RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 CDC42BPAQ5VT25 1732 aa20.39■□□□□ 0.86
TPM1-215ENST00000558868 PTPRKQ15262 1439 aa20.39■□□□□ 0.85
TPM1-215ENST00000558868 CAMSAP2Q08AD1 1489 aa20.38■□□□□ 0.85
TPM1-215ENST00000558868 DHX57Q6P158 1386 aaKnown RBP20.38■□□□□ 0.85
TPM1-215ENST00000558868 KDM4FA0A1W2PPD8 638 aa20.38■□□□□ 0.85
TPM1-215ENST00000558868 DNMT1P26358 1616 aaKnown RBP20.38■□□□□ 0.85
TPM1-215ENST00000558868 DAPK1P53355 1430 aa20.36■□□□□ 0.85
TPM1-215ENST00000558868 ACIN1Q9UKV3 1341 aaKnown RBP20.36■□□□□ 0.85
TPM1-215ENST00000558868 ROCK1Q13464 1354 aa20.34■□□□□ 0.85
TPM1-215ENST00000558868 NPM1P06748 294 aaKnown RBP eCLIP20.34■□□□□ 0.85
TPM1-215ENST00000558868 PREX2Q70Z35 1606 aa20.34■□□□□ 0.85
TPM1-215ENST00000558868 ABCC5O15440 1437 aa20.33■□□□□ 0.84
TPM1-215ENST00000558868 NAIPQ13075 1403 aa20.33■□□□□ 0.84
TPM1-215ENST00000558868 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.32■□□□□ 0.84
TPM1-215ENST00000558868 ZNF644Q9H582 1327 aaPredicted RBP20.32■□□□□ 0.84
TPM1-215ENST00000558868 ZNF777Q9ULD5 760 aaPredicted RBP20.32■□□□□ 0.84
TPM1-215ENST00000558868 WDR7Q9Y4E6 1490 aa20.3■□□□□ 0.84
TPM1-215ENST00000558868 GCC2Q8IWJ2 1684 aa20.3■□□□□ 0.84
TPM1-215ENST00000558868 MYO5CQ9NQX4 1742 aa20.3■□□□□ 0.84
TPM1-215ENST00000558868 KCNH8Q96L42 1107 aa20.29■□□□□ 0.84
TPM1-215ENST00000558868 TTC37Q6PGP7 1564 aa20.29■□□□□ 0.84
TPM1-215ENST00000558868 RSPH4AQ5TD94 716 aa20.28■□□□□ 0.84
TPM1-215ENST00000558868 CHIC2Q9UKJ5 165 aa20.28■□□□□ 0.84
TPM1-215ENST00000558868 CDC42BPBQ9Y5S2 1711 aa20.27■□□□□ 0.84
TPM1-215ENST00000558868 PLEKHH2Q8IVE3 1493 aa20.27■□□□□ 0.84
TPM1-215ENST00000558868 KIF13AQ9H1H9 1805 aa20.27■□□□□ 0.84
TPM1-215ENST00000558868 ARHGEF5Q12774 1597 aa20.26■□□□□ 0.83
TPM1-215ENST00000558868 SHANK2Q9UPX8 1470 aa20.26■□□□□ 0.83
TPM1-215ENST00000558868 ARHGAP5Q13017 1502 aa20.26■□□□□ 0.83
TPM1-215ENST00000558868 CROCC2H7BZ55 1655 aa20.26■□□□□ 0.83
TPM1-215ENST00000558868 RRP7BPQ9NSQ0 103 aa20.25■□□□□ 0.83
TPM1-215ENST00000558868 PLCH2O75038 1416 aa20.25■□□□□ 0.83
TPM1-215ENST00000558868 ADGBQ8N7X0 1667 aa20.25■□□□□ 0.83
TPM1-215ENST00000558868 ADGRL2O95490 1459 aa20.24■□□□□ 0.83
TPM1-215ENST00000558868 ARAP3Q8WWN8 1544 aa20.23■□□□□ 0.83
TPM1-215ENST00000558868 ASXL2Q76L83 1435 aa20.23■□□□□ 0.83
TPM1-215ENST00000558868 SAMD9LQ8IVG5 1584 aa20.22■□□□□ 0.83
TPM1-215ENST00000558868 TSPY4P0CV99 314 aa20.22■□□□□ 0.83
TPM1-215ENST00000558868 TSPY10P0CW01 314 aa20.22■□□□□ 0.83
TPM1-215ENST00000558868 EFCAB2Q5VUJ9 269 aa20.22■□□□□ 0.83
TPM1-215ENST00000558868 LMTK3Q96Q04 1460 aa20.22■□□□□ 0.83
TPM1-215ENST00000558868 ANKRD30AQ9BXX3 1397 aa20.21■□□□□ 0.83
TPM1-215ENST00000558868 KIAA1107Q9UPP5 1409 aa20.21■□□□□ 0.83
TPM1-215ENST00000558868 HECW2Q9P2P5 1572 aa20.21■□□□□ 0.83
TPM1-215ENST00000558868 CCDC141Q6ZP82 1450 aa20.19■□□□□ 0.82
TPM1-215ENST00000558868 NCOA1Q15788 1441 aa20.19■□□□□ 0.82
TPM1-215ENST00000558868 MBD5Q9P267 1494 aa20.18■□□□□ 0.82
TPM1-215ENST00000558868 ABCA9Q8IUA7 1624 aa20.18■□□□□ 0.82
TPM1-215ENST00000558868 C9orf84Q5VXU9 1444 aa20.18■□□□□ 0.82
TPM1-215ENST00000558868 HNRNPMP52272 730 aaKnown RBP eCLIP20.16■□□□□ 0.82
TPM1-215ENST00000558868 MAPKBP1O60336 1514 aa20.15■□□□□ 0.82
TPM1-215ENST00000558868 FBXO41Q8TF61 875 aa20.14■□□□□ 0.81
TPM1-215ENST00000558868 SYCP2Q9BX26 1530 aa20.13■□□□□ 0.81
TPM1-215ENST00000558868 MAST1Q9Y2H9 1570 aa20.12■□□□□ 0.81
TPM1-215ENST00000558868 TRIM52Q96A61 297 aa20.11■□□□□ 0.81
TPM1-215ENST00000558868 ABCC1P33527 1531 aa20.09■□□□□ 0.81
TPM1-215ENST00000558868 KDM6BO15054 1643 aa20.09■□□□□ 0.81
TPM1-215ENST00000558868 TIMELESSQ9UNS1 1208 aa20.07■□□□□ 0.8
TPM1-215ENST00000558868 FANCAO15360 1455 aa20.06■□□□□ 0.8
TPM1-215ENST00000558868 ANKRD50Q9ULJ7 1429 aa20.06■□□□□ 0.8
TPM1-215ENST00000558868 KIF15Q9NS87 1388 aa20.06■□□□□ 0.8
TPM1-215ENST00000558868 CFAP74Q9C0B2 1584 aa20.04■□□□□ 0.8
TPM1-215ENST00000558868 ARHGEF12Q9NZN5 1544 aa20.03■□□□□ 0.8
TPM1-215ENST00000558868 SOCS7O14512 581 aa20.03■□□□□ 0.8
TPM1-215ENST00000558868 PLXNC1O60486 1568 aa20.03■□□□□ 0.8
TPM1-215ENST00000558868 ILDR2Q71H61 639 aa20.02■□□□□ 0.8
TPM1-215ENST00000558868 MPHOSPH9Q99550 1183 aa20.02■□□□□ 0.8
TPM1-215ENST00000558868 CD109Q6YHK3 1445 aa20.02■□□□□ 0.79
TPM1-215ENST00000558868 RTEL1-TNFRSF6BF6WH68 1400 aa20■□□□□ 0.79
TPM1-215ENST00000558868 ADGRL1O94910 1474 aa19.99■□□□□ 0.79
TPM1-215ENST00000558868 TRAPPC8Q9Y2L5 1435 aa19.98■□□□□ 0.79
TPM1-215ENST00000558868 SPAG9O60271 1321 aaKnown RBP19.97■□□□□ 0.79
TPM1-215ENST00000558868 DUOX2Q9NRD8 1548 aa19.97■□□□□ 0.79
TPM1-215ENST00000558868 GLI2P10070 1586 aa19.96■□□□□ 0.79
TPM1-215ENST00000558868 SLC4A1APQ9BWU0 796 aaKnown RBP19.96■□□□□ 0.79
TPM1-215ENST00000558868 SCAPERQ9BY12 1400 aa19.95■□□□□ 0.78
TPM1-215ENST00000558868 NEUROD1Q13562 356 aa19.95■□□□□ 0.78
TPM1-215ENST00000558868 SIN3AQ96ST3 1273 aa19.95■□□□□ 0.78
TPM1-215ENST00000558868 KDM5DQ9BY66 1539 aa19.94■□□□□ 0.78
TPM1-215ENST00000558868 ERBINQ96RT1 1412 aa19.93■□□□□ 0.78
TPM1-215ENST00000558868 NEO1Q92859 1461 aa19.93■□□□□ 0.78
TPM1-215ENST00000558868 PZPP20742 1482 aa19.92■□□□□ 0.78
TPM1-215ENST00000558868 DENND4BO75064 1496 aaPredicted RBP19.92■□□□□ 0.78
TPM1-215ENST00000558868 NUP155O75694 1391 aa19.91■□□□□ 0.78
TPM1-215ENST00000558868 TONSLQ96HA7 1378 aa19.91■□□□□ 0.78
TPM1-215ENST00000558868 AFAP1Q8N556 730 aa19.9■□□□□ 0.78
TPM1-215ENST00000558868 ZNF518AQ6AHZ1 1483 aa19.9■□□□□ 0.78
TPM1-215ENST00000558868 ZFYVE16Q7Z3T8 1539 aa19.9■□□□□ 0.78
TPM1-215ENST00000558868 MAP3K4Q9Y6R4 1608 aa19.89■□□□□ 0.77
TPM1-215ENST00000558868 INO80Q9ULG1 1556 aaPredicted RBP19.88■□□□□ 0.77
TPM1-215ENST00000558868 ATP7AQ04656 1500 aa19.88■□□□□ 0.77
TPM1-215ENST00000558868 UNC13BO14795 1591 aa19.87■□□□□ 0.77
TPM1-215ENST00000558868 ZNF316A6NFI3 1004 aaPredicted RBP19.87■□□□□ 0.77
TPM1-215ENST00000558868 ANKRD30BQ9BXX2 1392 aa19.86■□□□□ 0.77
TPM1-215ENST00000558868 DIP2BQ9P265 1576 aa19.84■□□□□ 0.77
TPM1-215ENST00000558868 POGZQ7Z3K3 1410 aa19.84■□□□□ 0.77
TPM1-215ENST00000558868 PKD2Q13563 968 aa19.83■□□□□ 0.77
TPM1-215ENST00000558868 MYT1LQ9UL68 1186 aa19.83■□□□□ 0.77
TPM1-215ENST00000558868 PPP1R15AO75807 674 aaPredicted RBP19.82■□□□□ 0.76
TPM1-215ENST00000558868 FAM69CQ0P6D2 419 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms