RNA–Protein interactions for RNA: ENST00000558894.5

SMAD3-209, Transcript of SMAD family member 3, humanhuman

TSL 5

Gene SMAD3, Length 797 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-209ENST00000558894 NISCHQ9Y2I1 1504 aa14.09□□□□□ -0.15
SMAD3-209ENST00000558894 CCDC180Q9P1Z9 1646 aa12.66□□□□□ -0.38
SMAD3-209ENST00000558894 ABCC9O60706 1549 aa12.5□□□□□ -0.41
SMAD3-209ENST00000558894 RB1CC1Q8TDY2 1594 aa11.95□□□□□ -0.5
SMAD3-209ENST00000558894 DNAJC5BQ9UF47 199 aa11.92□□□□□ -0.5
SMAD3-209ENST00000558894 NACADO15069 1562 aa11.89□□□□□ -0.51
SMAD3-209ENST00000558894 UNC13AQ9UPW8 1703 aa11.83□□□□□ -0.52
SMAD3-209ENST00000558894 MYO15BQ96JP2 1530 aa11.78□□□□□ -0.52
SMAD3-209ENST00000558894 ZCCHC6Q5VYS8 1495 aaKnown RBP11.7□□□□□ -0.54
SMAD3-209ENST00000558894 DCAF8L2P0C7V8 631 aa11.69□□□□□ -0.54
SMAD3-209ENST00000558894 BICRAQ9NZM4 1560 aa11.69□□□□□ -0.54
SMAD3-209ENST00000558894 DCAF1Q9Y4B6 1507 aa11.66□□□□□ -0.54
SMAD3-209ENST00000558894 PABPN1Q86U42 306 aaKnown RBP eCLIP11.61□□□□□ -0.55
SMAD3-209ENST00000558894 DNAJC5Q9H3Z4 198 aa11.61□□□□□ -0.55
SMAD3-209ENST00000558894 SCRIBQ14160 1630 aa11.48□□□□□ -0.57
SMAD3-209ENST00000558894 SHROOM4Q9ULL8 1493 aa11.45□□□□□ -0.58
SMAD3-209ENST00000558894 CC2D2AQ9P2K1 1620 aa11.35□□□□□ -0.59
SMAD3-209ENST00000558894 EIF4G1Q04637 1599 aaKnown RBP11.34□□□□□ -0.59
SMAD3-209ENST00000558894 CECR2Q9BXF3 1484 aa11.25□□□□□ -0.61
SMAD3-209ENST00000558894 SMARCA4P51532 1647 aa10.99□□□□□ -0.65
SMAD3-209ENST00000558894 NCAPD3P42695 1498 aa10.98□□□□□ -0.65
SMAD3-209ENST00000558894 ATAD2BQ9ULI0 1458 aa10.95□□□□□ -0.66
SMAD3-209ENST00000558894 HMGXB3Q12766 1538 aa10.92□□□□□ -0.66
SMAD3-209ENST00000558894 PEG3Q9GZU2 1588 aa10.91□□□□□ -0.66
SMAD3-209ENST00000558894 SMARCA2P51531 1590 aa10.9□□□□□ -0.66
SMAD3-209ENST00000558894 BAZ1AQ9NRL2 1556 aaPredicted RBP10.9□□□□□ -0.66
SMAD3-209ENST00000558894 MROH2BQ7Z745 1585 aa10.86□□□□□ -0.67
SMAD3-209ENST00000558894 BAZ1BQ9UIG0 1483 aaKnown RBP10.81□□□□□ -0.68
SMAD3-209ENST00000558894 NESP48681 1621 aa10.8□□□□□ -0.68
SMAD3-209ENST00000558894 WIZO95785 1651 aa10.76□□□□□ -0.69
SMAD3-209ENST00000558894 CUX2O14529 1486 aa10.74□□□□□ -0.69
SMAD3-209ENST00000558894 LAMC3Q9Y6N6 1575 aa10.73□□□□□ -0.69
SMAD3-209ENST00000558894 ERCC6Q03468 1493 aa10.72□□□□□ -0.69
SMAD3-209ENST00000558894 THOC2Q8NI27 1593 aaKnown RBP10.72□□□□□ -0.69
SMAD3-209ENST00000558894 KIF21AQ7Z4S6 1674 aa10.72□□□□□ -0.69
SMAD3-209ENST00000558894 RSF1Q96T23 1441 aaPredicted RBP10.64□□□□□ -0.71
SMAD3-209ENST00000558894 CADPSQ9ULU8 1353 aa10.61□□□□□ -0.71
SMAD3-209ENST00000558894 TRIM41Q8WV44 630 aa10.6□□□□□ -0.71
SMAD3-209ENST00000558894 TOP2AP11388 1531 aaKnown RBP10.59□□□□□ -0.71
SMAD3-209ENST00000558894 PDS5BQ9NTI5 1447 aa10.58□□□□□ -0.72
SMAD3-209ENST00000558894 WDR62O43379 1518 aa10.56□□□□□ -0.72
SMAD3-209ENST00000558894 PRDM2Q13029 1718 aa10.54□□□□□ -0.72
SMAD3-209ENST00000558894 CFTRP13569 1480 aa10.54□□□□□ -0.72
SMAD3-209ENST00000558894 MRC2Q9UBG0 1479 aa10.54□□□□□ -0.72
SMAD3-209ENST00000558894 FANCD2Q9BXW9 1451 aa10.49□□□□□ -0.73
SMAD3-209ENST00000558894 CEP164Q9UPV0 1460 aa10.49□□□□□ -0.73
SMAD3-209ENST00000558894 CCDC88BA6NC98 1476 aa10.46□□□□□ -0.74
SMAD3-209ENST00000558894 URB2Q14146 1524 aaKnown RBP10.45□□□□□ -0.74
SMAD3-209ENST00000558894 AEBP2Q6ZN18 517 aaPredicted RBP10.35□□□□□ -0.75
SMAD3-209ENST00000558894 TOPBP1Q92547 1522 aa10.33□□□□□ -0.76
SMAD3-209ENST00000558894 DNMBPQ6XZF7 1577 aa10.31□□□□□ -0.76
SMAD3-209ENST00000558894 ZNF608Q9ULD9 1512 aaPredicted RBP10.3□□□□□ -0.76
SMAD3-209ENST00000558894 TARBP1Q13395 1621 aaKnown RBP10.29□□□□□ -0.76
SMAD3-209ENST00000558894 IFT140Q96RY7 1462 aa10.29□□□□□ -0.76
SMAD3-209ENST00000558894 EIF4G3O43432 1585 aaKnown RBP10.27□□□□□ -0.76
SMAD3-209ENST00000558894 ABCC8Q09428 1581 aa10.27□□□□□ -0.76
SMAD3-209ENST00000558894 POLA1P09884 1462 aaPredicted RBP10.23□□□□□ -0.77
SMAD3-209ENST00000558894 CHD1O14646 1710 aa10.21□□□□□ -0.77
SMAD3-209ENST00000558894 CUX1P39880 1505 aa10.2□□□□□ -0.78
SMAD3-209ENST00000558894 OSCARQ8IYS5 282 aa10.2□□□□□ -0.78
SMAD3-209ENST00000558894 WDR97A6NE52 1622 aa10.19□□□□□ -0.78
SMAD3-209ENST00000558894 AQRO60306 1485 aaKnown RBP eCLIP10.18□□□□□ -0.785e-7■■■■□ 20.6
SMAD3-209ENST00000558894 RAD54L2Q9Y4B4 1467 aa10.18□□□□□ -0.78
SMAD3-209ENST00000558894 RIMBP3CA6NJZ7 1639 aa10.18□□□□□ -0.78
SMAD3-209ENST00000558894 RIMBP3BA6NNM3 1639 aa10.18□□□□□ -0.78
SMAD3-209ENST00000558894 RIMBP3Q9UFD9 1639 aa10.18□□□□□ -0.78
SMAD3-209ENST00000558894 FGD5Q6ZNL6 1462 aa10.17□□□□□ -0.78
SMAD3-209ENST00000558894 SOGA1O94964 1423 aa10.14□□□□□ -0.79
SMAD3-209ENST00000558894 ILDR1Q86SU0 546 aaPredicted RBP10.13□□□□□ -0.79
SMAD3-209ENST00000558894 TDRD9Q8NDG6 1382 aaKnown RBP10.12□□□□□ -0.79
SMAD3-209ENST00000558894 ARHGEF11O15085 1522 aa10.12□□□□□ -0.79
SMAD3-209ENST00000558894 PBRM1Q86U86 1689 aa10.12□□□□□ -0.79
SMAD3-209ENST00000558894 SUPT5HO00267 1087 aaKnown RBP10.1□□□□□ -0.79
SMAD3-209ENST00000558894 ABCA5Q8WWZ7 1642 aa10.09□□□□□ -0.79
SMAD3-209ENST00000558894 BIVM-ERCC5R4GMW8 1640 aa10.09□□□□□ -0.79
SMAD3-209ENST00000558894 SNAPC4Q5SXM2 1469 aa10.08□□□□□ -0.8
SMAD3-209ENST00000558894 CLASP1Q7Z460 1538 aa10.07□□□□□ -0.8
SMAD3-209ENST00000558894 TOP2BQ02880 1626 aa10.07□□□□□ -0.8
SMAD3-209ENST00000558894 SYNJ1O43426 1573 aa10.06□□□□□ -0.8
SMAD3-209ENST00000558894 ABCA10Q8WWZ4 1543 aa10.06□□□□□ -0.8
SMAD3-209ENST00000558894 MAGI1Q96QZ7 1491 aaPredicted RBP10.05□□□□□ -0.8
SMAD3-209ENST00000558894 GRIN2BQ13224 1484 aa10.04□□□□□ -0.8
SMAD3-209ENST00000558894 SYNJ2O15056 1496 aa10.03□□□□□ -0.8
SMAD3-209ENST00000558894 GAPVD1Q14C86 1478 aa10.03□□□□□ -0.8
SMAD3-209ENST00000558894 ARAP1Q96P48 1450 aa10.03□□□□□ -0.8
SMAD3-209ENST00000558894 FBLN2P98095 1184 aa10□□□□□ -0.81
SMAD3-209ENST00000558894 WRNQ14191 1432 aaPredicted RBP eCLIP9.99□□□□□ -0.81
SMAD3-209ENST00000558894 CHIC1Q5VXU3 224 aa9.99□□□□□ -0.81
SMAD3-209ENST00000558894 ADAMTS12P58397 1594 aa9.98□□□□□ -0.81
SMAD3-209ENST00000558894 CYB5RLQ6IPT4 315 aa9.96□□□□□ -0.82
SMAD3-209ENST00000558894 CHMP7Q8WUX9 453 aaPredicted RBP9.95□□□□□ -0.82
SMAD3-209ENST00000558894 CEP170Q5SW79 1584 aa9.95□□□□□ -0.82
SMAD3-209ENST00000558894 SHROOM2Q13796 1616 aa9.94□□□□□ -0.82
SMAD3-209ENST00000558894 GRIN2AQ12879 1464 aa9.94□□□□□ -0.82
SMAD3-209ENST00000558894 ERCC6L2Q5T890 1561 aa9.93□□□□□ -0.82
SMAD3-209ENST00000558894 ERICH3Q5RHP9 1530 aa9.93□□□□□ -0.82
SMAD3-209ENST00000558894 NUP160Q12769 1436 aa9.92□□□□□ -0.82
SMAD3-209ENST00000558894 FHAD1B1AJZ9 1412 aa9.9□□□□□ -0.83
SMAD3-209ENST00000558894 RUSC2Q8N2Y8 1516 aa9.86□□□□□ -0.83
SMAD3-209ENST00000558894 CUL7Q14999 1698 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms