RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ARHGAP5Q13017 1502 aa26.42■■□□□ 1.82
VPS29-207ENST00000549970 POGZQ7Z3K3 1410 aa26.41■■□□□ 1.82
VPS29-207ENST00000549970 ADAMTSL3P82987 1691 aa26.41■■□□□ 1.82
VPS29-207ENST00000549970 ZFYVE16Q7Z3T8 1539 aa26.4■■□□□ 1.82
VPS29-207ENST00000549970 BCORL1Q5H9F3 1711 aa26.39■■□□□ 1.81
VPS29-207ENST00000549970 YEATS2Q9ULM3 1422 aa26.39■■□□□ 1.81
VPS29-207ENST00000549970 MAGI2Q86UL8 1455 aa26.36■■□□□ 1.81
VPS29-207ENST00000549970 HECW2Q9P2P5 1572 aa26.35■■□□□ 1.81
VPS29-207ENST00000549970 CDC42BPBQ9Y5S2 1711 aa26.35■■□□□ 1.81
VPS29-207ENST00000549970 PREX2Q70Z35 1606 aa26.32■■□□□ 1.8
VPS29-207ENST00000549970 MADDQ8WXG6 1647 aa26.32■■□□□ 1.8
VPS29-207ENST00000549970 PTPRMP28827 1452 aa26.32■■□□□ 1.8
VPS29-207ENST00000549970 CEP162Q5TB80 1403 aa26.31■■□□□ 1.8
VPS29-207ENST00000549970 ZNF518AQ6AHZ1 1483 aa26.3■■□□□ 1.8
VPS29-207ENST00000549970 SIGLEC1Q9BZZ2 1709 aa26.29■■□□□ 1.8
VPS29-207ENST00000549970 AFAP1Q8N556 730 aa26.27■■□□□ 1.8
VPS29-207ENST00000549970 CDC42BPAQ5VT25 1732 aa26.27■■□□□ 1.8
VPS29-207ENST00000549970 RIMS1Q86UR5 1692 aaKnown RBP26.25■■□□□ 1.79
VPS29-207ENST00000549970 KDM5CP41229 1560 aa26.24■■□□□ 1.79
VPS29-207ENST00000549970 ATP10AO60312 1499 aa26.24■■□□□ 1.79
VPS29-207ENST00000549970 ABCC1P33527 1531 aa26.24■■□□□ 1.79
VPS29-207ENST00000549970 MLECQ14165 292 aa26.23■■□□□ 1.79
VPS29-207ENST00000549970 MYT1LQ9UL68 1186 aa26.23■■□□□ 1.79
VPS29-207ENST00000549970 C9orf84Q5VXU9 1444 aa26.22■■□□□ 1.79
VPS29-207ENST00000549970 ARHGEF12Q9NZN5 1544 aa26.21■■□□□ 1.79
VPS29-207ENST00000549970 MTUS2Q5JR59 1369 aa26.2■■□□□ 1.79
VPS29-207ENST00000549970 ITSN2Q9NZM3 1697 aa26.2■■□□□ 1.78
VPS29-207ENST00000549970 TRAPPC8Q9Y2L5 1435 aa26.2■■□□□ 1.78
VPS29-207ENST00000549970 ZNF777Q9ULD5 760 aaPredicted RBP26.19■■□□□ 1.78
VPS29-207ENST00000549970 LOC105371045A0A1W2PR82 267 aa26.18■■□□□ 1.78
VPS29-207ENST00000549970 GPATCH8Q9UKJ3 1502 aaKnown RBP26.18■■□□□ 1.78
VPS29-207ENST00000549970 PLPPR3Q6T4P5 718 aa26.16■■□□□ 1.78
VPS29-207ENST00000549970 DIP2CQ9Y2E4 1556 aa26.15■■□□□ 1.78
VPS29-207ENST00000549970 CCNB3Q8WWL7 1395 aa26.14■■□□□ 1.78
VPS29-207ENST00000549970 MLH3Q9UHC1 1453 aa26.14■■□□□ 1.78
VPS29-207ENST00000549970 SAMD9LQ8IVG5 1584 aa26.14■■□□□ 1.78
VPS29-207ENST00000549970 FER1L4A9Z1Z3 1794 aa26.14■■□□□ 1.78
VPS29-207ENST00000549970 ABCA6Q8N139 1617 aa26.13■■□□□ 1.77
VPS29-207ENST00000549970 EHBP1L1Q8N3D4 1523 aa26.12■■□□□ 1.77
VPS29-207ENST00000549970 SYCP2Q9BX26 1530 aa26.11■■□□□ 1.77
VPS29-207ENST00000549970 CFDP1Q9UEE9 299 aaPredicted RBP26.11■■□□□ 1.77
VPS29-207ENST00000549970 HNRNPMP52272 730 aaKnown RBP eCLIP26.07■■□□□ 1.76
VPS29-207ENST00000549970 KIDINS220Q9ULH0 1771 aa26.07■■□□□ 1.76
VPS29-207ENST00000549970 REREQ9P2R6 1566 aa26.07■■□□□ 1.76
VPS29-207ENST00000549970 TIAM1Q13009 1591 aa26.05■■□□□ 1.76
VPS29-207ENST00000549970 LMTK3Q96Q04 1460 aa26.04■■□□□ 1.76
VPS29-207ENST00000549970 PLEKHH2Q8IVE3 1493 aa26.03■■□□□ 1.76
VPS29-207ENST00000549970 KIAA1107Q9UPP5 1409 aa26.02■■□□□ 1.76
VPS29-207ENST00000549970 SPAG9O60271 1321 aaKnown RBP26.01■■□□□ 1.75
VPS29-207ENST00000549970 VPS8Q8N3P4 1428 aa26.01■■□□□ 1.75
VPS29-207ENST00000549970 AGLP35573 1532 aa25.98■■□□□ 1.75
VPS29-207ENST00000549970 ZNF644Q9H582 1327 aaPredicted RBP25.97■■□□□ 1.75
VPS29-207ENST00000549970 SUPT6HQ7KZ85 1726 aaKnown RBP25.97■■□□□ 1.75
VPS29-207ENST00000549970 CEBPAP49715 358 aaPredicted RBP25.96■■□□□ 1.75
VPS29-207ENST00000549970 NCOA2Q15596 1464 aa25.96■■□□□ 1.75
VPS29-207ENST00000549970 ATP7AQ04656 1500 aa25.95■■□□□ 1.74
VPS29-207ENST00000549970 HSPA2P54652 639 aa25.94■■□□□ 1.74
VPS29-207ENST00000549970 INO80Q9ULG1 1556 aaPredicted RBP25.93■■□□□ 1.74
VPS29-207ENST00000549970 ESF1Q9H501 851 aaKnown RBP25.91■■□□□ 1.74
VPS29-207ENST00000549970 MBD5Q9P267 1494 aa25.89■■□□□ 1.73
VPS29-207ENST00000549970 LRRC9Q6ZRR7 1453 aa25.88■■□□□ 1.73
VPS29-207ENST00000549970 A2MP01023 1474 aa25.86■■□□□ 1.73
VPS29-207ENST00000549970 PREX1Q8TCU6 1659 aa25.86■■□□□ 1.73
VPS29-207ENST00000549970 C3P01024 1663 aa25.85■■□□□ 1.73
VPS29-207ENST00000549970 ILDR1Q86SU0 546 aaPredicted RBP25.85■■□□□ 1.73
VPS29-207ENST00000549970 CAMSAP2Q08AD1 1489 aa25.85■■□□□ 1.73
VPS29-207ENST00000549970 PLXNC1O60486 1568 aa25.84■■□□□ 1.73
VPS29-207ENST00000549970 CNTLNQ9NXG0 1405 aa25.81■■□□□ 1.72
VPS29-207ENST00000549970 ADGBQ8N7X0 1667 aa25.81■■□□□ 1.72
VPS29-207ENST00000549970 KANK4Q5T7N3 995 aaPredicted RBP25.81■■□□□ 1.72
VPS29-207ENST00000549970 MAP3K1Q13233 1512 aa25.81■■□□□ 1.72
VPS29-207ENST00000549970 CCDC141Q6ZP82 1450 aa25.8■■□□□ 1.72
VPS29-207ENST00000549970 SETD1BQ9UPS6 1966 aaKnown RBP25.79■■□□□ 1.72
VPS29-207ENST00000549970 RTEL1-TNFRSF6BF6WH68 1400 aa25.79■■□□□ 1.72
VPS29-207ENST00000549970 UHRF1BP1Q6BDS2 1440 aa25.79■■□□□ 1.72
VPS29-207ENST00000549970 GGT6Q6P531 493 aa25.76■■□□□ 1.71
VPS29-207ENST00000549970 MROH2AA6NES4 1674 aa25.74■■□□□ 1.71
VPS29-207ENST00000549970 RSPH4AQ5TD94 716 aa25.74■■□□□ 1.71
VPS29-207ENST00000549970 CLTCQ00610 1675 aaKnown RBP25.73■■□□□ 1.71
VPS29-207ENST00000549970 ZMYM3Q14202 1370 aa25.72■■□□□ 1.71
VPS29-207ENST00000549970 ARHGEF5Q12774 1597 aa25.72■■□□□ 1.71
VPS29-207ENST00000549970 DHX29Q7Z478 1369 aaKnown RBP25.7■■□□□ 1.71
VPS29-207ENST00000549970 APLP2Q06481 763 aa25.7■■□□□ 1.7
VPS29-207ENST00000549970 MYOM3Q5VTT5 1437 aa25.69■■□□□ 1.7
VPS29-207ENST00000549970 TSPY4P0CV99 314 aa25.68■■□□□ 1.7
VPS29-207ENST00000549970 TSPY10P0CW01 314 aa25.68■■□□□ 1.7
VPS29-207ENST00000549970 NPATQ14207 1427 aa25.65■■□□□ 1.7
VPS29-207ENST00000549970 MIA2Q96PC5 1412 aa25.65■■□□□ 1.7
VPS29-207ENST00000549970 KIF3BO15066 747 aa25.64■■□□□ 1.7
VPS29-207ENST00000549970 PPP6R1Q9UPN7 881 aa25.64■■□□□ 1.7
VPS29-207ENST00000549970 STRCQ7RTU9 1775 aa25.64■■□□□ 1.69
VPS29-207ENST00000549970 FBXO41Q8TF61 875 aa25.59■■□□□ 1.69
VPS29-207ENST00000549970 PTPRKQ15262 1439 aa25.59■■□□□ 1.69
VPS29-207ENST00000549970 MAST1Q9Y2H9 1570 aa25.59■■□□□ 1.69
VPS29-207ENST00000549970 DMRT2Q9Y5R5 561 aa25.57■■□□□ 1.68
VPS29-207ENST00000549970 MYO3AQ8NEV4 1616 aa25.55■■□□□ 1.68
VPS29-207ENST00000549970 KDM5DQ9BY66 1539 aa25.54■■□□□ 1.68
VPS29-207ENST00000549970 PTPN23Q9H3S7 1636 aa25.54■■□□□ 1.68
VPS29-207ENST00000549970 WASHC2CQ9Y4E1 1318 aa25.52■■□□□ 1.68
VPS29-207ENST00000549970 NCOA1Q15788 1441 aa25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms