RNA–Protein interactions for RNA: ENST00000551301.1

SLC48A1-208, Transcript of solute carrier family 48 member 1, human

TSL 2

Gene SLC48A1, Length 1,070 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLC48A1-208	ENST00000551301	ZMYM4	Q5VZL5	1548 aa		32.72	■■■□□ 2.83
SLC48A1-208	ENST00000551301	ARHGAP5	Q13017	1502 aa		32.71	■■■□□ 2.83
SLC48A1-208	ENST00000551301	POGZ	Q7Z3K3	1410 aa		32.68	■■■□□ 2.82
SLC48A1-208	ENST00000551301	ZFYVE16	Q7Z3T8	1539 aa		32.67	■■■□□ 2.82
SLC48A1-208	ENST00000551301	ADAMTSL3	P82987	1691 aa		32.62	■■■□□ 2.81
SLC48A1-208	ENST00000551301	BCORL1	Q5H9F3	1711 aa		32.62	■■■□□ 2.81
SLC48A1-208	ENST00000551301	ZNF518A	Q6AHZ1	1483 aa		32.59	■■■□□ 2.81
SLC48A1-208	ENST00000551301	YEATS2	Q9ULM3	1422 aa		32.59	■■■□□ 2.81
SLC48A1-208	ENST00000551301	PTPRM	P28827	1452 aa		32.57	■■■□□ 2.8
SLC48A1-208	ENST00000551301	MYT1L	Q9UL68	1186 aa		32.57	■■■□□ 2.8
SLC48A1-208	ENST00000551301	HECW2	Q9P2P5	1572 aa		32.56	■■■□□ 2.8
SLC48A1-208	ENST00000551301	PREX2	Q70Z35	1606 aa		32.55	■■■□□ 2.8
SLC48A1-208	ENST00000551301	CEP162	Q5TB80	1403 aa		32.53	■■■□□ 2.8
SLC48A1-208	ENST00000551301	CDC42BPB	Q9Y5S2	1711 aa		32.53	■■■□□ 2.8
SLC48A1-208	ENST00000551301	MADD	Q8WXG6	1647 aa		32.51	■■■□□ 2.8
SLC48A1-208	ENST00000551301	ATP10A	O60312	1499 aa		32.51	■■■□□ 2.79
SLC48A1-208	ENST00000551301	AFAP1	Q8N556	730 aa		32.5	■■■□□ 2.79
SLC48A1-208	ENST00000551301	MTUS2	Q5JR59	1369 aa		32.48	■■■□□ 2.79
SLC48A1-208	ENST00000551301	C9orf84	Q5VXU9	1444 aa		32.47	■■■□□ 2.79
SLC48A1-208	ENST00000551301	MLEC	Q14165	292 aa		32.45	■■■□□ 2.79
SLC48A1-208	ENST00000551301	KDM5C	P41229	1560 aa		32.45	■■■□□ 2.78
SLC48A1-208	ENST00000551301	CDC42BPA	Q5VT25	1732 aa		32.44	■■■□□ 2.78
SLC48A1-208	ENST00000551301	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.43	■■■□□ 2.78
SLC48A1-208	ENST00000551301	ABCC1	P33527	1531 aa		32.42	■■■□□ 2.78
SLC48A1-208	ENST00000551301	RIMS1	Q86UR5	1692 aa	Known RBP	32.42	■■■□□ 2.78
SLC48A1-208	ENST00000551301	CCNB3	Q8WWL7	1395 aa		32.4	■■■□□ 2.78
SLC48A1-208	ENST00000551301	MLH3	Q9UHC1	1453 aa		32.38	■■■□□ 2.77
SLC48A1-208	ENST00000551301	CFDP1	Q9UEE9	299 aa	Predicted RBP	32.38	■■■□□ 2.77
SLC48A1-208	ENST00000551301	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32.37	■■■□□ 2.77
SLC48A1-208	ENST00000551301	ITSN2	Q9NZM3	1697 aa		32.37	■■■□□ 2.77
SLC48A1-208	ENST00000551301	TRAPPC8	Q9Y2L5	1435 aa		32.35	■■■□□ 2.77
SLC48A1-208	ENST00000551301	SIGLEC1	Q9BZZ2	1709 aa		32.35	■■■□□ 2.77
SLC48A1-208	ENST00000551301	PLPPR3	Q6T4P5	718 aa		32.34	■■■□□ 2.77
SLC48A1-208	ENST00000551301	ARHGEF12	Q9NZN5	1544 aa		32.33	■■■□□ 2.77
SLC48A1-208	ENST00000551301	PLEKHH2	Q8IVE3	1493 aa		32.32	■■■□□ 2.76
SLC48A1-208	ENST00000551301	FER1L4	A9Z1Z3	1794 aa		32.32	■■■□□ 2.76
SLC48A1-208	ENST00000551301	EHBP1L1	Q8N3D4	1523 aa		32.31	■■■□□ 2.76
SLC48A1-208	ENST00000551301	LOC105371045	A0A1W2PR82	267 aa		32.31	■■■□□ 2.76
SLC48A1-208	ENST00000551301	DIP2C	Q9Y2E4	1556 aa		32.3	■■■□□ 2.76
SLC48A1-208	ENST00000551301	SAMD9L	Q8IVG5	1584 aa		32.28	■■■□□ 2.76
SLC48A1-208	ENST00000551301	RERE	Q9P2R6	1566 aa		32.28	■■■□□ 2.76
SLC48A1-208	ENST00000551301	SYCP2	Q9BX26	1530 aa		32.26	■■■□□ 2.75
SLC48A1-208	ENST00000551301	KIAA1107	Q9UPP5	1409 aa		32.26	■■■□□ 2.75
SLC48A1-208	ENST00000551301	SPAG9	O60271	1321 aa	Known RBP	32.26	■■■□□ 2.75
SLC48A1-208	ENST00000551301	HNRNPM	P52272	730 aa	Known RBP eCLIP	32.25	■■■□□ 2.75
SLC48A1-208	ENST00000551301	ABCA6	Q8N139	1617 aa		32.25	■■■□□ 2.75
SLC48A1-208	ENST00000551301	ESF1	Q9H501	851 aa	Known RBP	32.24	■■■□□ 2.75
SLC48A1-208	ENST00000551301	KIDINS220	Q9ULH0	1771 aa		32.19	■■■□□ 2.74
SLC48A1-208	ENST00000551301	VPS8	Q8N3P4	1428 aa		32.19	■■■□□ 2.74
SLC48A1-208	ENST00000551301	AGL	P35573	1532 aa		32.19	■■■□□ 2.74
SLC48A1-208	ENST00000551301	LMTK3	Q96Q04	1460 aa		32.18	■■■□□ 2.74
SLC48A1-208	ENST00000551301	TIAM1	Q13009	1591 aa		32.17	■■■□□ 2.74
SLC48A1-208	ENST00000551301	SUPT6H	Q7KZ85	1726 aa	Known RBP	32.14	■■■□□ 2.74
SLC48A1-208	ENST00000551301	ATP7A	Q04656	1500 aa		32.11	■■■□□ 2.73
SLC48A1-208	ENST00000551301	NCOA2	Q15596	1464 aa		32.1	■■■□□ 2.73
SLC48A1-208	ENST00000551301	ZNF644	Q9H582	1327 aa	Predicted RBP	32.08	■■■□□ 2.73
SLC48A1-208	ENST00000551301	CEBPA	P49715	358 aa	Predicted RBP	32.08	■■■□□ 2.73
SLC48A1-208	ENST00000551301	HSPA2	P54652	639 aa		32.05	■■■□□ 2.72
SLC48A1-208	ENST00000551301	CNTLN	Q9NXG0	1405 aa		32.05	■■■□□ 2.72
SLC48A1-208	ENST00000551301	INO80	Q9ULG1	1556 aa	Predicted RBP	32.05	■■■□□ 2.72
SLC48A1-208	ENST00000551301	RSPH4A	Q5TD94	716 aa		32.02	■■■□□ 2.72
SLC48A1-208	ENST00000551301	A2M	P01023	1474 aa		32.02	■■■□□ 2.72
SLC48A1-208	ENST00000551301	LRRC9	Q6ZRR7	1453 aa		32.01	■■■□□ 2.71
SLC48A1-208	ENST00000551301	PREX1	Q8TCU6	1659 aa		32.01	■■■□□ 2.71
SLC48A1-208	ENST00000551301	MBD5	Q9P267	1494 aa		32	■■■□□ 2.71
SLC48A1-208	ENST00000551301	APLP2	Q06481	763 aa		32	■■■□□ 2.71
SLC48A1-208	ENST00000551301	SETD1B	Q9UPS6	1966 aa	Known RBP	31.99	■■■□□ 2.71
SLC48A1-208	ENST00000551301	ILDR1	Q86SU0	546 aa	Predicted RBP	31.99	■■■□□ 2.71
SLC48A1-208	ENST00000551301	MAP3K1	Q13233	1512 aa		31.99	■■■□□ 2.71
SLC48A1-208	ENST00000551301	RTEL1-TNFRSF6B	F6WH68	1400 aa		31.97	■■■□□ 2.71
SLC48A1-208	ENST00000551301	UHRF1BP1	Q6BDS2	1440 aa		31.97	■■■□□ 2.71
SLC48A1-208	ENST00000551301	CAMSAP2	Q08AD1	1489 aa		31.97	■■■□□ 2.71
SLC48A1-208	ENST00000551301	ADGB	Q8N7X0	1667 aa		31.95	■■■□□ 2.71
SLC48A1-208	ENST00000551301	CCDC141	Q6ZP82	1450 aa		31.94	■■■□□ 2.7
SLC48A1-208	ENST00000551301	C3	P01024	1663 aa		31.94	■■■□□ 2.7
SLC48A1-208	ENST00000551301	PLXNC1	O60486	1568 aa		31.93	■■■□□ 2.7
SLC48A1-208	ENST00000551301	GGT6	Q6P531	493 aa		31.91	■■■□□ 2.7
SLC48A1-208	ENST00000551301	TSPY4	P0CV99	314 aa		31.9	■■■□□ 2.7
SLC48A1-208	ENST00000551301	TSPY10	P0CW01	314 aa		31.9	■■■□□ 2.7
SLC48A1-208	ENST00000551301	PPP6R1	Q9UPN7	881 aa		31.9	■■■□□ 2.7
SLC48A1-208	ENST00000551301	MROH2A	A6NES4	1674 aa		31.87	■■■□□ 2.69
SLC48A1-208	ENST00000551301	KANK4	Q5T7N3	995 aa	Predicted RBP	31.87	■■■□□ 2.69
SLC48A1-208	ENST00000551301	ZMYM3	Q14202	1370 aa		31.85	■■■□□ 2.69
SLC48A1-208	ENST00000551301	DHX29	Q7Z478	1369 aa	Known RBP	31.85	■■■□□ 2.69
SLC48A1-208	ENST00000551301	DMRT2	Q9Y5R5	561 aa		31.84	■■■□□ 2.69
SLC48A1-208	ENST00000551301	ARHGEF5	Q12774	1597 aa		31.84	■■■□□ 2.69
SLC48A1-208	ENST00000551301	NPAT	Q14207	1427 aa		31.82	■■■□□ 2.68
SLC48A1-208	ENST00000551301	MYOM3	Q5VTT5	1437 aa		31.8	■■■□□ 2.68
SLC48A1-208	ENST00000551301	MIA2	Q96PC5	1412 aa		31.8	■■■□□ 2.68
SLC48A1-208	ENST00000551301	CLTC	Q00610	1675 aa	Known RBP	31.8	■■■□□ 2.68
SLC48A1-208	ENST00000551301	KIF3B	O15066	747 aa		31.78	■■■□□ 2.68
SLC48A1-208	ENST00000551301	FBXO41	Q8TF61	875 aa		31.75	■■■□□ 2.67
SLC48A1-208	ENST00000551301	WASHC2C	Q9Y4E1	1318 aa		31.67	■■■□□ 2.66
SLC48A1-208	ENST00000551301	FAM135A	Q9P2D6	1515 aa		31.66	■■■□□ 2.66
SLC48A1-208	ENST00000551301	PTPRK	Q15262	1439 aa		31.66	■■■□□ 2.66
SLC48A1-208	ENST00000551301	MAST1	Q9Y2H9	1570 aa		31.65	■■■□□ 2.66
SLC48A1-208	ENST00000551301	STRC	Q7RTU9	1775 aa		31.65	■■■□□ 2.66
SLC48A1-208	ENST00000551301	KDM5D	Q9BY66	1539 aa		31.62	■■■□□ 2.65
SLC48A1-208	ENST00000551301	CERK	Q8TCT0	537 aa		31.6	■■■□□ 2.65
SLC48A1-208	ENST00000551301	PTPRT	O14522	1441 aa		31.59	■■■□□ 2.65

Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms