RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 PHLDB1Q86UU1 1377 aa11.6□□□□□ -0.55
LIMA1-216ENST00000552909 MYO5CQ9NQX4 1742 aa11.6□□□□□ -0.55
LIMA1-216ENST00000552909 EFCAB2Q5VUJ9 269 aa11.59□□□□□ -0.55
LIMA1-216ENST00000552909 CDC42BPBQ9Y5S2 1711 aa11.59□□□□□ -0.55
LIMA1-216ENST00000552909 KANK4Q5T7N3 995 aaPredicted RBP11.58□□□□□ -0.56
LIMA1-216ENST00000552909 ARHGAP5Q13017 1502 aa11.57□□□□□ -0.56
LIMA1-216ENST00000552909 TIAM1Q13009 1591 aa11.57□□□□□ -0.56
LIMA1-216ENST00000552909 FRMPD1Q5SYB0 1578 aa11.57□□□□□ -0.56
LIMA1-216ENST00000552909 CDC42BPAQ5VT25 1732 aa11.57□□□□□ -0.56
LIMA1-216ENST00000552909 GTF3C3Q9Y5Q9 886 aa11.57□□□□□ -0.56
LIMA1-216ENST00000552909 SCAPERQ9BY12 1400 aa11.57□□□□□ -0.56
LIMA1-216ENST00000552909 DENND4BO75064 1496 aaPredicted RBP11.56□□□□□ -0.56
LIMA1-216ENST00000552909 ADGRL1O94910 1474 aa11.56□□□□□ -0.56
LIMA1-216ENST00000552909 GPATCH8Q9UKJ3 1502 aaKnown RBP11.56□□□□□ -0.56
LIMA1-216ENST00000552909 CFAP74Q9C0B2 1584 aa11.56□□□□□ -0.56
LIMA1-216ENST00000552909 PREX2Q70Z35 1606 aa11.55□□□□□ -0.56
LIMA1-216ENST00000552909 CENPBP07199 599 aaPredicted RBP11.55□□□□□ -0.56
LIMA1-216ENST00000552909 ZNF777Q9ULD5 760 aaPredicted RBP11.55□□□□□ -0.56
LIMA1-216ENST00000552909 RICTORQ6R327 1708 aa11.55□□□□□ -0.56
LIMA1-216ENST00000552909 EHBP1L1Q8N3D4 1523 aa11.55□□□□□ -0.56
LIMA1-216ENST00000552909 AFAP1Q8N556 730 aa11.54□□□□□ -0.56
LIMA1-216ENST00000552909 LRRC9Q6ZRR7 1453 aa11.54□□□□□ -0.56
LIMA1-216ENST00000552909 KDM4FA0A1W2PPD8 638 aa11.54□□□□□ -0.56
LIMA1-216ENST00000552909 CCNB3Q8WWL7 1395 aa11.53□□□□□ -0.56
LIMA1-216ENST00000552909 ARHGEF12Q9NZN5 1544 aa11.53□□□□□ -0.56
LIMA1-216ENST00000552909 CFDP1Q9UEE9 299 aaPredicted RBP11.52□□□□□ -0.56
LIMA1-216ENST00000552909 ZNF644Q9H582 1327 aaPredicted RBP11.52□□□□□ -0.57
LIMA1-216ENST00000552909 POGZQ7Z3K3 1410 aa11.52□□□□□ -0.57
LIMA1-216ENST00000552909 NCOA2Q15596 1464 aa11.52□□□□□ -0.57
LIMA1-216ENST00000552909 MAP3K1Q13233 1512 aa11.51□□□□□ -0.57
LIMA1-216ENST00000552909 HNRNPMP52272 730 aaKnown RBP eCLIP11.51□□□□□ -0.57
LIMA1-216ENST00000552909 YEATS2Q9ULM3 1422 aa11.5□□□□□ -0.57
LIMA1-216ENST00000552909 TRAPPC8Q9Y2L5 1435 aa11.5□□□□□ -0.57
LIMA1-216ENST00000552909 APLP2Q06481 763 aa11.5□□□□□ -0.57
LIMA1-216ENST00000552909 SUPT6HQ7KZ85 1726 aaKnown RBP11.5□□□□□ -0.57
LIMA1-216ENST00000552909 SAMD9LQ8IVG5 1584 aa11.5□□□□□ -0.57
LIMA1-216ENST00000552909 ABCC1P33527 1531 aa11.49□□□□□ -0.57
LIMA1-216ENST00000552909 ZMYM4Q5VZL5 1548 aa11.48□□□□□ -0.57
LIMA1-216ENST00000552909 ZNF518AQ6AHZ1 1483 aa11.48□□□□□ -0.57
LIMA1-216ENST00000552909 SYCP2Q9BX26 1530 aa11.47□□□□□ -0.57
LIMA1-216ENST00000552909 ITSN2Q9NZM3 1697 aa11.46□□□□□ -0.57
LIMA1-216ENST00000552909 AEBP2Q6ZN18 517 aaPredicted RBP11.46□□□□□ -0.57
LIMA1-216ENST00000552909 MYT1LQ9UL68 1186 aa11.46□□□□□ -0.57
LIMA1-216ENST00000552909 KDM5CP41229 1560 aa11.46□□□□□ -0.58
LIMA1-216ENST00000552909 ZFYVE16Q7Z3T8 1539 aa11.45□□□□□ -0.58
LIMA1-216ENST00000552909 ARHGEF40Q8TER5 1519 aa11.45□□□□□ -0.58
LIMA1-216ENST00000552909 MAGI2Q86UL8 1455 aa11.45□□□□□ -0.58
LIMA1-216ENST00000552909 SIGLEC1Q9BZZ2 1709 aa11.45□□□□□ -0.58
LIMA1-216ENST00000552909 ARID4BQ4LE39 1312 aaPredicted RBP11.45□□□□□ -0.58
LIMA1-216ENST00000552909 KIAA1107Q9UPP5 1409 aa11.44□□□□□ -0.58
LIMA1-216ENST00000552909 MBD5Q9P267 1494 aa11.43□□□□□ -0.58
LIMA1-216ENST00000552909 MLH3Q9UHC1 1453 aa11.43□□□□□ -0.58
LIMA1-216ENST00000552909 HECW2Q9P2P5 1572 aa11.42□□□□□ -0.58
LIMA1-216ENST00000552909 ATP10AO60312 1499 aa11.42□□□□□ -0.58
LIMA1-216ENST00000552909 CAMSAP2Q08AD1 1489 aa11.42□□□□□ -0.58
LIMA1-216ENST00000552909 PLEKHH2Q8IVE3 1493 aa11.42□□□□□ -0.58
LIMA1-216ENST00000552909 KIDINS220Q9ULH0 1771 aa11.42□□□□□ -0.58
LIMA1-216ENST00000552909 MYOM3Q5VTT5 1437 aa11.41□□□□□ -0.58
LIMA1-216ENST00000552909 SPAG9O60271 1321 aaKnown RBP11.41□□□□□ -0.58
LIMA1-216ENST00000552909 MLECQ14165 292 aa11.41□□□□□ -0.58
LIMA1-216ENST00000552909 DIP2CQ9Y2E4 1556 aa11.4□□□□□ -0.58
LIMA1-216ENST00000552909 ABCA6Q8N139 1617 aa11.4□□□□□ -0.58
LIMA1-216ENST00000552909 C9orf84Q5VXU9 1444 aa11.39□□□□□ -0.59
LIMA1-216ENST00000552909 BCORL1Q5H9F3 1711 aa11.39□□□□□ -0.59
LIMA1-216ENST00000552909 DIEXFQ68CQ4 756 aaKnown RBP11.38□□□□□ -0.59
LIMA1-216ENST00000552909 MIA2Q96PC5 1412 aa11.38□□□□□ -0.59
LIMA1-216ENST00000552909 ADAMTSL3P82987 1691 aa11.37□□□□□ -0.59
LIMA1-216ENST00000552909 ATP7AQ04656 1500 aa11.37□□□□□ -0.59
LIMA1-216ENST00000552909 CCDC141Q6ZP82 1450 aa11.36□□□□□ -0.59
LIMA1-216ENST00000552909 INO80Q9ULG1 1556 aaPredicted RBP11.36□□□□□ -0.59
LIMA1-216ENST00000552909 FGD6Q6ZV73 1430 aa11.36□□□□□ -0.59
LIMA1-216ENST00000552909 MADDQ8WXG6 1647 aa11.35□□□□□ -0.59
LIMA1-216ENST00000552909 RSPH4AQ5TD94 716 aa11.35□□□□□ -0.59
LIMA1-216ENST00000552909 PTPN23Q9H3S7 1636 aa11.34□□□□□ -0.59
LIMA1-216ENST00000552909 TSPY4P0CV99 314 aa11.34□□□□□ -0.59
LIMA1-216ENST00000552909 TSPY10P0CW01 314 aa11.34□□□□□ -0.59
LIMA1-216ENST00000552909 ARHGEF5Q12774 1597 aa11.34□□□□□ -0.59
LIMA1-216ENST00000552909 REREQ9P2R6 1566 aa11.33□□□□□ -0.6
LIMA1-216ENST00000552909 PLPPR3Q6T4P5 718 aa11.33□□□□□ -0.6
LIMA1-216ENST00000552909 PTPRMP28827 1452 aa11.33□□□□□ -0.6
LIMA1-216ENST00000552909 RTEL1-TNFRSF6BF6WH68 1400 aa11.33□□□□□ -0.6
LIMA1-216ENST00000552909 A2MP01023 1474 aa11.32□□□□□ -0.6
LIMA1-216ENST00000552909 FAM50AQ14320 339 aaKnown RBP11.31□□□□□ -0.6
LIMA1-216ENST00000552909 ABCC5O15440 1437 aa11.31□□□□□ -0.6
LIMA1-216ENST00000552909 AGLP35573 1532 aa11.31□□□□□ -0.6
LIMA1-216ENST00000552909 RIMS1Q86UR5 1692 aaKnown RBP11.31□□□□□ -0.6
LIMA1-216ENST00000552909 TCOF1Q13428 1488 aaKnown RBP11.31□□□□□ -0.6
LIMA1-216ENST00000552909 PLXNC1O60486 1568 aa11.3□□□□□ -0.6
LIMA1-216ENST00000552909 CEBPAP49715 358 aaPredicted RBP11.3□□□□□ -0.6
LIMA1-216ENST00000552909 CCER1Q8TC90 406 aaPredicted RBP11.3□□□□□ -0.6
LIMA1-216ENST00000552909 CHIC2Q9UKJ5 165 aa11.3□□□□□ -0.6
LIMA1-216ENST00000552909 DHX29Q7Z478 1369 aaKnown RBP11.3□□□□□ -0.6
LIMA1-216ENST00000552909 ADGBQ8N7X0 1667 aa11.29□□□□□ -0.6
LIMA1-216ENST00000552909 FER1L4A9Z1Z3 1794 aa11.29□□□□□ -0.6
LIMA1-216ENST00000552909 GGT6Q6P531 493 aa11.29□□□□□ -0.6
LIMA1-216ENST00000552909 DAPK1P53355 1430 aa11.28□□□□□ -0.6
LIMA1-216ENST00000552909 KIF3BO15066 747 aa11.27□□□□□ -0.6
LIMA1-216ENST00000552909 RRP7BPQ9NSQ0 103 aa11.27□□□□□ -0.6
LIMA1-216ENST00000552909 MAST1Q9Y2H9 1570 aa11.27□□□□□ -0.61
LIMA1-216ENST00000552909 DNMT1P26358 1616 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms