RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 NISCHQ9Y2I1 1504 aa26■■□□□ 1.75
SHMT2-213ENST00000554600 CCDC180Q9P1Z9 1646 aa23.25■■□□□ 1.31
SHMT2-213ENST00000554600 ABCC9O60706 1549 aa22.87■■□□□ 1.25
SHMT2-213ENST00000554600 RB1CC1Q8TDY2 1594 aa21.93■■□□□ 1.1
SHMT2-213ENST00000554600 DCAF8L2P0C7V8 631 aa21.89■■□□□ 1.09
SHMT2-213ENST00000554600 NACADO15069 1562 aa21.83■■□□□ 1.09
SHMT2-213ENST00000554600 ZCCHC6Q5VYS8 1495 aaKnown RBP21.62■■□□□ 1.05
SHMT2-213ENST00000554600 MYO15BQ96JP2 1530 aa21.58■■□□□ 1.04
SHMT2-213ENST00000554600 UNC13AQ9UPW8 1703 aa21.55■■□□□ 1.04
SHMT2-213ENST00000554600 DNAJC5BQ9UF47 199 aa21.53■■□□□ 1.04
SHMT2-213ENST00000554600 DCAF1Q9Y4B6 1507 aa21.46■■□□□ 1.03
SHMT2-213ENST00000554600 PABPN1Q86U42 306 aaKnown RBP eCLIP21.32■■□□□ 1
SHMT2-213ENST00000554600 BICRAQ9NZM4 1560 aa21.23■□□□□ 0.99
SHMT2-213ENST00000554600 SCRIBQ14160 1630 aa21.23■□□□□ 0.99
SHMT2-213ENST00000554600 SHROOM4Q9ULL8 1493 aa20.94■□□□□ 0.94
SHMT2-213ENST00000554600 EIF4G1Q04637 1599 aaKnown RBP20.7■□□□□ 0.9
SHMT2-213ENST00000554600 CC2D2AQ9P2K1 1620 aa20.68■□□□□ 0.9
SHMT2-213ENST00000554600 CECR2Q9BXF3 1484 aa20.53■□□□□ 0.88
SHMT2-213ENST00000554600 DNAJC5Q9H3Z4 198 aa20.34■□□□□ 0.85
SHMT2-213ENST00000554600 SMARCA4P51532 1647 aa20.26■□□□□ 0.83
SHMT2-213ENST00000554600 BAZ1AQ9NRL2 1556 aaPredicted RBP20.19■□□□□ 0.82
SHMT2-213ENST00000554600 SMARCA2P51531 1590 aa20.13■□□□□ 0.81
SHMT2-213ENST00000554600 ATAD2BQ9ULI0 1458 aa20.11■□□□□ 0.81
SHMT2-213ENST00000554600 NCAPD3P42695 1498 aa20.1■□□□□ 0.81
SHMT2-213ENST00000554600 MROH2BQ7Z745 1585 aa20.06■□□□□ 0.8
SHMT2-213ENST00000554600 HMGXB3Q12766 1538 aa20.03■□□□□ 0.8
SHMT2-213ENST00000554600 BAZ1BQ9UIG0 1483 aaKnown RBP20■□□□□ 0.79
SHMT2-213ENST00000554600 PEG3Q9GZU2 1588 aa19.99■□□□□ 0.79
SHMT2-213ENST00000554600 WIZO95785 1651 aa19.91■□□□□ 0.78
SHMT2-213ENST00000554600 RSF1Q96T23 1441 aaPredicted RBP19.75■□□□□ 0.75
SHMT2-213ENST00000554600 ERCC6Q03468 1493 aa19.74■□□□□ 0.75
SHMT2-213ENST00000554600 NESP48681 1621 aa19.73■□□□□ 0.75
SHMT2-213ENST00000554600 LAMC3Q9Y6N6 1575 aa19.66■□□□□ 0.74
SHMT2-213ENST00000554600 TOP2AP11388 1531 aaKnown RBP19.62■□□□□ 0.73
SHMT2-213ENST00000554600 KIF21AQ7Z4S6 1674 aa19.59■□□□□ 0.73
SHMT2-213ENST00000554600 CADPSQ9ULU8 1353 aa19.52■□□□□ 0.72
SHMT2-213ENST00000554600 PDS5BQ9NTI5 1447 aa19.51■□□□□ 0.71
SHMT2-213ENST00000554600 CUX2O14529 1486 aa19.5■□□□□ 0.71
SHMT2-213ENST00000554600 THOC2Q8NI27 1593 aaKnown RBP19.47■□□□□ 0.71
SHMT2-213ENST00000554600 PRDM2Q13029 1718 aa19.41■□□□□ 0.7
SHMT2-213ENST00000554600 CFTRP13569 1480 aa19.38■□□□□ 0.69
SHMT2-213ENST00000554600 CCDC88BA6NC98 1476 aa19.37■□□□□ 0.69
SHMT2-213ENST00000554600 CEP164Q9UPV0 1460 aa19.35■□□□□ 0.69
SHMT2-213ENST00000554600 FANCD2Q9BXW9 1451 aa19.34■□□□□ 0.69
SHMT2-213ENST00000554600 MRC2Q9UBG0 1479 aa19.33■□□□□ 0.68
SHMT2-213ENST00000554600 WDR62O43379 1518 aa19.26■□□□□ 0.67
SHMT2-213ENST00000554600 SUPT5HO00267 1087 aaKnown RBP19.26■□□□□ 0.67
SHMT2-213ENST00000554600 URB2Q14146 1524 aaKnown RBP19.15■□□□□ 0.66
SHMT2-213ENST00000554600 TRIM41Q8WV44 630 aa19.05■□□□□ 0.64
SHMT2-213ENST00000554600 TOPBP1Q92547 1522 aa19.02■□□□□ 0.64
SHMT2-213ENST00000554600 DNMBPQ6XZF7 1577 aa19.01■□□□□ 0.63
SHMT2-213ENST00000554600 ABCC8Q09428 1581 aa19■□□□□ 0.63
SHMT2-213ENST00000554600 IFT140Q96RY7 1462 aa18.92■□□□□ 0.62
SHMT2-213ENST00000554600 ZNF608Q9ULD9 1512 aaPredicted RBP18.85■□□□□ 0.61
SHMT2-213ENST00000554600 POLA1P09884 1462 aaPredicted RBP18.84■□□□□ 0.61
SHMT2-213ENST00000554600 TARBP1Q13395 1621 aaKnown RBP18.84■□□□□ 0.61
SHMT2-213ENST00000554600 EIF4G3O43432 1585 aaKnown RBP18.83■□□□□ 0.6
SHMT2-213ENST00000554600 CUX1P39880 1505 aa18.83■□□□□ 0.6
SHMT2-213ENST00000554600 FGD5Q6ZNL6 1462 aa18.8■□□□□ 0.6
SHMT2-213ENST00000554600 RAD54L2Q9Y4B4 1467 aa18.77■□□□□ 0.6
SHMT2-213ENST00000554600 SOGA1O94964 1423 aa18.76■□□□□ 0.59
SHMT2-213ENST00000554600 AQRO60306 1485 aaKnown RBP eCLIP18.74■□□□□ 0.593e-7■■■■□ 25.7
SHMT2-213ENST00000554600 CHD1O14646 1710 aa18.69■□□□□ 0.58
SHMT2-213ENST00000554600 OSCARQ8IYS5 282 aa18.69■□□□□ 0.58
SHMT2-213ENST00000554600 WDR97A6NE52 1622 aa18.69■□□□□ 0.58
SHMT2-213ENST00000554600 TDRD9Q8NDG6 1382 aaKnown RBP18.68■□□□□ 0.58
SHMT2-213ENST00000554600 BIVM-ERCC5R4GMW8 1640 aa18.67■□□□□ 0.58
SHMT2-213ENST00000554600 WRNQ14191 1432 aaPredicted RBP eCLIP18.66■□□□□ 0.58
SHMT2-213ENST00000554600 SYNJ1O43426 1573 aa18.65■□□□□ 0.58
SHMT2-213ENST00000554600 TOP2BQ02880 1626 aa18.65■□□□□ 0.58
SHMT2-213ENST00000554600 PBRM1Q86U86 1689 aa18.63■□□□□ 0.57
SHMT2-213ENST00000554600 FBLN2P98095 1184 aa18.61■□□□□ 0.57
SHMT2-213ENST00000554600 SNAPC4Q5SXM2 1469 aa18.58■□□□□ 0.56
SHMT2-213ENST00000554600 ABCA10Q8WWZ4 1543 aa18.57■□□□□ 0.56
SHMT2-213ENST00000554600 GRIN2BQ13224 1484 aa18.57■□□□□ 0.56
SHMT2-213ENST00000554600 GAPVD1Q14C86 1478 aa18.56■□□□□ 0.56
SHMT2-213ENST00000554600 ABCA5Q8WWZ7 1642 aa18.56■□□□□ 0.56
SHMT2-213ENST00000554600 MAGI1Q96QZ7 1491 aaPredicted RBP18.52■□□□□ 0.56
SHMT2-213ENST00000554600 CHMP7Q8WUX9 453 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-213ENST00000554600 RIMBP3CA6NJZ7 1639 aa18.46■□□□□ 0.55
SHMT2-213ENST00000554600 RIMBP3BA6NNM3 1639 aa18.46■□□□□ 0.55
SHMT2-213ENST00000554600 RIMBP3Q9UFD9 1639 aa18.46■□□□□ 0.55
SHMT2-213ENST00000554600 SYNJ2O15056 1496 aa18.46■□□□□ 0.54
SHMT2-213ENST00000554600 ARHGEF11O15085 1522 aa18.4■□□□□ 0.54
SHMT2-213ENST00000554600 ADAMTS12P58397 1594 aa18.39■□□□□ 0.53
SHMT2-213ENST00000554600 ERICH3Q5RHP9 1530 aa18.36■□□□□ 0.53
SHMT2-213ENST00000554600 CLASP1Q7Z460 1538 aa18.35■□□□□ 0.53
SHMT2-213ENST00000554600 GRIN2AQ12879 1464 aa18.33■□□□□ 0.52
SHMT2-213ENST00000554600 FHAD1B1AJZ9 1412 aa18.32■□□□□ 0.52
SHMT2-213ENST00000554600 KIF27Q86VH2 1401 aa18.28■□□□□ 0.52
SHMT2-213ENST00000554600 CEP170Q5SW79 1584 aa18.26■□□□□ 0.51
SHMT2-213ENST00000554600 CYB5RLQ6IPT4 315 aa18.26■□□□□ 0.51
SHMT2-213ENST00000554600 CUL7Q14999 1698 aa18.24■□□□□ 0.51
SHMT2-213ENST00000554600 ARAP1Q96P48 1450 aa18.23■□□□□ 0.51
SHMT2-213ENST00000554600 NUP160Q12769 1436 aa18.21■□□□□ 0.51
SHMT2-213ENST00000554600 IGF1RP08069 1367 aa18.17■□□□□ 0.5
SHMT2-213ENST00000554600 SHROOM2Q13796 1616 aa18.14■□□□□ 0.49
SHMT2-213ENST00000554600 RUSC2Q8N2Y8 1516 aa18.13■□□□□ 0.49
SHMT2-213ENST00000554600 ERCC6L2Q5T890 1561 aa18.13■□□□□ 0.49
SHMT2-213ENST00000554600 AEBP2Q6ZN18 517 aaPredicted RBP18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms