RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 CLCN6P51797 869 aa10.71□□□□□ -0.69
SCFD1-208ENST00000553278 KIF12Q96FN5 646 aa10.7□□□□□ -0.7
SCFD1-208ENST00000553278 GPBP1L1Q9HC44 474 aaPredicted RBP10.7□□□□□ -0.7
SCFD1-208ENST00000553278 IL27Q8NEV9 243 aa10.69□□□□□ -0.7
SCFD1-208ENST00000553278 ZMYND15Q9H091 742 aa10.69□□□□□ -0.7
SCFD1-208ENST00000553278 RBM26Q5T8P6 1007 aaKnown RBP10.68□□□□□ -0.7
SCFD1-208ENST00000553278 MS4A4AQ96JQ5 239 aa10.68□□□□□ -0.7
SCFD1-208ENST00000553278 GOLGA2Q08379 1002 aa10.67□□□□□ -0.7
SCFD1-208ENST00000553278 DCBLD2Q96PD2 775 aa10.67□□□□□ -0.7
SCFD1-208ENST00000553278 KDM4CQ9H3R0 1056 aa10.67□□□□□ -0.7
SCFD1-208ENST00000553278 RSPH6AQ9H0K4 717 aa10.66□□□□□ -0.7
SCFD1-208ENST00000553278 MLLT3P42568 568 aaPredicted RBP10.65□□□□□ -0.7
SCFD1-208ENST00000553278 TRIM66O15016 1216 aa10.62□□□□□ -0.71
SCFD1-208ENST00000553278 PDE4DQ08499 809 aa10.62□□□□□ -0.71
SCFD1-208ENST00000553278 PODXL2Q9NZ53 605 aa10.61□□□□□ -0.71
SCFD1-208ENST00000553278 POTEMA6NI47 508 aa10.6□□□□□ -0.71
SCFD1-208ENST00000553278 PPP1R15BQ5SWA1 713 aa10.6□□□□□ -0.71
SCFD1-208ENST00000553278 SPDYE16A6NNV3 312 aaPredicted RBP10.59□□□□□ -0.71
SCFD1-208ENST00000553278 UBTFP17480 764 aaKnown RBP10.58□□□□□ -0.72
SCFD1-208ENST00000553278 OTUD5Q96G74 571 aa10.58□□□□□ -0.72
SCFD1-208ENST00000553278 MKRN3Q13064 507 aaKnown RBP10.57□□□□□ -0.72
SCFD1-208ENST00000553278 TMEM106CQ9BVX2 250 aa10.55□□□□□ -0.72
SCFD1-208ENST00000553278 GPHNQ9NQX3 736 aaPredicted RBP10.55□□□□□ -0.72
SCFD1-208ENST00000553278 DPYSL4O14531 572 aa10.54□□□□□ -0.72
SCFD1-208ENST00000553278 POTEGQ6S5H5 508 aa10.54□□□□□ -0.72
SCFD1-208ENST00000553278 PDIA6Q15084 440 aa10.53□□□□□ -0.72
SCFD1-208ENST00000553278 ZRANB1Q9UGI0 708 aa10.52□□□□□ -0.73
SCFD1-208ENST00000553278 DDRGK1Q96HY6 314 aa10.51□□□□□ -0.73
SCFD1-208ENST00000553278 ZNF316A6NFI3 1004 aaPredicted RBP10.5□□□□□ -0.73
SCFD1-208ENST00000553278 MINK1Q8N4C8 1332 aaPredicted RBP10.5□□□□□ -0.73
SCFD1-208ENST00000553278 FAM117AQ9C073 453 aa10.49□□□□□ -0.73
SCFD1-208ENST00000553278 EMILIN3Q9NT22 766 aa10.49□□□□□ -0.73
SCFD1-208ENST00000553278 POTEB2H3BUK9 544 aa10.48□□□□□ -0.73
SCFD1-208ENST00000553278 RANGAP1P46060 587 aaPredicted RBP10.47□□□□□ -0.73
SCFD1-208ENST00000553278 PHF12Q96QT6 1004 aa10.47□□□□□ -0.73
SCFD1-208ENST00000553278 PCDH10Q9P2E7 1040 aa10.47□□□□□ -0.73
SCFD1-208ENST00000553278 GPR37O15354 613 aa10.46□□□□□ -0.73
SCFD1-208ENST00000553278 FLIIQ13045 1269 aa10.46□□□□□ -0.73
SCFD1-208ENST00000553278 ARID3AQ99856 593 aa10.46□□□□□ -0.73
SCFD1-208ENST00000553278 MAP2K5Q13163 448 aa10.45□□□□□ -0.74
SCFD1-208ENST00000553278 DSG2Q14126 1118 aa10.45□□□□□ -0.74
SCFD1-208ENST00000553278 TMC2Q8TDI7 906 aa10.44□□□□□ -0.74
SCFD1-208ENST00000553278 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.44□□□□□ -0.747e-11■■□□□ 13.3
SCFD1-208ENST00000553278 NUTM2FA1L443 756 aa10.43□□□□□ -0.74
SCFD1-208ENST00000553278 GALR2O43603 387 aaPredicted RBP10.43□□□□□ -0.74
SCFD1-208ENST00000553278 CCDC102AQ96A19 550 aa10.43□□□□□ -0.74
SCFD1-208ENST00000553278 PLEKHG3A1L390 1219 aa10.42□□□□□ -0.74
SCFD1-208ENST00000553278 AMHR2Q16671 573 aa10.42□□□□□ -0.74
SCFD1-208ENST00000553278 IRF6O14896 467 aa10.41□□□□□ -0.74
SCFD1-208ENST00000553278 TRIM26Q12899 539 aaPredicted RBP10.41□□□□□ -0.74
SCFD1-208ENST00000553278 ILDR1Q86SU0 546 aaPredicted RBP10.41□□□□□ -0.74
SCFD1-208ENST00000553278 FOXK1P85037 733 aa10.4□□□□□ -0.74
SCFD1-208ENST00000553278 GRXCR2A6NFK2 248 aa10.39□□□□□ -0.75
SCFD1-208ENST00000553278 PARP9Q8IXQ6 854 aa10.39□□□□□ -0.75
SCFD1-208ENST00000553278 APBB1O00213 710 aa10.38□□□□□ -0.75
SCFD1-208ENST00000553278 MS4A3Q96HJ5 214 aa10.38□□□□□ -0.75
SCFD1-208ENST00000553278 C1orf115Q9H7X2 142 aa10.38□□□□□ -0.75
SCFD1-208ENST00000553278 GOPCQ9HD26 462 aa10.38□□□□□ -0.75
SCFD1-208ENST00000553278 GNPATO15228 680 aa10.37□□□□□ -0.75
SCFD1-208ENST00000553278 TIE1P35590 1138 aa10.37□□□□□ -0.75
SCFD1-208ENST00000553278 MAP3K9P80192 1104 aa10.37□□□□□ -0.75
SCFD1-208ENST00000553278 TRPC6Q9Y210 931 aa10.37□□□□□ -0.75
SCFD1-208ENST00000553278 FCHSD2O94868 740 aa10.35□□□□□ -0.75
SCFD1-208ENST00000553278 HIC1Q14526 733 aa10.35□□□□□ -0.75
SCFD1-208ENST00000553278 PLPP6Q8IY26 295 aa10.35□□□□□ -0.75
SCFD1-208ENST00000553278 MICALL2Q8IY33 904 aa10.35□□□□□ -0.75
SCFD1-208ENST00000553278 ARID3CA6NKF2 412 aa10.34□□□□□ -0.75
SCFD1-208ENST00000553278 TTLL12Q14166 644 aaPredicted RBP10.34□□□□□ -0.75
SCFD1-208ENST00000553278 TTLL13PA6NNM8 815 aa10.33□□□□□ -0.76
SCFD1-208ENST00000553278 HRCP23327 699 aa10.32□□□□□ -0.76
SCFD1-208ENST00000553278 PCMTD1Q96MG8 357 aaPredicted RBP10.32□□□□□ -0.76
SCFD1-208ENST00000553278 OSBPP22059 807 aa10.31□□□□□ -0.76
SCFD1-208ENST00000553278 A6NJR5 290 aa10.3□□□□□ -0.76
SCFD1-208ENST00000553278 DPY19L2Q6NUT2 758 aa10.3□□□□□ -0.76
SCFD1-208ENST00000553278 PELP1Q8IZL8 1130 aaKnown RBP10.29□□□□□ -0.76
SCFD1-208ENST00000553278 ONECUT3O60422 494 aaPredicted RBP10.28□□□□□ -0.76
SCFD1-208ENST00000553278 PDIA4P13667 645 aaKnown RBP10.28□□□□□ -0.76
SCFD1-208ENST00000553278 PTGER2P43116 358 aa10.28□□□□□ -0.76
SCFD1-208ENST00000553278 C2orf72A6NCS6 295 aa10.27□□□□□ -0.77
SCFD1-208ENST00000553278 G3V3G9 751 aa10.27□□□□□ -0.77
SCFD1-208ENST00000553278 FECHP22830 423 aa10.27□□□□□ -0.77
SCFD1-208ENST00000553278 TRAK2O60296 914 aa10.26□□□□□ -0.77
SCFD1-208ENST00000553278 GIGYF2Q6Y7W6 1299 aaKnown RBP10.26□□□□□ -0.77
SCFD1-208ENST00000553278 TRIM35Q9UPQ4 493 aa10.26□□□□□ -0.77
SCFD1-208ENST00000553278 ZBTB7CA1YPR0 619 aa10.25□□□□□ -0.77
SCFD1-208ENST00000553278 BMP2KQ9NSY1 1161 aaPredicted RBP10.25□□□□□ -0.77
SCFD1-208ENST00000553278 KIF3CO14782 793 aa10.24□□□□□ -0.77
SCFD1-208ENST00000553278 LCE2DQ5TA82 110 aaPredicted RBP10.24□□□□□ -0.77
SCFD1-208ENST00000553278 NPM2Q86SE8 214 aaKnown RBP10.24□□□□□ -0.77
SCFD1-208ENST00000553278 DDX12PQ92771 950 aa10.24□□□□□ -0.77
SCFD1-208ENST00000553278 UPF1Q92900 1129 aaKnown RBP eCLIP10.24□□□□□ -0.77
SCFD1-208ENST00000553278 CLUAP1Q96AJ1 413 aa10.24□□□□□ -0.77
SCFD1-208ENST00000553278 TBC1D12O60347 775 aa10.23□□□□□ -0.77
SCFD1-208ENST00000553278 POTEJP0CG39 1038 aa10.22□□□□□ -0.77
SCFD1-208ENST00000553278 MS4A1P11836 297 aa10.22□□□□□ -0.77
SCFD1-208ENST00000553278 CCDC82Q8N4S0 544 aa10.22□□□□□ -0.77
SCFD1-208ENST00000553278 TMEM121BQ9BXQ6 578 aaPredicted RBP10.22□□□□□ -0.77
SCFD1-208ENST00000553278 METRNQ9UJH8 293 aa10.22□□□□□ -0.77
SCFD1-208ENST00000553278 BOLA1Q9Y3E2 137 aa10.22□□□□□ -0.77
SCFD1-208ENST00000553278 PTGDRQ13258 359 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms