RNA–Protein interactions for RNA: ENST00000553508.5

PCNX1-205, Transcript of pecanex 1, humanhuman

TSL 3

Gene PCNX1, Length 645 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX1-205ENST00000553508 CADPS2Q86UW7 1296 aa17.51■□□□□ 0.39
PCNX1-205ENST00000553508 TMC2Q8TDI7 906 aa17.51■□□□□ 0.39
PCNX1-205ENST00000553508 C2orf72A6NCS6 295 aa17.5■□□□□ 0.39
PCNX1-205ENST00000553508 TSHZ2Q9NRE2 1034 aa17.47■□□□□ 0.39
PCNX1-205ENST00000553508 KIF3CO14782 793 aa17.42■□□□□ 0.38
PCNX1-205ENST00000553508 GPHNQ9NQX3 736 aaPredicted RBP17.41■□□□□ 0.38
PCNX1-205ENST00000553508 NCKAP5LQ9HCH0 1330 aa17.41■□□□□ 0.38
PCNX1-205ENST00000553508 PDE4AP27815 886 aa17.4■□□□□ 0.38
PCNX1-205ENST00000553508 HAP1P54257 671 aaPredicted RBP17.4■□□□□ 0.38
PCNX1-205ENST00000553508 LARP6Q9BRS8 491 aaKnown RBP17.39■□□□□ 0.37
PCNX1-205ENST00000553508 CRISPLD2Q9H0B8 497 aa17.39■□□□□ 0.37
PCNX1-205ENST00000553508 DSG2Q14126 1118 aa17.34■□□□□ 0.37
PCNX1-205ENST00000553508 SNPHO15079 494 aa17.33■□□□□ 0.36
PCNX1-205ENST00000553508 FAM163AQ96GL9 167 aaPredicted RBP17.33■□□□□ 0.36
PCNX1-205ENST00000553508 PLPP6Q8IY26 295 aa17.32■□□□□ 0.36
PCNX1-205ENST00000553508 FOXK1P85037 733 aa17.31■□□□□ 0.36
PCNX1-205ENST00000553508 DDX27Q96GQ7 796 aaKnown RBP17.29■□□□□ 0.36
PCNX1-205ENST00000553508 HOXB3P14651 431 aaPredicted RBP17.28■□□□□ 0.36
PCNX1-205ENST00000553508 PPP1R15BQ5SWA1 713 aa17.28■□□□□ 0.36
PCNX1-205ENST00000553508 DOK7Q18PE1 504 aa17.25■□□□□ 0.35
PCNX1-205ENST00000553508 ZNF710Q8N1W2 664 aa17.23■□□□□ 0.35
PCNX1-205ENST00000553508 MFSD10Q14728 455 aa17.22■□□□□ 0.35
PCNX1-205ENST00000553508 WDR70Q9NW82 654 aa17.21■□□□□ 0.35
PCNX1-205ENST00000553508 ST18O60284 1047 aa17.2■□□□□ 0.34
PCNX1-205ENST00000553508 RIMBP2O15034 1052 aa17.17■□□□□ 0.34
PCNX1-205ENST00000553508 UPF1Q92900 1129 aaKnown RBP eCLIP17.15■□□□□ 0.34
PCNX1-205ENST00000553508 LCE2DQ5TA82 110 aaPredicted RBP17.13■□□□□ 0.33
PCNX1-205ENST00000553508 ARSIQ5FYB1 569 aa17.12■□□□□ 0.33
PCNX1-205ENST00000553508 SLC34A2O95436 690 aa17.1■□□□□ 0.33
PCNX1-205ENST00000553508 KHSRPQ92945 711 aaKnown RBP eCLIP17.1■□□□□ 0.33
PCNX1-205ENST00000553508 PCDHGA4Q9Y5G9 962 aa17.09■□□□□ 0.33
PCNX1-205ENST00000553508 GPR153Q6NV75 609 aa17.07■□□□□ 0.32
PCNX1-205ENST00000553508 MARVELD3Q96A59 401 aa17.07■□□□□ 0.32
PCNX1-205ENST00000553508 ZSWIM6Q9HCJ5 1215 aa17.06■□□□□ 0.32
PCNX1-205ENST00000553508 EMILIN3Q9NT22 766 aa17.06■□□□□ 0.32
PCNX1-205ENST00000553508 KDM2AQ9Y2K7 1162 aa17.06■□□□□ 0.32
PCNX1-205ENST00000553508 PTCD2Q8WV60 388 aaKnown RBP17.05■□□□□ 0.32
PCNX1-205ENST00000553508 HOXB1P14653 301 aaPredicted RBP17.04■□□□□ 0.32
PCNX1-205ENST00000553508 E2F4Q16254 413 aa17.04■□□□□ 0.32
PCNX1-205ENST00000553508 OXER1Q8TDS5 423 aa17.03■□□□□ 0.32
PCNX1-205ENST00000553508 TBC1D12O60347 775 aa17.02■□□□□ 0.32
PCNX1-205ENST00000553508 CAMK2BQ13554 666 aa17.02■□□□□ 0.32
PCNX1-205ENST00000553508 NUDT7P0C024 238 aa17.01■□□□□ 0.31
PCNX1-205ENST00000553508 MAP3K9P80192 1104 aa17■□□□□ 0.31
PCNX1-205ENST00000553508 EMP3P54852 163 aa16.99■□□□□ 0.31
PCNX1-205ENST00000553508 VSIG10Q8N0Z9 540 aa16.99■□□□□ 0.31
PCNX1-205ENST00000553508 DPYSL4O14531 572 aa16.95■□□□□ 0.3
PCNX1-205ENST00000553508 POTEMA6NI47 508 aa16.92■□□□□ 0.3
PCNX1-205ENST00000553508 POTEGQ6S5H5 508 aa16.92■□□□□ 0.3
PCNX1-205ENST00000553508 FAM205CA6NFA0 338 aa16.91■□□□□ 0.3
PCNX1-205ENST00000553508 KCNV2Q8TDN2 545 aa16.9■□□□□ 0.3
PCNX1-205ENST00000553508 ERBB3P21860 1342 aa16.9■□□□□ 0.3
PCNX1-205ENST00000553508 EVI5O60447 810 aa16.89■□□□□ 0.29
PCNX1-205ENST00000553508 LHX6Q9UPM6 363 aa16.87■□□□□ 0.29
PCNX1-205ENST00000553508 ZNF316A6NFI3 1004 aaPredicted RBP16.85■□□□□ 0.29
PCNX1-205ENST00000553508 KDM4FA0A1W2PPD8 638 aa16.84■□□□□ 0.29
PCNX1-205ENST00000553508 VARS2Q5ST30 1063 aaKnown RBP16.83■□□□□ 0.28
PCNX1-205ENST00000553508 P3H3Q8IVL6 736 aa16.82■□□□□ 0.28
PCNX1-205ENST00000553508 HS3ST6Q96QI5 342 aa16.82■□□□□ 0.28
PCNX1-205ENST00000553508 POTEB3A0JP26 581 aa16.81■□□□□ 0.28
PCNX1-205ENST00000553508 SLC24A1O60721 1099 aa16.81■□□□□ 0.28
PCNX1-205ENST00000553508 POTEBQ6S5H4 581 aa16.81■□□□□ 0.28
PCNX1-205ENST00000553508 ARHGEF1Q92888 912 aaKnown RBP16.78■□□□□ 0.28
PCNX1-205ENST00000553508 ANO8Q9HCE9 1232 aaPredicted RBP16.77■□□□□ 0.28
PCNX1-205ENST00000553508 ARIH1Q9Y4X5 557 aaPredicted RBP16.77■□□□□ 0.28
PCNX1-205ENST00000553508 PDIA6Q15084 440 aa16.74■□□□□ 0.27
PCNX1-205ENST00000553508 SPDYE16A6NNV3 312 aaPredicted RBP16.73■□□□□ 0.27
PCNX1-205ENST00000553508 ZNF454Q8N9F8 522 aa16.72■□□□□ 0.27
PCNX1-205ENST00000553508 DDX12PQ92771 950 aa16.71■□□□□ 0.27
PCNX1-205ENST00000553508 CDAN1Q8IWY9 1227 aa16.68■□□□□ 0.26
PCNX1-205ENST00000553508 PPP4R3BQ5MIZ7 849 aa16.67■□□□□ 0.26
PCNX1-205ENST00000553508 PSDA5PKW4 1024 aaPredicted RBP16.66■□□□□ 0.26
PCNX1-205ENST00000553508 GRXCR2A6NFK2 248 aa16.65■□□□□ 0.26
PCNX1-205ENST00000553508 FOSBP53539 338 aa16.65■□□□□ 0.26
PCNX1-205ENST00000553508 ZNF687Q8N1G0 1237 aa16.64■□□□□ 0.25
PCNX1-205ENST00000553508 JPH4Q96JJ6 628 aa16.63■□□□□ 0.25
PCNX1-205ENST00000553508 PCDHGA10Q9Y5H3 936 aa16.63■□□□□ 0.25
PCNX1-205ENST00000553508 PTGER2P43116 358 aa16.61■□□□□ 0.25
PCNX1-205ENST00000553508 SEMA3EO15041 775 aa16.6■□□□□ 0.25
PCNX1-205ENST00000553508 PHF14O94880 888 aa16.6■□□□□ 0.25
PCNX1-205ENST00000553508 ZDHHC16Q969W1 377 aa16.59■□□□□ 0.25
PCNX1-205ENST00000553508 AXIN2Q9Y2T1 843 aa16.59■□□□□ 0.25
PCNX1-205ENST00000553508 MLLT3P42568 568 aaPredicted RBP16.58■□□□□ 0.24
PCNX1-205ENST00000553508 NBR1Q14596 966 aa16.58■□□□□ 0.24
PCNX1-205ENST00000553508 RBM33Q96EV2 1170 aaKnown RBP16.56■□□□□ 0.24
PCNX1-205ENST00000553508 ADAM33Q9BZ11 813 aa16.56■□□□□ 0.24
PCNX1-205ENST00000553508 TYW1BQ6NUM6 668 aa16.55■□□□□ 0.24
PCNX1-205ENST00000553508 POTEEQ6S8J3 1075 aa16.55■□□□□ 0.24
PCNX1-205ENST00000553508 EPAS1Q99814 870 aa16.54■□□□□ 0.24
PCNX1-205ENST00000553508 PSEN2P49810 448 aa16.51■□□□□ 0.23
PCNX1-205ENST00000553508 FBXW7Q969H0 707 aa16.51■□□□□ 0.23
PCNX1-205ENST00000553508 KCNK17Q96T54 332 aa16.51■□□□□ 0.23
PCNX1-205ENST00000553508 KRTAP3-3Q9BYR6 98 aa16.51■□□□□ 0.23
PCNX1-205ENST00000553508 KRTAP3-2Q9BYR7 98 aa16.51■□□□□ 0.23
PCNX1-205ENST00000553508 BCL2L12Q9HB09 334 aa16.49■□□□□ 0.23
PCNX1-205ENST00000553508 ARHGAP33O14559 1287 aa16.48■□□□□ 0.23
PCNX1-205ENST00000553508 PCDH10Q9P2E7 1040 aa16.48■□□□□ 0.23
PCNX1-205ENST00000553508 MAP3K7O43318 606 aa16.47■□□□□ 0.23
PCNX1-205ENST00000553508 OSBPP22059 807 aa16.47■□□□□ 0.23
PCNX1-205ENST00000553508 PRIM1P49642 420 aaKnown RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms