RNA–Protein interactions for RNA: ENST00000558894.5

SMAD3-209, Transcript of SMAD family member 3, humanhuman

TSL 5

Gene SMAD3, Length 797 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-209ENST00000558894 DENND4BO75064 1496 aaPredicted RBP9.19□□□□□ -0.94
SMAD3-209ENST00000558894 CDC42BPAQ5VT25 1732 aa9.19□□□□□ -0.94
SMAD3-209ENST00000558894 CASKIN1Q8WXD9 1431 aa9.18□□□□□ -0.94
SMAD3-209ENST00000558894 PREX2Q70Z35 1606 aa9.17□□□□□ -0.94
SMAD3-209ENST00000558894 TROQ12816 1431 aaPredicted RBP9.17□□□□□ -0.94
SMAD3-209ENST00000558894 RIMS1Q86UR5 1692 aaKnown RBP9.16□□□□□ -0.94
SMAD3-209ENST00000558894 PTPRMP28827 1452 aa9.16□□□□□ -0.94
SMAD3-209ENST00000558894 POGZQ7Z3K3 1410 aa9.16□□□□□ -0.94
SMAD3-209ENST00000558894 YEATS2Q9ULM3 1422 aa9.16□□□□□ -0.94
SMAD3-209ENST00000558894 KDM5CP41229 1560 aa9.16□□□□□ -0.94
SMAD3-209ENST00000558894 ZFYVE16Q7Z3T8 1539 aa9.15□□□□□ -0.94
SMAD3-209ENST00000558894 MAGI2Q86UL8 1455 aa9.15□□□□□ -0.94
SMAD3-209ENST00000558894 ITSN2Q9NZM3 1697 aa9.15□□□□□ -0.94
SMAD3-209ENST00000558894 CCDC18Q5T9S5 1454 aa9.15□□□□□ -0.95
SMAD3-209ENST00000558894 SCAPERQ9BY12 1400 aa9.14□□□□□ -0.95
SMAD3-209ENST00000558894 FYCO1Q9BQS8 1478 aa9.14□□□□□ -0.95
SMAD3-209ENST00000558894 DISP3Q9P2K9 1392 aa9.13□□□□□ -0.95
SMAD3-209ENST00000558894 ARHGEF12Q9NZN5 1544 aa9.13□□□□□ -0.95
SMAD3-209ENST00000558894 FER1L4A9Z1Z3 1794 aa9.13□□□□□ -0.95
SMAD3-209ENST00000558894 ABCC1P33527 1531 aa9.12□□□□□ -0.95
SMAD3-209ENST00000558894 ARHGAP5Q13017 1502 aa9.12□□□□□ -0.95
SMAD3-209ENST00000558894 ATP1B4Q9UN42 357 aaPredicted RBP9.12□□□□□ -0.95
SMAD3-209ENST00000558894 CLIP1P30622 1438 aa9.12□□□□□ -0.95
SMAD3-209ENST00000558894 ABCA6Q8N139 1617 aa9.12□□□□□ -0.95
SMAD3-209ENST00000558894 DIP2CQ9Y2E4 1556 aa9.12□□□□□ -0.95
SMAD3-209ENST00000558894 CDK11AQ9UQ88 783 aaPredicted RBP9.11□□□□□ -0.95
SMAD3-209ENST00000558894 KIDINS220Q9ULH0 1771 aa9.11□□□□□ -0.95
SMAD3-209ENST00000558894 SAMD9LQ8IVG5 1584 aa9.11□□□□□ -0.95
SMAD3-209ENST00000558894 REREQ9P2R6 1566 aa9.11□□□□□ -0.95
SMAD3-209ENST00000558894 ATP10AO60312 1499 aa9.1□□□□□ -0.95
SMAD3-209ENST00000558894 EFCAB2Q5VUJ9 269 aa9.1□□□□□ -0.95
SMAD3-209ENST00000558894 ZNF518AQ6AHZ1 1483 aa9.09□□□□□ -0.95
SMAD3-209ENST00000558894 MLH3Q9UHC1 1453 aa9.08□□□□□ -0.96
SMAD3-209ENST00000558894 TRAPPC8Q9Y2L5 1435 aa9.08□□□□□ -0.96
SMAD3-209ENST00000558894 AFAP1Q8N556 730 aa9.08□□□□□ -0.96
SMAD3-209ENST00000558894 GPATCH8Q9UKJ3 1502 aaKnown RBP9.08□□□□□ -0.96
SMAD3-209ENST00000558894 C9orf84Q5VXU9 1444 aa9.07□□□□□ -0.96
SMAD3-209ENST00000558894 ARID4BQ4LE39 1312 aaPredicted RBP9.06□□□□□ -0.96
SMAD3-209ENST00000558894 C3P01024 1663 aa9.06□□□□□ -0.96
SMAD3-209ENST00000558894 PREX1Q8TCU6 1659 aa9.05□□□□□ -0.96
SMAD3-209ENST00000558894 TIAM1Q13009 1591 aa9.05□□□□□ -0.96
SMAD3-209ENST00000558894 INO80Q9ULG1 1556 aaPredicted RBP9.05□□□□□ -0.96
SMAD3-209ENST00000558894 AGLP35573 1532 aa9.05□□□□□ -0.96
SMAD3-209ENST00000558894 SYCP2Q9BX26 1530 aa9.05□□□□□ -0.96
SMAD3-209ENST00000558894 CEP162Q5TB80 1403 aa9.04□□□□□ -0.96
SMAD3-209ENST00000558894 PLXNC1O60486 1568 aa9.03□□□□□ -0.96
SMAD3-209ENST00000558894 STRCQ7RTU9 1775 aa9.02□□□□□ -0.97
SMAD3-209ENST00000558894 EHBP1L1Q8N3D4 1523 aa9.02□□□□□ -0.97
SMAD3-209ENST00000558894 SUPT6HQ7KZ85 1726 aaKnown RBP9.02□□□□□ -0.97
SMAD3-209ENST00000558894 MLECQ14165 292 aa9.01□□□□□ -0.97
SMAD3-209ENST00000558894 KIAA1107Q9UPP5 1409 aa9.01□□□□□ -0.97
SMAD3-209ENST00000558894 MROH2AA6NES4 1674 aa9□□□□□ -0.97
SMAD3-209ENST00000558894 ADGBQ8N7X0 1667 aa9□□□□□ -0.97
SMAD3-209ENST00000558894 ATP7AQ04656 1500 aa9□□□□□ -0.97
SMAD3-209ENST00000558894 SETD1BQ9UPS6 1966 aaKnown RBP9□□□□□ -0.97
SMAD3-209ENST00000558894 MBD5Q9P267 1494 aa9□□□□□ -0.97
SMAD3-209ENST00000558894 CLTCQ00610 1675 aaKnown RBP8.98□□□□□ -0.97
SMAD3-209ENST00000558894 PLEKHH2Q8IVE3 1493 aa8.98□□□□□ -0.97
SMAD3-209ENST00000558894 CEBPAP49715 358 aaPredicted RBP8.98□□□□□ -0.97
SMAD3-209ENST00000558894 HNRNPMP52272 730 aaKnown RBP eCLIP8.98□□□□□ -0.972e-6■■■□□ 18
SMAD3-209ENST00000558894 HSPA2P54652 639 aa8.98□□□□□ -0.97
SMAD3-209ENST00000558894 ZNF644Q9H582 1327 aaPredicted RBP8.98□□□□□ -0.97
SMAD3-209ENST00000558894 NCOA2Q15596 1464 aa8.97□□□□□ -0.97
SMAD3-209ENST00000558894 LOC105371045A0A1W2PR82 267 aa8.97□□□□□ -0.97
SMAD3-209ENST00000558894 MTUS2Q5JR59 1369 aa8.97□□□□□ -0.97
SMAD3-209ENST00000558894 CCNB3Q8WWL7 1395 aa8.97□□□□□ -0.97
SMAD3-209ENST00000558894 CFDP1Q9UEE9 299 aaPredicted RBP8.96□□□□□ -0.98
SMAD3-209ENST00000558894 ZNF777Q9ULD5 760 aaPredicted RBP8.96□□□□□ -0.98
SMAD3-209ENST00000558894 PLPPR3Q6T4P5 718 aa8.95□□□□□ -0.98
SMAD3-209ENST00000558894 VPS8Q8N3P4 1428 aa8.95□□□□□ -0.98
SMAD3-209ENST00000558894 A2MP01023 1474 aa8.95□□□□□ -0.98
SMAD3-209ENST00000558894 SPAG9O60271 1321 aaKnown RBP8.94□□□□□ -0.98
SMAD3-209ENST00000558894 CAMSAP2Q08AD1 1489 aa8.94□□□□□ -0.98
SMAD3-209ENST00000558894 LRRC9Q6ZRR7 1453 aa8.94□□□□□ -0.98
SMAD3-209ENST00000558894 MAP3K1Q13233 1512 aa8.94□□□□□ -0.98
SMAD3-209ENST00000558894 ARHGEF5Q12774 1597 aa8.94□□□□□ -0.98
SMAD3-209ENST00000558894 RTEL1-TNFRSF6BF6WH68 1400 aa8.93□□□□□ -0.98
SMAD3-209ENST00000558894 ZNF142P52746 1687 aaPredicted RBP8.93□□□□□ -0.98
SMAD3-209ENST00000558894 MYO3AQ8NEV4 1616 aa8.92□□□□□ -0.98
SMAD3-209ENST00000558894 CNTLNQ9NXG0 1405 aa8.92□□□□□ -0.98
SMAD3-209ENST00000558894 MYT1LQ9UL68 1186 aa8.92□□□□□ -0.98
SMAD3-209ENST00000558894 MAST1Q9Y2H9 1570 aa8.91□□□□□ -0.98
SMAD3-209ENST00000558894 CCDC141Q6ZP82 1450 aa8.9□□□□□ -0.98
SMAD3-209ENST00000558894 NPATQ14207 1427 aa8.9□□□□□ -0.98
SMAD3-209ENST00000558894 UHRF1BP1Q6BDS2 1440 aa8.9□□□□□ -0.98
SMAD3-209ENST00000558894 ZMYM3Q14202 1370 aa8.9□□□□□ -0.98
SMAD3-209ENST00000558894 KANK4Q5T7N3 995 aaPredicted RBP8.9□□□□□ -0.98
SMAD3-209ENST00000558894 PTPRKQ15262 1439 aa8.89□□□□□ -0.99
SMAD3-209ENST00000558894 CROCC2H7BZ55 1655 aa8.89□□□□□ -0.99
SMAD3-209ENST00000558894 DHX29Q7Z478 1369 aaKnown RBP8.88□□□□□ -0.99
SMAD3-209ENST00000558894 RNF17Q9BXT8 1623 aaKnown RBP8.88□□□□□ -0.99
SMAD3-209ENST00000558894 NCOA1Q15788 1441 aa8.88□□□□□ -0.99
SMAD3-209ENST00000558894 CAMSAP1Q5T5Y3 1602 aa8.87□□□□□ -0.99
SMAD3-209ENST00000558894 LTBP4Q8N2S1 1624 aa8.87□□□□□ -0.99
SMAD3-209ENST00000558894 MROH1Q8NDA8 1641 aa8.87□□□□□ -0.99
SMAD3-209ENST00000558894 CEP170BQ9Y4F5 1589 aaPredicted RBP8.87□□□□□ -0.99
SMAD3-209ENST00000558894 EIF2AK4Q9P2K8 1649 aaKnown RBP8.87□□□□□ -0.99
SMAD3-209ENST00000558894 FAM135AQ9P2D6 1515 aa8.86□□□□□ -0.99
SMAD3-209ENST00000558894 DNMT1P26358 1616 aaKnown RBP8.86□□□□□ -0.99
SMAD3-209ENST00000558894 PTPRTO14522 1441 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms