RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, human

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF6-205	ENST00000550075	CDC42BPA	Q5VT25	1732 aa		41.02	■■■■■ 4.16
CPSF6-205	ENST00000550075	FRMPD1	Q5SYB0	1578 aa		41	■■■■■ 4.15
CPSF6-205	ENST00000550075	RICTOR	Q6R327	1708 aa		40.99	■■■■■ 4.15
CPSF6-205	ENST00000550075	MAP3K1	Q13233	1512 aa		40.98	■■■■■ 4.15
CPSF6-205	ENST00000550075	RAPGEF3	O95398	923 aa		40.97	■■■■■ 4.15
CPSF6-205	ENST00000550075	SCAPER	Q9BY12	1400 aa		40.93	■■■■■ 4.14
CPSF6-205	ENST00000550075	SUPT6H	Q7KZ85	1726 aa	Known RBP	40.93	■■■■■ 4.14
CPSF6-205	ENST00000550075	CCNB3	Q8WWL7	1395 aa		40.93	■■■■■ 4.14
CPSF6-205	ENST00000550075	GPATCH8	Q9UKJ3	1502 aa	Known RBP	40.9	■■■■■ 4.14
CPSF6-205	ENST00000550075	POGZ	Q7Z3K3	1410 aa		40.9	■■■■■ 4.14
CPSF6-205	ENST00000550075	ITSN2	Q9NZM3	1697 aa		40.88	■■■■■ 4.14
CPSF6-205	ENST00000550075	ZMYM4	Q5VZL5	1548 aa		40.88	■■■■■ 4.14
CPSF6-205	ENST00000550075	LRRC9	Q6ZRR7	1453 aa		40.88	■■■■■ 4.13
CPSF6-205	ENST00000550075	APLP2	Q06481	763 aa		40.86	■■■■■ 4.13
CPSF6-205	ENST00000550075	ABCC1	P33527	1531 aa		40.84	■■■■■ 4.13
CPSF6-205	ENST00000550075	NCOA2	Q15596	1464 aa		40.82	■■■■■ 4.12
CPSF6-205	ENST00000550075	ZNF518A	Q6AHZ1	1483 aa		40.82	■■■■■ 4.12
CPSF6-205	ENST00000550075	ARHGEF40	Q8TER5	1519 aa		40.81	■■■■■ 4.12
CPSF6-205	ENST00000550075	MAGI2	Q86UL8	1455 aa		40.78	■■■■■ 4.12
CPSF6-205	ENST00000550075	CFDP1	Q9UEE9	299 aa	Predicted RBP	40.77	■■■■■ 4.12
CPSF6-205	ENST00000550075	SAMD9L	Q8IVG5	1584 aa		40.76	■■■■■ 4.12
CPSF6-205	ENST00000550075	PLEKHH2	Q8IVE3	1493 aa		40.75	■■■■■ 4.11
CPSF6-205	ENST00000550075	ZFYVE16	Q7Z3T8	1539 aa		40.74	■■■■■ 4.11
CPSF6-205	ENST00000550075	ZNF777	Q9ULD5	760 aa	Predicted RBP	40.73	■■■■■ 4.11
CPSF6-205	ENST00000550075	KDM5C	P41229	1560 aa		40.72	■■■■■ 4.11
CPSF6-205	ENST00000550075	SYCP2	Q9BX26	1530 aa		40.67	■■■■■ 4.1
CPSF6-205	ENST00000550075	KANK4	Q5T7N3	995 aa	Predicted RBP	40.66	■■■■■ 4.1
CPSF6-205	ENST00000550075	ARHGEF12	Q9NZN5	1544 aa		40.66	■■■■■ 4.1
CPSF6-205	ENST00000550075	HECW2	Q9P2P5	1572 aa		40.65	■■■■■ 4.1
CPSF6-205	ENST00000550075	KIAA1107	Q9UPP5	1409 aa		40.64	■■■■■ 4.1
CPSF6-205	ENST00000550075	TRAPPC8	Q9Y2L5	1435 aa		40.62	■■■■■ 4.09
CPSF6-205	ENST00000550075	AEBP2	Q6ZN18	517 aa	Predicted RBP	40.62	■■■■■ 4.09
CPSF6-205	ENST00000550075	YEATS2	Q9ULM3	1422 aa		40.61	■■■■■ 4.09
CPSF6-205	ENST00000550075	AFAP1	Q8N556	730 aa		40.6	■■■■■ 4.09
CPSF6-205	ENST00000550075	MLH3	Q9UHC1	1453 aa		40.57	■■■■■ 4.08
CPSF6-205	ENST00000550075	KDM4F	A0A1W2PPD8	638 aa		40.56	■■■■■ 4.08
CPSF6-205	ENST00000550075	MYT1L	Q9UL68	1186 aa		40.55	■■■■■ 4.08
CPSF6-205	ENST00000550075	CAMSAP2	Q08AD1	1489 aa		40.51	■■■■■ 4.08
CPSF6-205	ENST00000550075	ATP10A	O60312	1499 aa		40.51	■■■■■ 4.07
CPSF6-205	ENST00000550075	MYOM3	Q5VTT5	1437 aa		40.5	■■■■■ 4.07
CPSF6-205	ENST00000550075	HNRNPM	P52272	730 aa	Known RBP eCLIP	40.5	■■■■■ 4.07
CPSF6-205	ENST00000550075	C9orf84	Q5VXU9	1444 aa		40.5	■■■■■ 4.07
CPSF6-205	ENST00000550075	ARID4B	Q4LE39	1312 aa	Predicted RBP	40.49	■■■■■ 4.07
CPSF6-205	ENST00000550075	DIP2C	Q9Y2E4	1556 aa		40.47	■■■■■ 4.07
CPSF6-205	ENST00000550075	ZNF644	Q9H582	1327 aa	Predicted RBP	40.46	■■■■■ 4.07
CPSF6-205	ENST00000550075	ABCA6	Q8N139	1617 aa		40.45	■■■■■ 4.07
CPSF6-205	ENST00000550075	MIA2	Q96PC5	1412 aa		40.45	■■■■■ 4.07
CPSF6-205	ENST00000550075	KIDINS220	Q9ULH0	1771 aa		40.44	■■■■■ 4.06
CPSF6-205	ENST00000550075	SPAG9	O60271	1321 aa	Known RBP	40.43	■■■■■ 4.06
CPSF6-205	ENST00000550075	BCORL1	Q5H9F3	1711 aa		40.43	■■■■■ 4.06
CPSF6-205	ENST00000550075	MBD5	Q9P267	1494 aa		40.42	■■■■■ 4.06
CPSF6-205	ENST00000550075	RERE	Q9P2R6	1566 aa		40.4	■■■■■ 4.06
CPSF6-205	ENST00000550075	INO80	Q9ULG1	1556 aa	Predicted RBP	40.4	■■■■■ 4.06
CPSF6-205	ENST00000550075	ATP7A	Q04656	1500 aa		40.4	■■■■■ 4.06
CPSF6-205	ENST00000550075	CCDC141	Q6ZP82	1450 aa		40.39	■■■■■ 4.06
CPSF6-205	ENST00000550075	ADAMTSL3	P82987	1691 aa		40.37	■■■■■ 4.05
CPSF6-205	ENST00000550075	SIGLEC1	Q9BZZ2	1709 aa		40.36	■■■■■ 4.05
CPSF6-205	ENST00000550075	ARHGEF5	Q12774	1597 aa		40.35	■■■■■ 4.05
CPSF6-205	ENST00000550075	RSPH4A	Q5TD94	716 aa		40.34	■■■■■ 4.05
CPSF6-205	ENST00000550075	MADD	Q8WXG6	1647 aa		40.27	■■■■■ 4.04
CPSF6-205	ENST00000550075	RTEL1-TNFRSF6B	F6WH68	1400 aa		40.26	■■■■■ 4.04
CPSF6-205	ENST00000550075	PTPN23	Q9H3S7	1636 aa		40.26	■■■■■ 4.04
CPSF6-205	ENST00000550075	FGD6	Q6ZV73	1430 aa		40.25	■■■■■ 4.03
CPSF6-205	ENST00000550075	AGL	P35573	1532 aa		40.25	■■■■■ 4.03
CPSF6-205	ENST00000550075	ADGB	Q8N7X0	1667 aa		40.23	■■■■■ 4.03
CPSF6-205	ENST00000550075	TSPY4	P0CV99	314 aa		40.17	■■■■■ 4.02
CPSF6-205	ENST00000550075	TSPY10	P0CW01	314 aa		40.17	■■■■■ 4.02
CPSF6-205	ENST00000550075	A2M	P01023	1474 aa		40.17	■■■■■ 4.02
CPSF6-205	ENST00000550075	TCOF1	Q13428	1488 aa	Known RBP	40.17	■■■■■ 4.02
CPSF6-205	ENST00000550075	FER1L4	A9Z1Z3	1794 aa		40.17	■■■■■ 4.02
CPSF6-205	ENST00000550075	RIMS1	Q86UR5	1692 aa	Known RBP	40.16	■■■■■ 4.02
CPSF6-205	ENST00000550075	MLEC	Q14165	292 aa		40.16	■■■■■ 4.02
CPSF6-205	ENST00000550075	PLXNC1	O60486	1568 aa		40.15	■■■■■ 4.02
CPSF6-205	ENST00000550075	MAST1	Q9Y2H9	1570 aa		40.14	■■■■■ 4.02
CPSF6-205	ENST00000550075	PTPRM	P28827	1452 aa		40.13	■■■■■ 4.01
CPSF6-205	ENST00000550075	CROCC2	H7BZ55	1655 aa		40.08	■■■■■ 4.01
CPSF6-205	ENST00000550075	DNMT1	P26358	1616 aa	Known RBP	40.06	■■■■■ 4
CPSF6-205	ENST00000550075	SHANK2	Q9UPX8	1470 aa		40.06	■■■■■ 4
CPSF6-205	ENST00000550075	DHX29	Q7Z478	1369 aa	Known RBP	40	■■■■□ 3.99
CPSF6-205	ENST00000550075	DAPK1	P53355	1430 aa		39.99	■■■■□ 3.99
CPSF6-205	ENST00000550075	ABCC5	O15440	1437 aa		39.99	■■■■□ 3.99
CPSF6-205	ENST00000550075	ESF1	Q9H501	851 aa	Known RBP	39.96	■■■■□ 3.99
CPSF6-205	ENST00000550075	FAM50A	Q14320	339 aa	Known RBP	39.94	■■■■□ 3.98
CPSF6-205	ENST00000550075	PPARGC1B	Q86YN6	1023 aa	Known RBP	39.94	■■■■□ 3.98
CPSF6-205	ENST00000550075	CNTLN	Q9NXG0	1405 aa		39.91	■■■■□ 3.98
CPSF6-205	ENST00000550075	DUOX2	Q9NRD8	1548 aa		39.86	■■■■□ 3.97
CPSF6-205	ENST00000550075	EIF2AK4	Q9P2K8	1649 aa	Known RBP	39.84	■■■■□ 3.97
CPSF6-205	ENST00000550075	MROH2A	A6NES4	1674 aa		39.83	■■■■□ 3.97
CPSF6-205	ENST00000550075	GGT6	Q6P531	493 aa		39.82	■■■■□ 3.97
CPSF6-205	ENST00000550075	KIF15	Q9NS87	1388 aa		39.82	■■■■□ 3.96
CPSF6-205	ENST00000550075	KIF3B	O15066	747 aa		39.81	■■■■□ 3.96
CPSF6-205	ENST00000550075	PPP6R1	Q9UPN7	881 aa		39.81	■■■■□ 3.96
CPSF6-205	ENST00000550075	PLPPR3	Q6T4P5	718 aa		39.8	■■■■□ 3.96
CPSF6-205	ENST00000550075	ANKRD30A	Q9BXX3	1397 aa		39.8	■■■■□ 3.96
CPSF6-205	ENST00000550075	FAM135A	Q9P2D6	1515 aa		39.8	■■■■□ 3.96
CPSF6-205	ENST00000550075	C3	P01024	1663 aa		39.77	■■■■□ 3.96
CPSF6-205	ENST00000550075	CLTC	Q00610	1675 aa	Known RBP	39.76	■■■■□ 3.96
CPSF6-205	ENST00000550075	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	39.76	■■■■□ 3.96
CPSF6-205	ENST00000550075	ADGRL2	O95490	1459 aa		39.75	■■■■□ 3.95
CPSF6-205	ENST00000550075	RNF17	Q9BXT8	1623 aa	Known RBP	39.75	■■■■□ 3.95

Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms