RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 AKNAQ7Z591 1439 aa13.69□□□□□ -0.22
USP3-208ENST00000558285 MTUS2Q5JR59 1369 aa13.68□□□□□ -0.22
USP3-208ENST00000558285 APLP2Q06481 763 aa13.67□□□□□ -0.22
USP3-208ENST00000558285 COL17A1Q9UMD9 1497 aaPredicted RBP13.67□□□□□ -0.22
USP3-208ENST00000558285 TTC37Q6PGP7 1564 aa13.66□□□□□ -0.22
USP3-208ENST00000558285 MYO5CQ9NQX4 1742 aa13.66□□□□□ -0.22
USP3-208ENST00000558285 ADGRL1O94910 1474 aa13.65□□□□□ -0.22
USP3-208ENST00000558285 ARHGAP5Q13017 1502 aa13.65□□□□□ -0.22
USP3-208ENST00000558285 POTEHQ6S545 545 aa13.64□□□□□ -0.23
USP3-208ENST00000558285 LOC105371045A0A1W2PR82 267 aa13.64□□□□□ -0.23
USP3-208ENST00000558285 RAPGEF3O95398 923 aa13.63□□□□□ -0.23
USP3-208ENST00000558285 MAGI2Q86UL8 1455 aa13.63□□□□□ -0.23
USP3-208ENST00000558285 VPS8Q8N3P4 1428 aa13.62□□□□□ -0.23
USP3-208ENST00000558285 CCNB3Q8WWL7 1395 aa13.62□□□□□ -0.23
USP3-208ENST00000558285 SCAPERQ9BY12 1400 aa13.62□□□□□ -0.23
USP3-208ENST00000558285 MYT1LQ9UL68 1186 aa13.61□□□□□ -0.23
USP3-208ENST00000558285 EHBP1L1Q8N3D4 1523 aa13.61□□□□□ -0.23
USP3-208ENST00000558285 SCAF1Q9H7N4 1312 aaKnown RBP13.61□□□□□ -0.23
USP3-208ENST00000558285 POGZQ7Z3K3 1410 aa13.6□□□□□ -0.23
USP3-208ENST00000558285 ARID4BQ4LE39 1312 aaPredicted RBP13.6□□□□□ -0.23
USP3-208ENST00000558285 ZNF518AQ6AHZ1 1483 aa13.6□□□□□ -0.23
USP3-208ENST00000558285 PLEKHH2Q8IVE3 1493 aa13.6□□□□□ -0.23
USP3-208ENST00000558285 CFDP1Q9UEE9 299 aaPredicted RBP13.59□□□□□ -0.23
USP3-208ENST00000558285 ZMYM4Q5VZL5 1548 aa13.57□□□□□ -0.24
USP3-208ENST00000558285 LRRIQ1Q96JM4 1722 aa13.57□□□□□ -0.24
USP3-208ENST00000558285 PREX2Q70Z35 1606 aa13.56□□□□□ -0.24
USP3-208ENST00000558285 ZFYVE16Q7Z3T8 1539 aa13.56□□□□□ -0.24
USP3-208ENST00000558285 ZNF777Q9ULD5 760 aaPredicted RBP13.56□□□□□ -0.24
USP3-208ENST00000558285 MAP3K1Q13233 1512 aa13.55□□□□□ -0.24
USP3-208ENST00000558285 ARHGEF40Q8TER5 1519 aa13.55□□□□□ -0.24
USP3-208ENST00000558285 DCAF8L1A6NGE4 600 aa13.54□□□□□ -0.24
USP3-208ENST00000558285 RICTORQ6R327 1708 aa13.54□□□□□ -0.24
USP3-208ENST00000558285 KDM4FA0A1W2PPD8 638 aa13.53□□□□□ -0.24
USP3-208ENST00000558285 ITSN2Q9NZM3 1697 aa13.53□□□□□ -0.24
USP3-208ENST00000558285 TIAM1Q13009 1591 aa13.52□□□□□ -0.24
USP3-208ENST00000558285 FRMPD1Q5SYB0 1578 aa13.52□□□□□ -0.24
USP3-208ENST00000558285 GPATCH8Q9UKJ3 1502 aaKnown RBP13.52□□□□□ -0.24
USP3-208ENST00000558285 RSPH4AQ5TD94 716 aa13.52□□□□□ -0.25
USP3-208ENST00000558285 KIAA1107Q9UPP5 1409 aa13.52□□□□□ -0.25
USP3-208ENST00000558285 SUPT6HQ7KZ85 1726 aaKnown RBP13.52□□□□□ -0.25
USP3-208ENST00000558285 C9orf84Q5VXU9 1444 aa13.5□□□□□ -0.25
USP3-208ENST00000558285 ABCC1P33527 1531 aa13.5□□□□□ -0.25
USP3-208ENST00000558285 ATP10AO60312 1499 aa13.5□□□□□ -0.25
USP3-208ENST00000558285 CDC42BPBQ9Y5S2 1711 aa13.49□□□□□ -0.25
USP3-208ENST00000558285 C1QBPQ07021 282 aaKnown RBP13.49□□□□□ -0.25
USP3-208ENST00000558285 MLH3Q9UHC1 1453 aa13.49□□□□□ -0.25
USP3-208ENST00000558285 CDC42BPAQ5VT25 1732 aa13.48□□□□□ -0.25
USP3-208ENST00000558285 AFAP1Q8N556 730 aa13.48□□□□□ -0.25
USP3-208ENST00000558285 ESF1Q9H501 851 aaKnown RBP13.48□□□□□ -0.25
USP3-208ENST00000558285 LRRC9Q6ZRR7 1453 aa13.48□□□□□ -0.25
USP3-208ENST00000558285 KDM5CP41229 1560 aa13.48□□□□□ -0.25
USP3-208ENST00000558285 HECW2Q9P2P5 1572 aa13.48□□□□□ -0.25
USP3-208ENST00000558285 SPAG9O60271 1321 aaKnown RBP13.48□□□□□ -0.25
USP3-208ENST00000558285 NCOA2Q15596 1464 aa13.47□□□□□ -0.25
USP3-208ENST00000558285 YEATS2Q9ULM3 1422 aa13.45□□□□□ -0.26
USP3-208ENST00000558285 SYCP2Q9BX26 1530 aa13.44□□□□□ -0.26
USP3-208ENST00000558285 SAMD9LQ8IVG5 1584 aa13.43□□□□□ -0.26
USP3-208ENST00000558285 TRAPPC8Q9Y2L5 1435 aa13.43□□□□□ -0.26
USP3-208ENST00000558285 TSPY4P0CV99 314 aa13.43□□□□□ -0.26
USP3-208ENST00000558285 TSPY10P0CW01 314 aa13.43□□□□□ -0.26
USP3-208ENST00000558285 HNRNPMP52272 730 aaKnown RBP eCLIP13.43□□□□□ -0.263e-6■■□□□ 12.1
USP3-208ENST00000558285 MIA2Q96PC5 1412 aa13.42□□□□□ -0.26
USP3-208ENST00000558285 REREQ9P2R6 1566 aa13.42□□□□□ -0.26
USP3-208ENST00000558285 BCORL1Q5H9F3 1711 aa13.42□□□□□ -0.26
USP3-208ENST00000558285 KCNA4P22459 653 aa13.4□□□□□ -0.26
USP3-208ENST00000558285 MLECQ14165 292 aa13.4□□□□□ -0.26
USP3-208ENST00000558285 RTEL1-TNFRSF6BF6WH68 1400 aa13.4□□□□□ -0.26
USP3-208ENST00000558285 MYOM3Q5VTT5 1437 aa13.4□□□□□ -0.26
USP3-208ENST00000558285 CCDC141Q6ZP82 1450 aa13.4□□□□□ -0.26
USP3-208ENST00000558285 ARHGEF12Q9NZN5 1544 aa13.4□□□□□ -0.26
USP3-208ENST00000558285 ADAMTSL3P82987 1691 aa13.4□□□□□ -0.26
USP3-208ENST00000558285 PTPRMP28827 1452 aa13.39□□□□□ -0.27
USP3-208ENST00000558285 ATP7AQ04656 1500 aa13.39□□□□□ -0.27
USP3-208ENST00000558285 CAMSAP2Q08AD1 1489 aa13.39□□□□□ -0.27
USP3-208ENST00000558285 AGLP35573 1532 aa13.39□□□□□ -0.27
USP3-208ENST00000558285 DIP2CQ9Y2E4 1556 aa13.38□□□□□ -0.27
USP3-208ENST00000558285 CNTLNQ9NXG0 1405 aa13.37□□□□□ -0.27
USP3-208ENST00000558285 KANK4Q5T7N3 995 aaPredicted RBP13.36□□□□□ -0.27
USP3-208ENST00000558285 MADDQ8WXG6 1647 aa13.36□□□□□ -0.27
USP3-208ENST00000558285 ZNF644Q9H582 1327 aaPredicted RBP13.35□□□□□ -0.27
USP3-208ENST00000558285 ARHGEF5Q12774 1597 aa13.35□□□□□ -0.27
USP3-208ENST00000558285 A2MP01023 1474 aa13.35□□□□□ -0.27
USP3-208ENST00000558285 MBD5Q9P267 1494 aa13.35□□□□□ -0.27
USP3-208ENST00000558285 ABCA6Q8N139 1617 aa13.34□□□□□ -0.27
USP3-208ENST00000558285 INO80Q9ULG1 1556 aaPredicted RBP13.34□□□□□ -0.27
USP3-208ENST00000558285 KIDINS220Q9ULH0 1771 aa13.34□□□□□ -0.27
USP3-208ENST00000558285 RIMS1Q86UR5 1692 aaKnown RBP13.32□□□□□ -0.28
USP3-208ENST00000558285 ADGBQ8N7X0 1667 aa13.32□□□□□ -0.28
USP3-208ENST00000558285 FER1L4A9Z1Z3 1794 aa13.32□□□□□ -0.28
USP3-208ENST00000558285 DHX29Q7Z478 1369 aaKnown RBP13.3□□□□□ -0.28
USP3-208ENST00000558285 FGD6Q6ZV73 1430 aa13.29□□□□□ -0.28
USP3-208ENST00000558285 FAM135AQ9P2D6 1515 aa13.28□□□□□ -0.28
USP3-208ENST00000558285 GGT6Q6P531 493 aa13.27□□□□□ -0.28
USP3-208ENST00000558285 SHANK2Q9UPX8 1470 aa13.27□□□□□ -0.29
USP3-208ENST00000558285 PLXNC1O60486 1568 aa13.27□□□□□ -0.29
USP3-208ENST00000558285 PTPN23Q9H3S7 1636 aa13.26□□□□□ -0.29
USP3-208ENST00000558285 KIF3BO15066 747 aa13.26□□□□□ -0.29
USP3-208ENST00000558285 MAST1Q9Y2H9 1570 aa13.26□□□□□ -0.29
USP3-208ENST00000558285 FAM50AQ14320 339 aaKnown RBP13.25□□□□□ -0.29
USP3-208ENST00000558285 ANKRD30AQ9BXX3 1397 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 172.6 ms