RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 EFCAB2Q5VUJ9 269 aa30.03■■■□□ 2.4
HDAC4-217ENST00000553145 VPS8Q8N3P4 1428 aa30.01■■■□□ 2.39
HDAC4-217ENST00000553145 SCAPERQ9BY12 1400 aa30.01■■■□□ 2.39
HDAC4-217ENST00000553145 CDC42BPAQ5VT25 1732 aa29.99■■■□□ 2.39
HDAC4-217ENST00000553145 POGZQ7Z3K3 1410 aa29.98■■■□□ 2.39
HDAC4-217ENST00000553145 ZMYM4Q5VZL5 1548 aa29.97■■■□□ 2.39
HDAC4-217ENST00000553145 MTUS2Q5JR59 1369 aa29.97■■■□□ 2.39
HDAC4-217ENST00000553145 ARHGEF40Q8TER5 1519 aa29.95■■■□□ 2.38
HDAC4-217ENST00000553145 EHBP1L1Q8N3D4 1523 aa29.94■■■□□ 2.38
HDAC4-217ENST00000553145 GPATCH8Q9UKJ3 1502 aaKnown RBP29.91■■■□□ 2.38
HDAC4-217ENST00000553145 TIAM1Q13009 1591 aa29.91■■■□□ 2.38
HDAC4-217ENST00000553145 ABCC1P33527 1531 aa29.89■■■□□ 2.38
HDAC4-217ENST00000553145 YEATS2Q9ULM3 1422 aa29.88■■■□□ 2.37
HDAC4-217ENST00000553145 ZFYVE16Q7Z3T8 1539 aa29.88■■■□□ 2.37
HDAC4-217ENST00000553145 ARHGEF12Q9NZN5 1544 aa29.86■■■□□ 2.37
HDAC4-217ENST00000553145 MAGI2Q86UL8 1455 aa29.86■■■□□ 2.37
HDAC4-217ENST00000553145 ZNF518AQ6AHZ1 1483 aa29.85■■■□□ 2.37
HDAC4-217ENST00000553145 CCNB3Q8WWL7 1395 aa29.84■■■□□ 2.37
HDAC4-217ENST00000553145 KDM5CP41229 1560 aa29.84■■■□□ 2.37
HDAC4-217ENST00000553145 SAMD9LQ8IVG5 1584 aa29.84■■■□□ 2.37
HDAC4-217ENST00000553145 ITSN2Q9NZM3 1697 aa29.84■■■□□ 2.37
HDAC4-217ENST00000553145 AFAP1Q8N556 730 aa29.82■■■□□ 2.36
HDAC4-217ENST00000553145 TRAPPC8Q9Y2L5 1435 aa29.8■■■□□ 2.36
HDAC4-217ENST00000553145 SIGLEC1Q9BZZ2 1709 aa29.79■■■□□ 2.36
HDAC4-217ENST00000553145 ZNF777Q9ULD5 760 aaPredicted RBP29.79■■■□□ 2.36
HDAC4-217ENST00000553145 SUPT6HQ7KZ85 1726 aaKnown RBP29.77■■■□□ 2.36
HDAC4-217ENST00000553145 NCOA2Q15596 1464 aa29.77■■■□□ 2.36
HDAC4-217ENST00000553145 MAP3K1Q13233 1512 aa29.76■■■□□ 2.36
HDAC4-217ENST00000553145 SYCP2Q9BX26 1530 aa29.76■■■□□ 2.36
HDAC4-217ENST00000553145 LRRC9Q6ZRR7 1453 aa29.76■■■□□ 2.35
HDAC4-217ENST00000553145 CFDP1Q9UEE9 299 aaPredicted RBP29.76■■■□□ 2.35
HDAC4-217ENST00000553145 HECW2Q9P2P5 1572 aa29.76■■■□□ 2.35
HDAC4-217ENST00000553145 BCORL1Q5H9F3 1711 aa29.75■■■□□ 2.35
HDAC4-217ENST00000553145 ADAMTSL3P82987 1691 aa29.74■■■□□ 2.35
HDAC4-217ENST00000553145 ARID4BQ4LE39 1312 aaPredicted RBP29.72■■■□□ 2.35
HDAC4-217ENST00000553145 ATP10AO60312 1499 aa29.7■■■□□ 2.35
HDAC4-217ENST00000553145 MLH3Q9UHC1 1453 aa29.7■■■□□ 2.35
HDAC4-217ENST00000553145 KANK4Q5T7N3 995 aaPredicted RBP29.7■■■□□ 2.35
HDAC4-217ENST00000553145 DIP2CQ9Y2E4 1556 aa29.69■■■□□ 2.34
HDAC4-217ENST00000553145 ABCA6Q8N139 1617 aa29.68■■■□□ 2.34
HDAC4-217ENST00000553145 HNRNPMP52272 730 aaKnown RBP eCLIP29.68■■■□□ 2.34
HDAC4-217ENST00000553145 C9orf84Q5VXU9 1444 aa29.68■■■□□ 2.34
HDAC4-217ENST00000553145 KIAA1107Q9UPP5 1409 aa29.68■■■□□ 2.34
HDAC4-217ENST00000553145 PLEKHH2Q8IVE3 1493 aa29.68■■■□□ 2.34
HDAC4-217ENST00000553145 ZNF644Q9H582 1327 aaPredicted RBP29.67■■■□□ 2.34
HDAC4-217ENST00000553145 MADDQ8WXG6 1647 aa29.65■■■□□ 2.34
HDAC4-217ENST00000553145 KIDINS220Q9ULH0 1771 aa29.64■■■□□ 2.34
HDAC4-217ENST00000553145 MYT1LQ9UL68 1186 aa29.64■■■□□ 2.34
HDAC4-217ENST00000553145 PTPRMP28827 1452 aa29.59■■■□□ 2.33
HDAC4-217ENST00000553145 MBD5Q9P267 1494 aa29.59■■■□□ 2.33
HDAC4-217ENST00000553145 REREQ9P2R6 1566 aa29.59■■■□□ 2.33
HDAC4-217ENST00000553145 CAMSAP2Q08AD1 1489 aa29.57■■■□□ 2.32
HDAC4-217ENST00000553145 INO80Q9ULG1 1556 aaPredicted RBP29.56■■■□□ 2.32
HDAC4-217ENST00000553145 SPAG9O60271 1321 aaKnown RBP29.56■■■□□ 2.32
HDAC4-217ENST00000553145 RIMS1Q86UR5 1692 aaKnown RBP29.56■■■□□ 2.32
HDAC4-217ENST00000553145 MLECQ14165 292 aa29.55■■■□□ 2.32
HDAC4-217ENST00000553145 ATP7AQ04656 1500 aa29.55■■■□□ 2.32
HDAC4-217ENST00000553145 APLP2Q06481 763 aa29.54■■■□□ 2.32
HDAC4-217ENST00000553145 MYOM3Q5VTT5 1437 aa29.5■■■□□ 2.31
HDAC4-217ENST00000553145 AGLP35573 1532 aa29.49■■■□□ 2.31
HDAC4-217ENST00000553145 FER1L4A9Z1Z3 1794 aa29.49■■■□□ 2.31
HDAC4-217ENST00000553145 CCDC141Q6ZP82 1450 aa29.46■■■□□ 2.31
HDAC4-217ENST00000553145 MIA2Q96PC5 1412 aa29.44■■■□□ 2.3
HDAC4-217ENST00000553145 ARHGEF5Q12774 1597 aa29.43■■■□□ 2.3
HDAC4-217ENST00000553145 PLXNC1O60486 1568 aa29.42■■■□□ 2.3
HDAC4-217ENST00000553145 RTEL1-TNFRSF6BF6WH68 1400 aa29.4■■■□□ 2.3
HDAC4-217ENST00000553145 A2MP01023 1474 aa29.4■■■□□ 2.3
HDAC4-217ENST00000553145 ADGBQ8N7X0 1667 aa29.37■■■□□ 2.29
HDAC4-217ENST00000553145 RSPH4AQ5TD94 716 aa29.36■■■□□ 2.29
HDAC4-217ENST00000553145 PLPPR3Q6T4P5 718 aa29.34■■■□□ 2.29
HDAC4-217ENST00000553145 PTPN23Q9H3S7 1636 aa29.32■■■□□ 2.28
HDAC4-217ENST00000553145 FGD6Q6ZV73 1430 aa29.3■■■□□ 2.28
HDAC4-217ENST00000553145 MAST1Q9Y2H9 1570 aa29.29■■■□□ 2.28
HDAC4-217ENST00000553145 CEBPAP49715 358 aaPredicted RBP29.27■■■□□ 2.28
HDAC4-217ENST00000553145 TCOF1Q13428 1488 aaKnown RBP29.27■■■□□ 2.28
HDAC4-217ENST00000553145 DHX29Q7Z478 1369 aaKnown RBP29.26■■■□□ 2.28
HDAC4-217ENST00000553145 TSPY4P0CV99 314 aa29.26■■■□□ 2.27
HDAC4-217ENST00000553145 TSPY10P0CW01 314 aa29.26■■■□□ 2.27
HDAC4-217ENST00000553145 LMTK3Q96Q04 1460 aa29.24■■■□□ 2.27
HDAC4-217ENST00000553145 C3P01024 1663 aa29.23■■■□□ 2.27
HDAC4-217ENST00000553145 CROCC2H7BZ55 1655 aa29.21■■■□□ 2.27
HDAC4-217ENST00000553145 ABCC5O15440 1437 aa29.2■■■□□ 2.27
HDAC4-217ENST00000553145 CNTLNQ9NXG0 1405 aa29.2■■■□□ 2.27
HDAC4-217ENST00000553145 GGT6Q6P531 493 aa29.19■■■□□ 2.26
HDAC4-217ENST00000553145 ESF1Q9H501 851 aaKnown RBP29.19■■■□□ 2.26
HDAC4-217ENST00000553145 DNMT1P26358 1616 aaKnown RBP29.19■■■□□ 2.26
HDAC4-217ENST00000553145 MROH2AA6NES4 1674 aa29.17■■■□□ 2.26
HDAC4-217ENST00000553145 CLTCQ00610 1675 aaKnown RBP29.17■■■□□ 2.26
HDAC4-217ENST00000553145 DAPK1P53355 1430 aa29.17■■■□□ 2.26
HDAC4-217ENST00000553145 SHANK2Q9UPX8 1470 aa29.17■■■□□ 2.26
HDAC4-217ENST00000553145 KIF3BO15066 747 aa29.13■■■□□ 2.25
HDAC4-217ENST00000553145 PREX1Q8TCU6 1659 aa29.12■■■□□ 2.25
HDAC4-217ENST00000553145 PPARGC1BQ86YN6 1023 aaKnown RBP29.11■■■□□ 2.25
HDAC4-217ENST00000553145 ZMYM3Q14202 1370 aa29.1■■■□□ 2.25
HDAC4-217ENST00000553145 HSPA2P54652 639 aa29.07■■■□□ 2.24
HDAC4-217ENST00000553145 PPP6R1Q9UPN7 881 aa29.07■■■□□ 2.24
HDAC4-217ENST00000553145 EIF2AK4Q9P2K8 1649 aaKnown RBP29.06■■■□□ 2.24
HDAC4-217ENST00000553145 DUOX2Q9NRD8 1548 aa29.06■■■□□ 2.24
HDAC4-217ENST00000553145 FAM50AQ14320 339 aaKnown RBP29.06■■■□□ 2.24
HDAC4-217ENST00000553145 RNF17Q9BXT8 1623 aaKnown RBP29.05■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms