RNA–Protein interactions for RNA: ENST00000557341.5

SNX6-210, Transcript of sorting nexin 6, humanhuman

TSL 5

Gene SNX6, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-210ENST00000557341 NISCHQ9Y2I1 1504 aa35.42■■■■□ 3.26
SNX6-210ENST00000557341 CCDC180Q9P1Z9 1646 aa31.9■■■□□ 2.7
SNX6-210ENST00000557341 ABCC9O60706 1549 aa31.49■■■□□ 2.63
SNX6-210ENST00000557341 RB1CC1Q8TDY2 1594 aa30.17■■■□□ 2.42
SNX6-210ENST00000557341 NACADO15069 1562 aa29.98■■■□□ 2.39
SNX6-210ENST00000557341 UNC13AQ9UPW8 1703 aa29.65■■■□□ 2.34
SNX6-210ENST00000557341 MYO15BQ96JP2 1530 aa29.63■■■□□ 2.33
SNX6-210ENST00000557341 DCAF8L2P0C7V8 631 aa29.63■■■□□ 2.33
SNX6-210ENST00000557341 ZCCHC6Q5VYS8 1495 aaKnown RBP29.44■■■□□ 2.3
SNX6-210ENST00000557341 DCAF1Q9Y4B6 1507 aa29.32■■■□□ 2.28
SNX6-210ENST00000557341 BICRAQ9NZM4 1560 aa29.26■■■□□ 2.27
SNX6-210ENST00000557341 PABPN1Q86U42 306 aaKnown RBP eCLIP29.21■■■□□ 2.27
SNX6-210ENST00000557341 DNAJC5BQ9UF47 199 aa29.2■■■□□ 2.26
SNX6-210ENST00000557341 SCRIBQ14160 1630 aa28.98■■■□□ 2.23
SNX6-210ENST00000557341 SHROOM4Q9ULL8 1493 aa28.93■■■□□ 2.22
SNX6-210ENST00000557341 CC2D2AQ9P2K1 1620 aa28.55■■■□□ 2.16
SNX6-210ENST00000557341 EIF4G1Q04637 1599 aaKnown RBP28.53■■■□□ 2.16
SNX6-210ENST00000557341 CECR2Q9BXF3 1484 aa28.35■■■□□ 2.13
SNX6-210ENST00000557341 SMARCA4P51532 1647 aa27.68■■■□□ 2.02
SNX6-210ENST00000557341 NCAPD3P42695 1498 aa27.58■■■□□ 2.01
SNX6-210ENST00000557341 SMARCA2P51531 1590 aa27.56■■■□□ 2
SNX6-210ENST00000557341 BAZ1AQ9NRL2 1556 aaPredicted RBP27.54■■■□□ 2
SNX6-210ENST00000557341 ATAD2BQ9ULI0 1458 aa27.54■■■□□ 2
SNX6-210ENST00000557341 HMGXB3Q12766 1538 aa27.52■■■□□ 2
SNX6-210ENST00000557341 PEG3Q9GZU2 1588 aa27.4■■□□□ 1.98
SNX6-210ENST00000557341 BAZ1BQ9UIG0 1483 aaKnown RBP27.33■■□□□ 1.97
SNX6-210ENST00000557341 MROH2BQ7Z745 1585 aa27.28■■□□□ 1.96
SNX6-210ENST00000557341 ERCC6Q03468 1493 aa27.21■■□□□ 1.95
SNX6-210ENST00000557341 CUX2O14529 1486 aa27.13■■□□□ 1.93
SNX6-210ENST00000557341 NESP48681 1621 aa27.11■■□□□ 1.93
SNX6-210ENST00000557341 LAMC3Q9Y6N6 1575 aa27.06■■□□□ 1.92
SNX6-210ENST00000557341 WIZO95785 1651 aa27.05■■□□□ 1.92
SNX6-210ENST00000557341 KIF21AQ7Z4S6 1674 aa26.95■■□□□ 1.9
SNX6-210ENST00000557341 THOC2Q8NI27 1593 aaKnown RBP26.93■■□□□ 1.9
SNX6-210ENST00000557341 PDS5BQ9NTI5 1447 aa26.79■■□□□ 1.88
SNX6-210ENST00000557341 RSF1Q96T23 1441 aaPredicted RBP26.73■■□□□ 1.87
SNX6-210ENST00000557341 CADPSQ9ULU8 1353 aa26.72■■□□□ 1.87
SNX6-210ENST00000557341 DNAJC5Q9H3Z4 198 aa26.72■■□□□ 1.87
SNX6-210ENST00000557341 TOP2AP11388 1531 aaKnown RBP26.71■■□□□ 1.87
SNX6-210ENST00000557341 MRC2Q9UBG0 1479 aa26.59■■□□□ 1.85
SNX6-210ENST00000557341 PRDM2Q13029 1718 aa26.57■■□□□ 1.84
SNX6-210ENST00000557341 WDR62O43379 1518 aa26.56■■□□□ 1.84
SNX6-210ENST00000557341 CEP164Q9UPV0 1460 aa26.54■■□□□ 1.84
SNX6-210ENST00000557341 CFTRP13569 1480 aa26.51■■□□□ 1.83
SNX6-210ENST00000557341 FANCD2Q9BXW9 1451 aa26.49■■□□□ 1.83
SNX6-210ENST00000557341 CCDC88BA6NC98 1476 aa26.3■■□□□ 1.8
SNX6-210ENST00000557341 URB2Q14146 1524 aaKnown RBP26.26■■□□□ 1.79
SNX6-210ENST00000557341 TOPBP1Q92547 1522 aa26.02■■□□□ 1.76
SNX6-210ENST00000557341 DNMBPQ6XZF7 1577 aa26■■□□□ 1.75
SNX6-210ENST00000557341 ABCC8Q09428 1581 aa25.99■■□□□ 1.75
SNX6-210ENST00000557341 IFT140Q96RY7 1462 aa25.97■■□□□ 1.75
SNX6-210ENST00000557341 EIF4G3O43432 1585 aaKnown RBP25.89■■□□□ 1.73
SNX6-210ENST00000557341 ZNF608Q9ULD9 1512 aaPredicted RBP25.88■■□□□ 1.73
SNX6-210ENST00000557341 TARBP1Q13395 1621 aaKnown RBP25.84■■□□□ 1.73
SNX6-210ENST00000557341 OSCARQ8IYS5 282 aa25.76■■□□□ 1.71
SNX6-210ENST00000557341 POLA1P09884 1462 aaPredicted RBP25.76■■□□□ 1.71
SNX6-210ENST00000557341 CHD1O14646 1710 aa25.71■■□□□ 1.71
SNX6-210ENST00000557341 WDR97A6NE52 1622 aa25.66■■□□□ 1.7
SNX6-210ENST00000557341 CUX1P39880 1505 aa25.64■■□□□ 1.7
SNX6-210ENST00000557341 TRIM41Q8WV44 630 aa25.63■■□□□ 1.69
SNX6-210ENST00000557341 FGD5Q6ZNL6 1462 aa25.63■■□□□ 1.69
SNX6-210ENST00000557341 AQRO60306 1485 aaKnown RBP eCLIP25.62■■□□□ 1.699e-7■■■■■ 36.7
SNX6-210ENST00000557341 RIMBP3CA6NJZ7 1639 aa25.61■■□□□ 1.69
SNX6-210ENST00000557341 RIMBP3BA6NNM3 1639 aa25.61■■□□□ 1.69
SNX6-210ENST00000557341 RIMBP3Q9UFD9 1639 aa25.61■■□□□ 1.69
SNX6-210ENST00000557341 RAD54L2Q9Y4B4 1467 aa25.6■■□□□ 1.69
SNX6-210ENST00000557341 SUPT5HO00267 1087 aaKnown RBP25.59■■□□□ 1.69
SNX6-210ENST00000557341 SOGA1O94964 1423 aa25.58■■□□□ 1.69
SNX6-210ENST00000557341 PBRM1Q86U86 1689 aa25.51■■□□□ 1.67
SNX6-210ENST00000557341 ARHGEF11O15085 1522 aa25.49■■□□□ 1.67
SNX6-210ENST00000557341 TDRD9Q8NDG6 1382 aaKnown RBP25.47■■□□□ 1.67
SNX6-210ENST00000557341 SNAPC4Q5SXM2 1469 aa25.46■■□□□ 1.67
SNX6-210ENST00000557341 MAGI1Q96QZ7 1491 aaPredicted RBP25.41■■□□□ 1.66
SNX6-210ENST00000557341 BIVM-ERCC5R4GMW8 1640 aa25.41■■□□□ 1.66
SNX6-210ENST00000557341 ABCA5Q8WWZ7 1642 aa25.4■■□□□ 1.66
SNX6-210ENST00000557341 GRIN2BQ13224 1484 aa25.4■■□□□ 1.66
SNX6-210ENST00000557341 FBLN2P98095 1184 aa25.37■■□□□ 1.65
SNX6-210ENST00000557341 ABCA10Q8WWZ4 1543 aa25.36■■□□□ 1.65
SNX6-210ENST00000557341 TOP2BQ02880 1626 aa25.35■■□□□ 1.65
SNX6-210ENST00000557341 SYNJ1O43426 1573 aa25.35■■□□□ 1.65
SNX6-210ENST00000557341 GAPVD1Q14C86 1478 aa25.33■■□□□ 1.65
SNX6-210ENST00000557341 CLASP1Q7Z460 1538 aa25.32■■□□□ 1.64
SNX6-210ENST00000557341 SYNJ2O15056 1496 aa25.3■■□□□ 1.64
SNX6-210ENST00000557341 WRNQ14191 1432 aaPredicted RBP eCLIP25.25■■□□□ 1.63
SNX6-210ENST00000557341 ARAP1Q96P48 1450 aa25.23■■□□□ 1.63
SNX6-210ENST00000557341 CHMP7Q8WUX9 453 aaPredicted RBP25.22■■□□□ 1.63
SNX6-210ENST00000557341 ADAMTS12P58397 1594 aa25.18■■□□□ 1.62
SNX6-210ENST00000557341 CYB5RLQ6IPT4 315 aa25.13■■□□□ 1.61
SNX6-210ENST00000557341 GRIN2AQ12879 1464 aa25.09■■□□□ 1.61
SNX6-210ENST00000557341 ERICH3Q5RHP9 1530 aa25.08■■□□□ 1.61
SNX6-210ENST00000557341 CEP170Q5SW79 1584 aa25.03■■□□□ 1.6
SNX6-210ENST00000557341 FHAD1B1AJZ9 1412 aa25■■□□□ 1.59
SNX6-210ENST00000557341 NUP160Q12769 1436 aa24.97■■□□□ 1.59
SNX6-210ENST00000557341 SHROOM2Q13796 1616 aa24.95■■□□□ 1.58
SNX6-210ENST00000557341 ERCC6L2Q5T890 1561 aa24.89■■□□□ 1.58
SNX6-210ENST00000557341 RUSC2Q8N2Y8 1516 aa24.85■■□□□ 1.57
SNX6-210ENST00000557341 CUL7Q14999 1698 aa24.85■■□□□ 1.57
SNX6-210ENST00000557341 TRHP20396 242 aaPredicted RBP24.81■■□□□ 1.56
SNX6-210ENST00000557341 KIF27Q86VH2 1401 aa24.76■■□□□ 1.55
SNX6-210ENST00000557341 PRG4Q92954 1404 aaPredicted RBP24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms