RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 KIF13AQ9H1H9 1805 aa21.8■■□□□ 1.08
VPS33B-205ENST00000556096 ABCC10Q5T3U5 1492 aa21.8■■□□□ 1.08
VPS33B-205ENST00000556096 PTPRKQ15262 1439 aa21.78■■□□□ 1.08
VPS33B-205ENST00000556096 CDC42BPAQ5VT25 1732 aa21.77■■□□□ 1.07
VPS33B-205ENST00000556096 ITSN2Q9NZM3 1697 aa21.76■■□□□ 1.07
VPS33B-205ENST00000556096 TTC37Q6PGP7 1564 aa21.74■■□□□ 1.07
VPS33B-205ENST00000556096 HFM1A2PYH4 1435 aa21.74■■□□□ 1.07
VPS33B-205ENST00000556096 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.73■■□□□ 1.07
VPS33B-205ENST00000556096 TSPOAP1O95153 1857 aa21.72■■□□□ 1.07
VPS33B-205ENST00000556096 GPATCH8Q9UKJ3 1502 aaKnown RBP21.72■■□□□ 1.07
VPS33B-205ENST00000556096 AKNAQ7Z591 1439 aa21.69■■□□□ 1.06
VPS33B-205ENST00000556096 PREX2Q70Z35 1606 aa21.68■■□□□ 1.06
VPS33B-205ENST00000556096 MYO5CQ9NQX4 1742 aa21.68■■□□□ 1.06
VPS33B-205ENST00000556096 NAIPQ13075 1403 aa21.68■■□□□ 1.06
VPS33B-205ENST00000556096 GLI2P10070 1586 aa21.68■■□□□ 1.06
VPS33B-205ENST00000556096 CDC42BPBQ9Y5S2 1711 aa21.68■■□□□ 1.06
VPS33B-205ENST00000556096 CFDP1Q9UEE9 299 aaPredicted RBP21.66■■□□□ 1.06
VPS33B-205ENST00000556096 DNMT1P26358 1616 aaKnown RBP21.65■■□□□ 1.06
VPS33B-205ENST00000556096 MAP3K4Q9Y6R4 1608 aa21.64■■□□□ 1.06
VPS33B-205ENST00000556096 DAPK1P53355 1430 aa21.64■■□□□ 1.05
VPS33B-205ENST00000556096 ABCA9Q8IUA7 1624 aa21.64■■□□□ 1.05
VPS33B-205ENST00000556096 CD109Q6YHK3 1445 aa21.63■■□□□ 1.05
VPS33B-205ENST00000556096 CAMSAP2Q08AD1 1489 aa21.62■■□□□ 1.05
VPS33B-205ENST00000556096 ABCC5O15440 1437 aa21.62■■□□□ 1.05
VPS33B-205ENST00000556096 ROCK1Q13464 1354 aa21.62■■□□□ 1.05
VPS33B-205ENST00000556096 ZNF644Q9H582 1327 aaPredicted RBP21.61■■□□□ 1.05
VPS33B-205ENST00000556096 PPRC1Q5VV67 1664 aaKnown RBP21.6■■□□□ 1.05
VPS33B-205ENST00000556096 GCC2Q8IWJ2 1684 aa21.6■■□□□ 1.05
VPS33B-205ENST00000556096 CHIC2Q9UKJ5 165 aa21.58■■□□□ 1.04
VPS33B-205ENST00000556096 ARHGAP5Q13017 1502 aa21.57■■□□□ 1.04
VPS33B-205ENST00000556096 RRP7BPQ9NSQ0 103 aa21.55■■□□□ 1.04
VPS33B-205ENST00000556096 SAMD9LQ8IVG5 1584 aa21.55■■□□□ 1.04
VPS33B-205ENST00000556096 ACIN1Q9UKV3 1341 aaKnown RBP21.55■■□□□ 1.04
VPS33B-205ENST00000556096 PLCH2O75038 1416 aa21.55■■□□□ 1.04
VPS33B-205ENST00000556096 ZNF777Q9ULD5 760 aaPredicted RBP21.54■■□□□ 1.04
VPS33B-205ENST00000556096 ARAP3Q8WWN8 1544 aa21.52■■□□□ 1.04
VPS33B-205ENST00000556096 ADGRL2O95490 1459 aa21.49■■□□□ 1.03
VPS33B-205ENST00000556096 CROCC2H7BZ55 1655 aa21.49■■□□□ 1.03
VPS33B-205ENST00000556096 ADGBQ8N7X0 1667 aa21.47■■□□□ 1.03
VPS33B-205ENST00000556096 TEX14Q8IWB6 1497 aa21.47■■□□□ 1.03
VPS33B-205ENST00000556096 SHANK2Q9UPX8 1470 aa21.47■■□□□ 1.03
VPS33B-205ENST00000556096 FANCAO15360 1455 aa21.46■■□□□ 1.03
VPS33B-205ENST00000556096 NCOA1Q15788 1441 aa21.46■■□□□ 1.03
VPS33B-205ENST00000556096 ARHGEF5Q12774 1597 aa21.46■■□□□ 1.03
VPS33B-205ENST00000556096 SYCP2Q9BX26 1530 aa21.46■■□□□ 1.03
VPS33B-205ENST00000556096 KDM6BO15054 1643 aa21.45■■□□□ 1.02
VPS33B-205ENST00000556096 RSPH4AQ5TD94 716 aa21.44■■□□□ 1.02
VPS33B-205ENST00000556096 EFCAB2Q5VUJ9 269 aa21.44■■□□□ 1.02
VPS33B-205ENST00000556096 TIMELESSQ9UNS1 1208 aa21.44■■□□□ 1.02
VPS33B-205ENST00000556096 ABCC1P33527 1531 aa21.44■■□□□ 1.02
VPS33B-205ENST00000556096 MBD5Q9P267 1494 aa21.43■■□□□ 1.02
VPS33B-205ENST00000556096 ANKRD30AQ9BXX3 1397 aa21.42■■□□□ 1.02
VPS33B-205ENST00000556096 CFAP74Q9C0B2 1584 aa21.42■■□□□ 1.02
VPS33B-205ENST00000556096 PLEKHH2Q8IVE3 1493 aa21.42■■□□□ 1.02
VPS33B-205ENST00000556096 COL17A1Q9UMD9 1497 aaPredicted RBP21.41■■□□□ 1.02
VPS33B-205ENST00000556096 ARHGEF12Q9NZN5 1544 aa21.41■■□□□ 1.02
VPS33B-205ENST00000556096 KIAA1107Q9UPP5 1409 aa21.4■■□□□ 1.02
VPS33B-205ENST00000556096 ZNF316A6NFI3 1004 aaPredicted RBP21.4■■□□□ 1.02
VPS33B-205ENST00000556096 HNRNPMP52272 730 aaKnown RBP eCLIP21.4■■□□□ 1.02
VPS33B-205ENST00000556096 TSPY4P0CV99 314 aa21.39■■□□□ 1.01
VPS33B-205ENST00000556096 TSPY10P0CW01 314 aa21.39■■□□□ 1.01
VPS33B-205ENST00000556096 C9orf84Q5VXU9 1444 aa21.39■■□□□ 1.01
VPS33B-205ENST00000556096 NEO1Q92859 1461 aa21.38■■□□□ 1.01
VPS33B-205ENST00000556096 CCDC141Q6ZP82 1450 aa21.38■■□□□ 1.01
VPS33B-205ENST00000556096 TRIM52Q96A61 297 aa21.38■■□□□ 1.01
VPS33B-205ENST00000556096 SIN3AQ96ST3 1273 aa21.38■■□□□ 1.01
VPS33B-205ENST00000556096 ADGRL1O94910 1474 aa21.37■■□□□ 1.01
VPS33B-205ENST00000556096 RAPGEF3O95398 923 aa21.36■■□□□ 1.01
VPS33B-205ENST00000556096 SCAPERQ9BY12 1400 aa21.34■■□□□ 1.01
VPS33B-205ENST00000556096 DENND4BO75064 1496 aaPredicted RBP21.33■■□□□ 1.01
VPS33B-205ENST00000556096 MPHOSPH9Q99550 1183 aa21.33■■□□□ 1.01
VPS33B-205ENST00000556096 NEUROD1Q13562 356 aa21.32■■□□□ 1
VPS33B-205ENST00000556096 TRAPPC8Q9Y2L5 1435 aa21.32■■□□□ 1
VPS33B-205ENST00000556096 MAST1Q9Y2H9 1570 aa21.31■■□□□ 1
VPS33B-205ENST00000556096 ANKRD50Q9ULJ7 1429 aa21.3■■□□□ 1
VPS33B-205ENST00000556096 FRMPD1Q5SYB0 1578 aa21.28■■□□□ 1
VPS33B-205ENST00000556096 AFAP1Q8N556 730 aa21.28■■□□□ 1
VPS33B-205ENST00000556096 RICTORQ6R327 1708 aa21.26■□□□□ 0.99
VPS33B-205ENST00000556096 KIF15Q9NS87 1388 aa21.26■□□□□ 0.99
VPS33B-205ENST00000556096 POGZQ7Z3K3 1410 aa21.25■□□□□ 0.99
VPS33B-205ENST00000556096 PLXNC1O60486 1568 aa21.24■□□□□ 0.99
VPS33B-205ENST00000556096 PZPP20742 1482 aa21.23■□□□□ 0.99
VPS33B-205ENST00000556096 INO80Q9ULG1 1556 aaPredicted RBP21.23■□□□□ 0.99
VPS33B-205ENST00000556096 PPP1R15AO75807 674 aaPredicted RBP21.23■□□□□ 0.99
VPS33B-205ENST00000556096 ZFYVE16Q7Z3T8 1539 aa21.23■□□□□ 0.99
VPS33B-205ENST00000556096 TONSLQ96HA7 1378 aa21.23■□□□□ 0.99
VPS33B-205ENST00000556096 SLC4A1APQ9BWU0 796 aaKnown RBP21.22■□□□□ 0.99
VPS33B-205ENST00000556096 MYT1LQ9UL68 1186 aa21.22■□□□□ 0.99
VPS33B-205ENST00000556096 DIEXFQ68CQ4 756 aaKnown RBP21.21■□□□□ 0.99
VPS33B-205ENST00000556096 ZNF518AQ6AHZ1 1483 aa21.21■□□□□ 0.99
VPS33B-205ENST00000556096 KDM5CP41229 1560 aa21.21■□□□□ 0.99
VPS33B-205ENST00000556096 ANKRD30BQ9BXX2 1392 aa21.2■□□□□ 0.98
VPS33B-205ENST00000556096 ATP7AQ04656 1500 aa21.19■□□□□ 0.98
VPS33B-205ENST00000556096 KDM5DQ9BY66 1539 aa21.19■□□□□ 0.98
VPS33B-205ENST00000556096 SPAG9O60271 1321 aaKnown RBP21.19■□□□□ 0.98
VPS33B-205ENST00000556096 KIDINS220Q9ULH0 1771 aa21.18■□□□□ 0.98
VPS33B-205ENST00000556096 RTEL1-TNFRSF6BF6WH68 1400 aa21.17■□□□□ 0.98
VPS33B-205ENST00000556096 HECW2Q9P2P5 1572 aa21.16■□□□□ 0.98
VPS33B-205ENST00000556096 YEATS2Q9ULM3 1422 aa21.16■□□□□ 0.98
VPS33B-205ENST00000556096 NUP155O75694 1391 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms