 aa14.83□□□□□ -0.04
SPG11-213ENST00000558988 SOWAHBA6NEL2 793 aa14.82□□□□□ -0.04
SPG11-213ENST00000558988 PROX2Q3B8N5 592 aa14.81□□□□□ -0.04
SPG11-213ENST00000558988 SCRIBQ14160 1630 aa14.81□□□□□ -0.04
SPG11-213ENST00000558988 NYAP1Q6ZVC0 841 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms