RNA–Protein interactions for RNA: ENST00000555880.5

TDP1-213, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5 BASIC

Gene TDP1, Length 1,894 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-213ENST00000555880 CCDC18Q5T9S5 1454 aa9.97□□□□□ -0.81
TDP1-213ENST00000555880 IFT140Q96RY7 1462 aa9.97□□□□□ -0.81
TDP1-213ENST00000555880 LRRIQ1Q96JM4 1722 aa9.97□□□□□ -0.81
TDP1-213ENST00000555880 GRIN2BQ13224 1484 aa9.97□□□□□ -0.81
TDP1-213ENST00000555880 SIN3AQ96ST3 1273 aa9.97□□□□□ -0.81
TDP1-213ENST00000555880 HFM1A2PYH4 1435 aa9.96□□□□□ -0.82
TDP1-213ENST00000555880 MYOM3Q5VTT5 1437 aa9.96□□□□□ -0.82
TDP1-213ENST00000555880 NCOA2Q15596 1464 aa9.96□□□□□ -0.82
TDP1-213ENST00000555880 PTPN23Q9H3S7 1636 aa9.96□□□□□ -0.82
TDP1-213ENST00000555880 SPDYE1Q8NFV5 336 aaPredicted RBP9.96□□□□□ -0.82
TDP1-213ENST00000555880 WDR62O43379 1518 aa9.95□□□□□ -0.82
TDP1-213ENST00000555880 PBRM1Q86U86 1689 aa9.95□□□□□ -0.82
TDP1-213ENST00000555880 TARBP1Q13395 1621 aaKnown RBP9.95□□□□□ -0.82
TDP1-213ENST00000555880 TONSLQ96HA7 1378 aa9.94□□□□□ -0.82
TDP1-213ENST00000555880 UACAQ9BZF9 1416 aa9.94□□□□□ -0.82
TDP1-213ENST00000555880 HECW1Q76N89 1606 aa9.94□□□□□ -0.82
TDP1-213ENST00000555880 PPP1R15AO75807 674 aaPredicted RBP9.92□□□□□ -0.82
TDP1-213ENST00000555880 UGGT2Q9NYU1 1516 aa9.92□□□□□ -0.82
TDP1-213ENST00000555880 DDX10Q13206 875 aaKnown RBP9.91□□□□□ -0.82
TDP1-213ENST00000555880 IQGAP2Q13576 1575 aa9.91□□□□□ -0.82
TDP1-213ENST00000555880 MYT1Q01538 1121 aa9.91□□□□□ -0.82
TDP1-213ENST00000555880 SUPT16HQ9Y5B9 1047 aaKnown RBP9.9□□□□□ -0.82
TDP1-213ENST00000555880 NAIPQ13075 1403 aa9.9□□□□□ -0.82
TDP1-213ENST00000555880 GCC2Q8IWJ2 1684 aa9.9□□□□□ -0.83
TDP1-213ENST00000555880 PTPRKQ15262 1439 aa9.89□□□□□ -0.83
TDP1-213ENST00000555880 ARHGEF11O15085 1522 aa9.89□□□□□ -0.83
TDP1-213ENST00000555880 ADAMTS12P58397 1594 aa9.89□□□□□ -0.83
TDP1-213ENST00000555880 ZNF608Q9ULD9 1512 aaPredicted RBP9.88□□□□□ -0.83
TDP1-213ENST00000555880 TCOF1Q13428 1488 aaKnown RBP9.87□□□□□ -0.83
TDP1-213ENST00000555880 ANP32CO43423 234 aa9.87□□□□□ -0.83
TDP1-213ENST00000555880 PRKAR2AP13861 404 aaKnown RBP9.87□□□□□ -0.83
TDP1-213ENST00000555880 EPRSP07814 1512 aaKnown RBP9.86□□□□□ -0.83
TDP1-213ENST00000555880 MAGI3Q5TCQ9 1506 aa9.86□□□□□ -0.83
TDP1-213ENST00000555880 AKNAQ7Z591 1439 aa9.86□□□□□ -0.83
TDP1-213ENST00000555880 CCER2I3L3R5 266 aa9.86□□□□□ -0.83
TDP1-213ENST00000555880 HAX1O00165 279 aa9.86□□□□□ -0.83
TDP1-213ENST00000555880 CHMP7Q8WUX9 453 aaPredicted RBP9.85□□□□□ -0.83
TDP1-213ENST00000555880 SP7Q8TDD2 431 aaPredicted RBP9.85□□□□□ -0.83
TDP1-213ENST00000555880 KCNH8Q96L42 1107 aa9.85□□□□□ -0.83
TDP1-213ENST00000555880 MIA2Q96PC5 1412 aa9.84□□□□□ -0.83
TDP1-213ENST00000555880 HIRIP3Q9BW71 556 aaPredicted RBP9.83□□□□□ -0.84
TDP1-213ENST00000555880 CDK13Q14004 1512 aaKnown RBP9.82□□□□□ -0.84
TDP1-213ENST00000555880 RRP7BPQ9NSQ0 103 aa9.82□□□□□ -0.84
TDP1-213ENST00000555880 MAGI1Q96QZ7 1491 aaPredicted RBP9.82□□□□□ -0.84
TDP1-213ENST00000555880 TRIM52Q96A61 297 aa9.81□□□□□ -0.84
TDP1-213ENST00000555880 EIF4G3O43432 1585 aaKnown RBP9.81□□□□□ -0.84
TDP1-213ENST00000555880 NEFLP07196 543 aa9.81□□□□□ -0.84
TDP1-213ENST00000555880 CHADLQ6NUI6 762 aa9.81□□□□□ -0.84
TDP1-213ENST00000555880 CHIC2Q9UKJ5 165 aa9.81□□□□□ -0.84
TDP1-213ENST00000555880 PRR29P0C7W0 189 aa9.8□□□□□ -0.84
TDP1-213ENST00000555880 KIAA0556O60303 1618 aa9.79□□□□□ -0.84
TDP1-213ENST00000555880 KDM5BQ9UGL1 1544 aa9.79□□□□□ -0.84
TDP1-213ENST00000555880 GRIN2AQ12879 1464 aa9.79□□□□□ -0.84
TDP1-213ENST00000555880 EVX2Q03828 476 aa9.79□□□□□ -0.84
TDP1-213ENST00000555880 KIAA0586Q9BVV6 1533 aa9.78□□□□□ -0.84
TDP1-213ENST00000555880 SYNJ2O15056 1496 aa9.78□□□□□ -0.84
TDP1-213ENST00000555880 RAPGEF6Q8TEU7 1601 aa9.77□□□□□ -0.84
TDP1-213ENST00000555880 ROCK1Q13464 1354 aa9.77□□□□□ -0.84
TDP1-213ENST00000555880 SPDYE4A6NLX3 237 aa9.77□□□□□ -0.85
TDP1-213ENST00000555880 CDK11AQ9UQ88 783 aaPredicted RBP9.77□□□□□ -0.85
TDP1-213ENST00000555880 KDM6BO15054 1643 aa9.77□□□□□ -0.85
TDP1-213ENST00000555880 DNMT1P26358 1616 aaKnown RBP9.77□□□□□ -0.85
TDP1-213ENST00000555880 DAPK1P53355 1430 aa9.76□□□□□ -0.85
TDP1-213ENST00000555880 MPHOSPH9Q99550 1183 aa9.76□□□□□ -0.85
TDP1-213ENST00000555880 ARID3CA6NKF2 412 aa9.75□□□□□ -0.85
TDP1-213ENST00000555880 EIF4G2P78344 907 aaKnown RBP eCLIP9.75□□□□□ -0.85
TDP1-213ENST00000555880 FKBP8Q14318 412 aa9.75□□□□□ -0.85
TDP1-213ENST00000555880 DISP1Q96F81 1524 aa9.75□□□□□ -0.85
TDP1-213ENST00000555880 ITSN2Q9NZM3 1697 aa9.75□□□□□ -0.85
TDP1-213ENST00000555880 DENND4BO75064 1496 aaPredicted RBP9.74□□□□□ -0.85
TDP1-213ENST00000555880 NUP153P49790 1475 aaKnown RBP9.74□□□□□ -0.85
TDP1-213ENST00000555880 HSPA5P11021 654 aaKnown RBP9.73□□□□□ -0.85
TDP1-213ENST00000555880 ADGBQ8N7X0 1667 aa9.73□□□□□ -0.85
TDP1-213ENST00000555880 CARMIL2Q6F5E8 1435 aa9.72□□□□□ -0.85
TDP1-213ENST00000555880 BCANQ96GW7 911 aa9.72□□□□□ -0.85
TDP1-213ENST00000555880 JPH4Q96JJ6 628 aa9.72□□□□□ -0.85
TDP1-213ENST00000555880 ABCC5O15440 1437 aa9.72□□□□□ -0.85
TDP1-213ENST00000555880 RPRD2Q5VT52 1461 aaKnown RBP9.72□□□□□ -0.85
TDP1-213ENST00000555880 WASHC2AQ641Q2 1341 aa9.71□□□□□ -0.85
TDP1-213ENST00000555880 TSHZ2Q9NRE2 1034 aa9.71□□□□□ -0.85
TDP1-213ENST00000555880 CNTLNQ9NXG0 1405 aa9.7□□□□□ -0.86
TDP1-213ENST00000555880 L3MBTL2Q969R5 705 aa9.7□□□□□ -0.86
TDP1-213ENST00000555880 TROQ12816 1431 aaPredicted RBP9.7□□□□□ -0.86
TDP1-213ENST00000555880 ANKRD30BQ9BXX2 1392 aa9.7□□□□□ -0.86
TDP1-213ENST00000555880 POLR1AO95602 1720 aaPredicted RBP9.7□□□□□ -0.86
TDP1-213ENST00000555880 ADCY10Q96PN6 1610 aa9.69□□□□□ -0.86
TDP1-213ENST00000555880 CAMSAP2Q08AD1 1489 aa9.69□□□□□ -0.86
TDP1-213ENST00000555880 NUP160Q12769 1436 aa9.69□□□□□ -0.86
TDP1-213ENST00000555880 HNRNPUQ00839 825 aaKnown RBP eCLIP9.68□□□□□ -0.86
TDP1-213ENST00000555880 TEX14Q8IWB6 1497 aa9.68□□□□□ -0.86
TDP1-213ENST00000555880 CROCC2H7BZ55 1655 aa9.68□□□□□ -0.86
TDP1-213ENST00000555880 CEP170Q5SW79 1584 aa9.68□□□□□ -0.86
TDP1-213ENST00000555880 C19orf67A6NJJ6 358 aa9.68□□□□□ -0.86
TDP1-213ENST00000555880 CFDP1Q9UEE9 299 aaPredicted RBP9.68□□□□□ -0.86
TDP1-213ENST00000555880 NCOA1Q15788 1441 aa9.67□□□□□ -0.86
TDP1-213ENST00000555880 ZNF644Q9H582 1327 aaPredicted RBP9.67□□□□□ -0.86
TDP1-213ENST00000555880 CCDC7Q96M83 1385 aa9.67□□□□□ -0.86
TDP1-213ENST00000555880 PRG4Q92954 1404 aaPredicted RBP9.66□□□□□ -0.86
TDP1-213ENST00000555880 ADGRL2O95490 1459 aa9.65□□□□□ -0.86
TDP1-213ENST00000555880 GPATCH8Q9UKJ3 1502 aaKnown RBP9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms