RNA–Protein interactions for RNA: ENST00000555506.1

KTN1-222, Transcript of kinectin 1, human

TSL 1 (best)

Gene KTN1, Length 1,464 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KTN1-222	ENST00000555506	HOXB3	P14651	431 aa	Predicted RBP	10.72	□□□□□ -0.69
KTN1-222	ENST00000555506	VARS2	Q5ST30	1063 aa	Known RBP	10.72	□□□□□ -0.69
KTN1-222	ENST00000555506	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.71	□□□□□ -0.69
KTN1-222	ENST00000555506	STK25	O00506	426 aa		10.69	□□□□□ -0.7
KTN1-222	ENST00000555506	ZNF687	Q8N1G0	1237 aa		10.68	□□□□□ -0.7
KTN1-222	ENST00000555506	STK24	Q9Y6E0	443 aa		10.68	□□□□□ -0.7
KTN1-222	ENST00000555506	EFCAB3	Q8N7B9	438 aa		10.68	□□□□□ -0.7
KTN1-222	ENST00000555506	DCAF8L2	P0C7V8	631 aa		10.64	□□□□□ -0.71
KTN1-222	ENST00000555506	BOLA1	Q9Y3E2	137 aa		10.64	□□□□□ -0.71
KTN1-222	ENST00000555506	CHGA	P10645	457 aa	Known RBP	10.63	□□□□□ -0.71
KTN1-222	ENST00000555506	HS6ST3	Q8IZP7	471 aa		10.62	□□□□□ -0.71
KTN1-222	ENST00000555506	ZSWIM6	Q9HCJ5	1215 aa		10.61	□□□□□ -0.71
KTN1-222	ENST00000555506	ILDR1	Q86SU0	546 aa	Predicted RBP	10.61	□□□□□ -0.71
KTN1-222	ENST00000555506	ANKRD13D	Q6ZTN6	518 aa		10.6	□□□□□ -0.71
KTN1-222	ENST00000555506	SOX12	O15370	315 aa		10.58	□□□□□ -0.72
KTN1-222	ENST00000555506	PHF8	Q9UPP1	1060 aa		10.57	□□□□□ -0.72
KTN1-222	ENST00000555506	DPY19L2	Q6NUT2	758 aa		10.56	□□□□□ -0.72
KTN1-222	ENST00000555506	MFRP	Q9BY79	579 aa		10.55	□□□□□ -0.72
KTN1-222	ENST00000555506	IRX2	Q9BZI1	471 aa	Predicted RBP	10.55	□□□□□ -0.72
KTN1-222	ENST00000555506	MS4A4A	Q96JQ5	239 aa		10.54	□□□□□ -0.72
KTN1-222	ENST00000555506	HCST	Q9UBK5	93 aa		10.54	□□□□□ -0.72
KTN1-222	ENST00000555506	FBXO22	Q8NEZ5	403 aa		10.53	□□□□□ -0.72
KTN1-222	ENST00000555506	NKX1-1	Q15270	411 aa	Predicted RBP	10.52	□□□□□ -0.73
KTN1-222	ENST00000555506	DNAJC5	Q9H3Z4	198 aa		10.52	□□□□□ -0.73
KTN1-222	ENST00000555506	NLRP6	P59044	892 aa		10.5	□□□□□ -0.73
KTN1-222	ENST00000555506	RGS20	O76081	388 aa		10.49	□□□□□ -0.73
KTN1-222	ENST00000555506	PLCB2	Q00722	1185 aa		10.49	□□□□□ -0.73
KTN1-222	ENST00000555506	LSM11	P83369	360 aa	Known RBP eCLIP	10.47	□□□□□ -0.73
KTN1-222	ENST00000555506	GPR153	Q6NV75	609 aa		10.42	□□□□□ -0.74
KTN1-222	ENST00000555506	PPP1R37	O75864	691 aa		10.42	□□□□□ -0.74
KTN1-222	ENST00000555506	MICALL2	Q8IY33	904 aa		10.4	□□□□□ -0.74
KTN1-222	ENST00000555506	GTPBP6	O43824	516 aa	Predicted RBP	10.39	□□□□□ -0.75
KTN1-222	ENST00000555506	BBX	Q8WY36	941 aa	Predicted RBP	10.39	□□□□□ -0.75
KTN1-222	ENST00000555506	PBX2	P40425	430 aa		10.38	□□□□□ -0.75
KTN1-222	ENST00000555506	ZNF316	A6NFI3	1004 aa	Predicted RBP	10.36	□□□□□ -0.75
KTN1-222	ENST00000555506	ARSI	Q5FYB1	569 aa		10.33	□□□□□ -0.76
KTN1-222	ENST00000555506	RYDEN	Q9NUL5	291 aa	Known RBP	10.33	□□□□□ -0.76
KTN1-222	ENST00000555506	HAP1	P54257	671 aa	Predicted RBP	10.31	□□□□□ -0.76
KTN1-222	ENST00000555506	TMEM92	Q6UXU6	159 aa		10.31	□□□□□ -0.76
KTN1-222	ENST00000555506	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.29	□□□□□ -0.76
KTN1-222	ENST00000555506	SPRYD3	Q8NCJ5	442 aa		10.25	□□□□□ -0.77
KTN1-222	ENST00000555506	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	10.24	□□□□□ -0.77
KTN1-222	ENST00000555506	CFAP44	Q96MT7	982 aa		10.24	□□□□□ -0.77
KTN1-222	ENST00000555506	KIF3C	O14782	793 aa		10.22	□□□□□ -0.77
KTN1-222	ENST00000555506		Q6ZNB5	142 aa		10.22	□□□□□ -0.77
KTN1-222	ENST00000555506	C2orf72	A6NCS6	295 aa		10.2	□□□□□ -0.78
KTN1-222	ENST00000555506	IFFO2	Q5TF58	517 aa		10.19	□□□□□ -0.78
KTN1-222	ENST00000555506	ADGRD1	Q6QNK2	874 aa		10.19	□□□□□ -0.78
KTN1-222	ENST00000555506	VSIG10	Q8N0Z9	540 aa		10.19	□□□□□ -0.78
KTN1-222	ENST00000555506	STAC3	Q96MF2	364 aa		10.18	□□□□□ -0.78
KTN1-222	ENST00000555506	CADPS2	Q86UW7	1296 aa		10.17	□□□□□ -0.78
KTN1-222	ENST00000555506	TMC2	Q8TDI7	906 aa		10.17	□□□□□ -0.78
KTN1-222	ENST00000555506	KHSRP	Q92945	711 aa	Known RBP eCLIP	10.17	□□□□□ -0.78	9e-9	■■■■■ 27.2
KTN1-222	ENST00000555506	AXIN2	Q9Y2T1	843 aa		10.17	□□□□□ -0.78
KTN1-222	ENST00000555506	NCKAP5L	Q9HCH0	1330 aa		10.15	□□□□□ -0.78
KTN1-222	ENST00000555506	CRISPLD2	Q9H0B8	497 aa		10.14	□□□□□ -0.79
KTN1-222	ENST00000555506	GPHN	Q9NQX3	736 aa	Predicted RBP	10.14	□□□□□ -0.79
KTN1-222	ENST00000555506	ARHGAP33	O14559	1287 aa		10.13	□□□□□ -0.79
KTN1-222	ENST00000555506	TK2	O00142	265 aa		10.12	□□□□□ -0.79
KTN1-222	ENST00000555506		A0A0G2JS52	829 aa		10.1	□□□□□ -0.79
KTN1-222	ENST00000555506	KCTD12	Q96CX2	325 aa	Known RBP	10.1	□□□□□ -0.79
KTN1-222	ENST00000555506	PSD	A5PKW4	1024 aa	Predicted RBP	10.1	□□□□□ -0.79
KTN1-222	ENST00000555506	NUDT7	P0C024	238 aa		10.1	□□□□□ -0.79
KTN1-222	ENST00000555506	FOXK1	P85037	733 aa		10.1	□□□□□ -0.79
KTN1-222	ENST00000555506	DSG2	Q14126	1118 aa		10.1	□□□□□ -0.79
KTN1-222	ENST00000555506	PDE4A	P27815	886 aa		10.09	□□□□□ -0.79
KTN1-222	ENST00000555506	POTEE	Q6S8J3	1075 aa		10.09	□□□□□ -0.79
KTN1-222	ENST00000555506	LHX6	Q9UPM6	363 aa		10.09	□□□□□ -0.79
KTN1-222	ENST00000555506	PLPP6	Q8IY26	295 aa		10.07	□□□□□ -0.8
KTN1-222	ENST00000555506	LARP6	Q9BRS8	491 aa	Known RBP	10.07	□□□□□ -0.8
KTN1-222	ENST00000555506	BCAN	Q96GW7	911 aa		10.06	□□□□□ -0.8
KTN1-222	ENST00000555506	TSHZ2	Q9NRE2	1034 aa		10.06	□□□□□ -0.8
KTN1-222	ENST00000555506	KDM2A	Q9Y2K7	1162 aa		10.05	□□□□□ -0.8
KTN1-222	ENST00000555506	PPP1R15B	Q5SWA1	713 aa		10.04	□□□□□ -0.8
KTN1-222	ENST00000555506	MFSD10	Q14728	455 aa		10.04	□□□□□ -0.8
KTN1-222	ENST00000555506	DDX27	Q96GQ7	796 aa	Known RBP	10.04	□□□□□ -0.8
KTN1-222	ENST00000555506	HR	O43593	1189 aa		10.03	□□□□□ -0.8
KTN1-222	ENST00000555506	SLC34A2	O95436	690 aa		10	□□□□□ -0.81
KTN1-222	ENST00000555506	PTPN5	P54829	565 aa		9.99	□□□□□ -0.81
KTN1-222	ENST00000555506	PCDHGA4	Q9Y5G9	962 aa		9.98	□□□□□ -0.81
KTN1-222	ENST00000555506	KCNH8	Q96L42	1107 aa		9.97	□□□□□ -0.81
KTN1-222	ENST00000555506	TRAF7	Q6Q0C0	670 aa		9.96	□□□□□ -0.82
KTN1-222	ENST00000555506	PTCD2	Q8WV60	388 aa	Known RBP	9.96	□□□□□ -0.82
KTN1-222	ENST00000555506	LCE2B	O14633	110 aa		9.95	□□□□□ -0.82
KTN1-222	ENST00000555506	LAPTM4A	Q15012	233 aa		9.94	□□□□□ -0.82
KTN1-222	ENST00000555506	OXER1	Q8TDS5	423 aa		9.94	□□□□□ -0.82
KTN1-222	ENST00000555506	UPF1	Q92900	1129 aa	Known RBP eCLIP	9.94	□□□□□ -0.82
KTN1-222	ENST00000555506	LOC100996750	A0A140TA64	210 aa		9.93	□□□□□ -0.82
KTN1-222	ENST00000555506	KRTAP4-6	Q9BYQ5	205 aa		9.93	□□□□□ -0.82
KTN1-222	ENST00000555506	EMILIN3	Q9NT22	766 aa		9.93	□□□□□ -0.82
KTN1-222	ENST00000555506	DMRTA1	Q5VZB9	504 aa		9.92	□□□□□ -0.82
KTN1-222	ENST00000555506	CAMK2B	Q13554	666 aa		9.91	□□□□□ -0.82
KTN1-222	ENST00000555506	KDM4F	A0A1W2PPD8	638 aa		9.9	□□□□□ -0.83
KTN1-222	ENST00000555506	PSEN2	P49810	448 aa		9.9	□□□□□ -0.83
KTN1-222	ENST00000555506	WDR70	Q9NW82	654 aa		9.9	□□□□□ -0.83
KTN1-222	ENST00000555506	PPP4R3B	Q5MIZ7	849 aa		9.88	□□□□□ -0.83
KTN1-222	ENST00000555506	TBC1D12	O60347	775 aa		9.87	□□□□□ -0.83
KTN1-222	ENST00000555506	GOLGA8CP	A6NN73	597 aa		9.85	□□□□□ -0.83
KTN1-222	ENST00000555506	E2F4	Q16254	413 aa		9.85	□□□□□ -0.83
KTN1-222	ENST00000555506	MAP3K9	P80192	1104 aa		9.84	□□□□□ -0.83

Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms