RNA–Protein interactions for RNA: ENST00000557341.5

SNX6-210, Transcript of sorting nexin 6, humanhuman

TSL 5

Gene SNX6, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-210ENST00000557341 CASKIN1Q8WXD9 1431 aa23.17■■□□□ 1.3
SNX6-210ENST00000557341 CDC42BPBQ9Y5S2 1711 aa23.17■■□□□ 1.3
SNX6-210ENST00000557341 PREX2Q70Z35 1606 aa23.16■■□□□ 1.3
SNX6-210ENST00000557341 FYCO1Q9BQS8 1478 aa23.16■■□□□ 1.3
SNX6-210ENST00000557341 SIGLEC1Q9BZZ2 1709 aa23.16■■□□□ 1.3
SNX6-210ENST00000557341 POGZQ7Z3K3 1410 aa23.16■■□□□ 1.3
SNX6-210ENST00000557341 RIMS1Q86UR5 1692 aaKnown RBP23.14■■□□□ 1.29
SNX6-210ENST00000557341 MAGI2Q86UL8 1455 aa23.14■■□□□ 1.29
SNX6-210ENST00000557341 ARHGAP5Q13017 1502 aa23.13■■□□□ 1.29
SNX6-210ENST00000557341 CDC42BPAQ5VT25 1732 aa23.12■■□□□ 1.29
SNX6-210ENST00000557341 PTPRMP28827 1452 aa23.11■■□□□ 1.29
SNX6-210ENST00000557341 SCAPERQ9BY12 1400 aa23.11■■□□□ 1.29
SNX6-210ENST00000557341 FER1L4A9Z1Z3 1794 aa23.09■■□□□ 1.29
SNX6-210ENST00000557341 ARID4BQ4LE39 1312 aaPredicted RBP23.08■■□□□ 1.29
SNX6-210ENST00000557341 YEATS2Q9ULM3 1422 aa23.08■■□□□ 1.29
SNX6-210ENST00000557341 KDM5CP41229 1560 aa23.07■■□□□ 1.28
SNX6-210ENST00000557341 ITSN2Q9NZM3 1697 aa23.06■■□□□ 1.28
SNX6-210ENST00000557341 ZNF518AQ6AHZ1 1483 aa23.06■■□□□ 1.28
SNX6-210ENST00000557341 EFCAB2Q5VUJ9 269 aa23.06■■□□□ 1.28
SNX6-210ENST00000557341 ABCC1P33527 1531 aa23.03■■□□□ 1.28
SNX6-210ENST00000557341 C9orf84Q5VXU9 1444 aa22.99■■□□□ 1.27
SNX6-210ENST00000557341 ATP10AO60312 1499 aa22.98■■□□□ 1.27
SNX6-210ENST00000557341 DIP2CQ9Y2E4 1556 aa22.97■■□□□ 1.27
SNX6-210ENST00000557341 ABCA6Q8N139 1617 aa22.97■■□□□ 1.27
SNX6-210ENST00000557341 REREQ9P2R6 1566 aa22.95■■□□□ 1.26
SNX6-210ENST00000557341 SAMD9LQ8IVG5 1584 aa22.93■■□□□ 1.26
SNX6-210ENST00000557341 ARHGEF12Q9NZN5 1544 aa22.93■■□□□ 1.26
SNX6-210ENST00000557341 KIDINS220Q9ULH0 1771 aa22.91■■□□□ 1.26
SNX6-210ENST00000557341 LMTK3Q96Q04 1460 aa22.9■■□□□ 1.26
SNX6-210ENST00000557341 MLH3Q9UHC1 1453 aa22.9■■□□□ 1.26
SNX6-210ENST00000557341 CEP162Q5TB80 1403 aa22.9■■□□□ 1.26
SNX6-210ENST00000557341 EHBP1L1Q8N3D4 1523 aa22.87■■□□□ 1.25
SNX6-210ENST00000557341 SYCP2Q9BX26 1530 aa22.87■■□□□ 1.25
SNX6-210ENST00000557341 AFAP1Q8N556 730 aa22.87■■□□□ 1.25
SNX6-210ENST00000557341 TRAPPC8Q9Y2L5 1435 aa22.86■■□□□ 1.25
SNX6-210ENST00000557341 PREX1Q8TCU6 1659 aa22.86■■□□□ 1.25
SNX6-210ENST00000557341 GPATCH8Q9UKJ3 1502 aaKnown RBP22.86■■□□□ 1.25
SNX6-210ENST00000557341 MLECQ14165 292 aa22.85■■□□□ 1.25
SNX6-210ENST00000557341 MTUS2Q5JR59 1369 aa22.84■■□□□ 1.25
SNX6-210ENST00000557341 TIAM1Q13009 1591 aa22.84■■□□□ 1.25
SNX6-210ENST00000557341 MYT1LQ9UL68 1186 aa22.83■■□□□ 1.25
SNX6-210ENST00000557341 AGLP35573 1532 aa22.82■■□□□ 1.24
SNX6-210ENST00000557341 INO80Q9ULG1 1556 aaPredicted RBP22.8■■□□□ 1.24
SNX6-210ENST00000557341 C3P01024 1663 aa22.8■■□□□ 1.24
SNX6-210ENST00000557341 SUPT6HQ7KZ85 1726 aaKnown RBP22.79■■□□□ 1.24
SNX6-210ENST00000557341 PLEKHH2Q8IVE3 1493 aa22.79■■□□□ 1.24
SNX6-210ENST00000557341 CCNB3Q8WWL7 1395 aa22.78■■□□□ 1.24
SNX6-210ENST00000557341 ATP7AQ04656 1500 aa22.77■■□□□ 1.24
SNX6-210ENST00000557341 PLPPR3Q6T4P5 718 aa22.77■■□□□ 1.24
SNX6-210ENST00000557341 ZNF777Q9ULD5 760 aaPredicted RBP22.76■■□□□ 1.23
SNX6-210ENST00000557341 ADGBQ8N7X0 1667 aa22.74■■□□□ 1.23
SNX6-210ENST00000557341 KIAA1107Q9UPP5 1409 aa22.74■■□□□ 1.23
SNX6-210ENST00000557341 SETD1BQ9UPS6 1966 aaKnown RBP22.74■■□□□ 1.23
SNX6-210ENST00000557341 MROH2AA6NES4 1674 aa22.74■■□□□ 1.23
SNX6-210ENST00000557341 CFDP1Q9UEE9 299 aaPredicted RBP22.72■■□□□ 1.23
SNX6-210ENST00000557341 PLXNC1O60486 1568 aa22.72■■□□□ 1.23
SNX6-210ENST00000557341 ILDR1Q86SU0 546 aaPredicted RBP22.7■■□□□ 1.22
SNX6-210ENST00000557341 SPAG9O60271 1321 aaKnown RBP22.68■■□□□ 1.22
SNX6-210ENST00000557341 HNRNPMP52272 730 aaKnown RBP eCLIP22.67■■□□□ 1.22
SNX6-210ENST00000557341 VPS8Q8N3P4 1428 aa22.66■■□□□ 1.22
SNX6-210ENST00000557341 NCOA2Q15596 1464 aa22.66■■□□□ 1.22
SNX6-210ENST00000557341 CLTCQ00610 1675 aaKnown RBP22.65■■□□□ 1.22
SNX6-210ENST00000557341 CNTLNQ9NXG0 1405 aa22.65■■□□□ 1.22
SNX6-210ENST00000557341 HSPA2P54652 639 aa22.64■■□□□ 1.21
SNX6-210ENST00000557341 A2MP01023 1474 aa22.63■■□□□ 1.21
SNX6-210ENST00000557341 UHRF1BP1Q6BDS2 1440 aa22.63■■□□□ 1.21
SNX6-210ENST00000557341 CEBPAP49715 358 aaPredicted RBP22.62■■□□□ 1.21
SNX6-210ENST00000557341 ESF1Q9H501 851 aaKnown RBP22.62■■□□□ 1.21
SNX6-210ENST00000557341 STRCQ7RTU9 1775 aa22.62■■□□□ 1.21
SNX6-210ENST00000557341 CAMSAP2Q08AD1 1489 aa22.61■■□□□ 1.21
SNX6-210ENST00000557341 MBD5Q9P267 1494 aa22.61■■□□□ 1.21
SNX6-210ENST00000557341 CCDC141Q6ZP82 1450 aa22.58■■□□□ 1.2
SNX6-210ENST00000557341 LRRC9Q6ZRR7 1453 aa22.58■■□□□ 1.2
SNX6-210ENST00000557341 ZNF644Q9H582 1327 aaPredicted RBP22.57■■□□□ 1.2
SNX6-210ENST00000557341 LOC105371045A0A1W2PR82 267 aa22.57■■□□□ 1.2
SNX6-210ENST00000557341 MAP3K1Q13233 1512 aa22.57■■□□□ 1.2
SNX6-210ENST00000557341 ARHGEF5Q12774 1597 aa22.56■■□□□ 1.2
SNX6-210ENST00000557341 RTEL1-TNFRSF6BF6WH68 1400 aa22.56■■□□□ 1.2
SNX6-210ENST00000557341 ZNF142P52746 1687 aaPredicted RBP22.54■■□□□ 1.2
SNX6-210ENST00000557341 MYO3AQ8NEV4 1616 aa22.53■■□□□ 1.2
SNX6-210ENST00000557341 NPATQ14207 1427 aa22.51■■□□□ 1.19
SNX6-210ENST00000557341 FBXO41Q8TF61 875 aa22.48■■□□□ 1.19
SNX6-210ENST00000557341 ZMYM3Q14202 1370 aa22.47■■□□□ 1.19
SNX6-210ENST00000557341 FAM135AQ9P2D6 1515 aa22.47■■□□□ 1.19
SNX6-210ENST00000557341 MAST1Q9Y2H9 1570 aa22.46■■□□□ 1.19
SNX6-210ENST00000557341 CROCC2H7BZ55 1655 aa22.43■■□□□ 1.18
SNX6-210ENST00000557341 DHX29Q7Z478 1369 aaKnown RBP22.43■■□□□ 1.18
SNX6-210ENST00000557341 RSPH4AQ5TD94 716 aa22.43■■□□□ 1.18
SNX6-210ENST00000557341 GGT6Q6P531 493 aa22.43■■□□□ 1.18
SNX6-210ENST00000557341 CAMSAP1Q5T5Y3 1602 aa22.42■■□□□ 1.18
SNX6-210ENST00000557341 CEP170BQ9Y4F5 1589 aaPredicted RBP22.42■■□□□ 1.18
SNX6-210ENST00000557341 KDM5DQ9BY66 1539 aa22.42■■□□□ 1.18
SNX6-210ENST00000557341 MYOM3Q5VTT5 1437 aa22.41■■□□□ 1.18
SNX6-210ENST00000557341 EIF2AK4Q9P2K8 1649 aaKnown RBP22.41■■□□□ 1.18
SNX6-210ENST00000557341 DMRT2Q9Y5R5 561 aa22.4■■□□□ 1.18
SNX6-210ENST00000557341 PTPRKQ15262 1439 aa22.4■■□□□ 1.18
SNX6-210ENST00000557341 NCOA1Q15788 1441 aa22.4■■□□□ 1.18
SNX6-210ENST00000557341 MIA2Q96PC5 1412 aa22.4■■□□□ 1.18
SNX6-210ENST00000557341 ZC3H13Q5T200 1668 aaKnown RBP22.39■■□□□ 1.18
SNX6-210ENST00000557341 RNF17Q9BXT8 1623 aaKnown RBP22.39■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms