RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 ADGRL1O94910 1474 aa17.01■□□□□ 0.31
SHMT2-213ENST00000554600 PREX2Q70Z35 1606 aa17.01■□□□□ 0.31
SHMT2-213ENST00000554600 EFCAB2Q5VUJ9 269 aa17.01■□□□□ 0.31
SHMT2-213ENST00000554600 MTUS2Q5JR59 1369 aa16.98■□□□□ 0.31
SHMT2-213ENST00000554600 SCAPERQ9BY12 1400 aa16.97■□□□□ 0.31
SHMT2-213ENST00000554600 ARHGEF40Q8TER5 1519 aa16.95■□□□□ 0.3
SHMT2-213ENST00000554600 ZMYM4Q5VZL5 1548 aa16.93■□□□□ 0.3
SHMT2-213ENST00000554600 EHBP1L1Q8N3D4 1523 aa16.93■□□□□ 0.3
SHMT2-213ENST00000554600 POGZQ7Z3K3 1410 aa16.93■□□□□ 0.3
SHMT2-213ENST00000554600 ARID4BQ4LE39 1312 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-213ENST00000554600 ZFYVE16Q7Z3T8 1539 aa16.92■□□□□ 0.3
SHMT2-213ENST00000554600 ITSN2Q9NZM3 1697 aa16.92■□□□□ 0.3
SHMT2-213ENST00000554600 VPS8Q8N3P4 1428 aa16.92■□□□□ 0.3
SHMT2-213ENST00000554600 MYT1LQ9UL68 1186 aa16.91■□□□□ 0.3
SHMT2-213ENST00000554600 ZNF777Q9ULD5 760 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-213ENST00000554600 TIAM1Q13009 1591 aa16.9■□□□□ 0.3
SHMT2-213ENST00000554600 SUPT6HQ7KZ85 1726 aaKnown RBP16.9■□□□□ 0.3
SHMT2-213ENST00000554600 CCNB3Q8WWL7 1395 aa16.89■□□□□ 0.3
SHMT2-213ENST00000554600 ZNF518AQ6AHZ1 1483 aa16.88■□□□□ 0.29
SHMT2-213ENST00000554600 ABCC1P33527 1531 aa16.88■□□□□ 0.29
SHMT2-213ENST00000554600 YEATS2Q9ULM3 1422 aa16.87■□□□□ 0.29
SHMT2-213ENST00000554600 BCORL1Q5H9F3 1711 aa16.87■□□□□ 0.29
SHMT2-213ENST00000554600 MAGI2Q86UL8 1455 aa16.87■□□□□ 0.29
SHMT2-213ENST00000554600 GPATCH8Q9UKJ3 1502 aaKnown RBP16.87■□□□□ 0.29
SHMT2-213ENST00000554600 SAMD9LQ8IVG5 1584 aa16.86■□□□□ 0.29
SHMT2-213ENST00000554600 HECW2Q9P2P5 1572 aa16.86■□□□□ 0.29
SHMT2-213ENST00000554600 AFAP1Q8N556 730 aa16.85■□□□□ 0.29
SHMT2-213ENST00000554600 CFDP1Q9UEE9 299 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-213ENST00000554600 KDM5CP41229 1560 aa16.85■□□□□ 0.29
SHMT2-213ENST00000554600 ADAMTSL3P82987 1691 aa16.85■□□□□ 0.29
SHMT2-213ENST00000554600 FBXO41Q8TF61 875 aa16.84■□□□□ 0.29
SHMT2-213ENST00000554600 SIGLEC1Q9BZZ2 1709 aa16.84■□□□□ 0.29
SHMT2-213ENST00000554600 SYCP2Q9BX26 1530 aa16.83■□□□□ 0.28
SHMT2-213ENST00000554600 ARHGEF12Q9NZN5 1544 aa16.83■□□□□ 0.28
SHMT2-213ENST00000554600 MADDQ8WXG6 1647 aa16.82■□□□□ 0.28
SHMT2-213ENST00000554600 TRAPPC8Q9Y2L5 1435 aa16.82■□□□□ 0.28
SHMT2-213ENST00000554600 RIMS1Q86UR5 1692 aaKnown RBP16.81■□□□□ 0.28
SHMT2-213ENST00000554600 ATP10AO60312 1499 aa16.81■□□□□ 0.28
SHMT2-213ENST00000554600 NCOA2Q15596 1464 aa16.81■□□□□ 0.28
SHMT2-213ENST00000554600 APLP2Q06481 763 aa16.81■□□□□ 0.28
SHMT2-213ENST00000554600 FER1L4A9Z1Z3 1794 aa16.8■□□□□ 0.28
SHMT2-213ENST00000554600 ABCA6Q8N139 1617 aa16.8■□□□□ 0.28
SHMT2-213ENST00000554600 LRRC9Q6ZRR7 1453 aa16.8■□□□□ 0.28
SHMT2-213ENST00000554600 PLEKHH2Q8IVE3 1493 aa16.8■□□□□ 0.28
SHMT2-213ENST00000554600 KIDINS220Q9ULH0 1771 aa16.79■□□□□ 0.28
SHMT2-213ENST00000554600 HNRNPMP52272 730 aaKnown RBP eCLIP16.79■□□□□ 0.28
SHMT2-213ENST00000554600 MLECQ14165 292 aa16.79■□□□□ 0.28
SHMT2-213ENST00000554600 DIP2CQ9Y2E4 1556 aa16.79■□□□□ 0.28
SHMT2-213ENST00000554600 C9orf84Q5VXU9 1444 aa16.79■□□□□ 0.28
SHMT2-213ENST00000554600 MAP3K1Q13233 1512 aa16.76■□□□□ 0.27
SHMT2-213ENST00000554600 MLH3Q9UHC1 1453 aa16.76■□□□□ 0.27
SHMT2-213ENST00000554600 ZNF644Q9H582 1327 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-213ENST00000554600 KANK4Q5T7N3 995 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-213ENST00000554600 PLPPR3Q6T4P5 718 aa16.74■□□□□ 0.27
SHMT2-213ENST00000554600 PTPRMP28827 1452 aa16.73■□□□□ 0.27
SHMT2-213ENST00000554600 SPAG9O60271 1321 aaKnown RBP16.73■□□□□ 0.27
SHMT2-213ENST00000554600 KIAA1107Q9UPP5 1409 aa16.73■□□□□ 0.27
SHMT2-213ENST00000554600 ATP7AQ04656 1500 aa16.72■□□□□ 0.27
SHMT2-213ENST00000554600 CAMSAP2Q08AD1 1489 aa16.72■□□□□ 0.27
SHMT2-213ENST00000554600 REREQ9P2R6 1566 aa16.71■□□□□ 0.27
SHMT2-213ENST00000554600 INO80Q9ULG1 1556 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-213ENST00000554600 ADGBQ8N7X0 1667 aa16.69■□□□□ 0.26
SHMT2-213ENST00000554600 CCDC141Q6ZP82 1450 aa16.66■□□□□ 0.26
SHMT2-213ENST00000554600 MBD5Q9P267 1494 aa16.66■□□□□ 0.26
SHMT2-213ENST00000554600 MYOM3Q5VTT5 1437 aa16.65■□□□□ 0.26
SHMT2-213ENST00000554600 AGLP35573 1532 aa16.65■□□□□ 0.26
SHMT2-213ENST00000554600 ESF1Q9H501 851 aaKnown RBP16.64■□□□□ 0.25
SHMT2-213ENST00000554600 ARHGEF5Q12774 1597 aa16.64■□□□□ 0.25
SHMT2-213ENST00000554600 A2MP01023 1474 aa16.62■□□□□ 0.25
SHMT2-213ENST00000554600 SETD1BQ9UPS6 1966 aaKnown RBP16.6■□□□□ 0.25
SHMT2-213ENST00000554600 PTPN23Q9H3S7 1636 aa16.6■□□□□ 0.25
SHMT2-213ENST00000554600 C3P01024 1663 aa16.6■□□□□ 0.25
SHMT2-213ENST00000554600 RSPH4AQ5TD94 716 aa16.6■□□□□ 0.25
SHMT2-213ENST00000554600 MIA2Q96PC5 1412 aa16.6■□□□□ 0.25
SHMT2-213ENST00000554600 PLXNC1O60486 1568 aa16.6■□□□□ 0.25
SHMT2-213ENST00000554600 TSPY4P0CV99 314 aa16.59■□□□□ 0.25
SHMT2-213ENST00000554600 TSPY10P0CW01 314 aa16.59■□□□□ 0.25
SHMT2-213ENST00000554600 RTEL1-TNFRSF6BF6WH68 1400 aa16.59■□□□□ 0.25
SHMT2-213ENST00000554600 CLTCQ00610 1675 aaKnown RBP16.58■□□□□ 0.24
SHMT2-213ENST00000554600 PREX1Q8TCU6 1659 aa16.57■□□□□ 0.24
SHMT2-213ENST00000554600 CEBPAP49715 358 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-213ENST00000554600 CROCC2H7BZ55 1655 aa16.56■□□□□ 0.24
SHMT2-213ENST00000554600 GGT6Q6P531 493 aa16.55■□□□□ 0.24
SHMT2-213ENST00000554600 MROH2AA6NES4 1674 aa16.55■□□□□ 0.24
SHMT2-213ENST00000554600 LMTK3Q96Q04 1460 aa16.54■□□□□ 0.24
SHMT2-213ENST00000554600 FGD6Q6ZV73 1430 aa16.54■□□□□ 0.24
SHMT2-213ENST00000554600 MAST1Q9Y2H9 1570 aa16.54■□□□□ 0.24
SHMT2-213ENST00000554600 CNTLNQ9NXG0 1405 aa16.53■□□□□ 0.24
SHMT2-213ENST00000554600 DHX29Q7Z478 1369 aaKnown RBP16.52■□□□□ 0.24
SHMT2-213ENST00000554600 DNMT1P26358 1616 aaKnown RBP16.52■□□□□ 0.23
SHMT2-213ENST00000554600 KIF3BO15066 747 aa16.5■□□□□ 0.23
SHMT2-213ENST00000554600 PPARGC1BQ86YN6 1023 aaKnown RBP16.49■□□□□ 0.23
SHMT2-213ENST00000554600 CFAP65Q6ZU64 1925 aaKnown RBP16.49■□□□□ 0.23
SHMT2-213ENST00000554600 TCOF1Q13428 1488 aaKnown RBP16.48■□□□□ 0.23
SHMT2-213ENST00000554600 HSPA2P54652 639 aa16.48■□□□□ 0.23
SHMT2-213ENST00000554600 FAM50AQ14320 339 aaKnown RBP16.48■□□□□ 0.23
SHMT2-213ENST00000554600 ABCC5O15440 1437 aa16.46■□□□□ 0.23
SHMT2-213ENST00000554600 DAPK1P53355 1430 aa16.46■□□□□ 0.23
SHMT2-213ENST00000554600 SOCS7O14512 581 aa16.46■□□□□ 0.23
SHMT2-213ENST00000554600 ZMYM3Q14202 1370 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms