RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 DAPK1P53355 1430 aa15.92■□□□□ 0.14
CUX1-212ENST00000547394 MPHOSPH9Q99550 1183 aa15.91■□□□□ 0.14
CUX1-212ENST00000547394 CENPBP07199 599 aaPredicted RBP15.9■□□□□ 0.14
CUX1-212ENST00000547394 ATP10BO94823 1461 aa15.9■□□□□ 0.14
CUX1-212ENST00000547394 KCNH8Q96L42 1107 aa15.89■□□□□ 0.13
CUX1-212ENST00000547394 CHD1O14646 1710 aa15.89■□□□□ 0.13
CUX1-212ENST00000547394 ERCC6L2Q5T890 1561 aa15.89■□□□□ 0.13
CUX1-212ENST00000547394 DENND4BO75064 1496 aaPredicted RBP15.88■□□□□ 0.13
CUX1-212ENST00000547394 GPATCH8Q9UKJ3 1502 aaKnown RBP15.88■□□□□ 0.13
CUX1-212ENST00000547394 GTF3C3Q9Y5Q9 886 aa15.88■□□□□ 0.13
CUX1-212ENST00000547394 HNRNPMP52272 730 aaKnown RBP eCLIP15.87■□□□□ 0.139e-7■■■□□ 19.2
CUX1-212ENST00000547394 CAMSAP2Q08AD1 1489 aa15.86■□□□□ 0.13
CUX1-212ENST00000547394 SLC4A1APQ9BWU0 796 aaKnown RBP15.85■□□□□ 0.13
CUX1-212ENST00000547394 ABCA8O94911 1581 aa15.84■□□□□ 0.13
CUX1-212ENST00000547394 L3MBTL2Q969R5 705 aa15.8■□□□□ 0.12
CUX1-212ENST00000547394 DNMT1P26358 1616 aaKnown RBP15.8■□□□□ 0.12
CUX1-212ENST00000547394 GCC2Q8IWJ2 1684 aa15.79■□□□□ 0.12
CUX1-212ENST00000547394 AKNAQ7Z591 1439 aa15.79■□□□□ 0.12
CUX1-212ENST00000547394 TIMELESSQ9UNS1 1208 aa15.78■□□□□ 0.12
CUX1-212ENST00000547394 NCOA1Q15788 1441 aa15.76■□□□□ 0.11
CUX1-212ENST00000547394 ZNF326Q5BKZ1 582 aaKnown RBP15.76■□□□□ 0.11
CUX1-212ENST00000547394 ROCK1Q13464 1354 aa15.75■□□□□ 0.11
CUX1-212ENST00000547394 ABCC10Q5T3U5 1492 aa15.75■□□□□ 0.11
CUX1-212ENST00000547394 KDM5BQ9UGL1 1544 aa15.74■□□□□ 0.11
CUX1-212ENST00000547394 TSPY4P0CV99 314 aa15.73■□□□□ 0.11
CUX1-212ENST00000547394 TSPY10P0CW01 314 aa15.73■□□□□ 0.11
CUX1-212ENST00000547394 PKD2Q13563 968 aa15.73■□□□□ 0.11
CUX1-212ENST00000547394 CDC42BPAQ5VT25 1732 aa15.72■□□□□ 0.11
CUX1-212ENST00000547394 NBPF8Q3BBV2 869 aa15.72■□□□□ 0.11
CUX1-212ENST00000547394 HSPA5P11021 654 aaKnown RBP15.71■□□□□ 0.11
CUX1-212ENST00000547394 ANKRD30BQ9BXX2 1392 aa15.71■□□□□ 0.11
CUX1-212ENST00000547394 ANKRD30AQ9BXX3 1397 aa15.71■□□□□ 0.11
CUX1-212ENST00000547394 ITSN2Q9NZM3 1697 aa15.71■□□□□ 0.11
CUX1-212ENST00000547394 C9orf84Q5VXU9 1444 aa15.7■□□□□ 0.1
CUX1-212ENST00000547394 ADCY10Q96PN6 1610 aa15.7■□□□□ 0.1
CUX1-212ENST00000547394 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.69■□□□□ 0.11e-6■■□□□ 13.7
CUX1-212ENST00000547394 ANKRD50Q9ULJ7 1429 aa15.69■□□□□ 0.1
CUX1-212ENST00000547394 NUP155O75694 1391 aa15.69■□□□□ 0.1
CUX1-212ENST00000547394 PZPP20742 1482 aa15.68■□□□□ 0.1
CUX1-212ENST00000547394 PELP1Q8IZL8 1130 aaKnown RBP15.67■□□□□ 0.1
CUX1-212ENST00000547394 CNGB1Q14028 1251 aaPredicted RBP15.67■□□□□ 0.1
CUX1-212ENST00000547394 KIF15Q9NS87 1388 aa15.66■□□□□ 0.1
CUX1-212ENST00000547394 TTC37Q6PGP7 1564 aa15.65■□□□□ 0.1
CUX1-212ENST00000547394 SHROOM2Q13796 1616 aa15.65■□□□□ 0.1
CUX1-212ENST00000547394 C11orf95C9JLR9 678 aaPredicted RBP15.64■□□□□ 0.09
CUX1-212ENST00000547394 ARHGAP5Q13017 1502 aa15.64■□□□□ 0.09
CUX1-212ENST00000547394 KDM2AQ9Y2K7 1162 aa15.63■□□□□ 0.09
CUX1-212ENST00000547394 MBD5Q9P267 1494 aa15.63■□□□□ 0.09
CUX1-212ENST00000547394 SAMD9LQ8IVG5 1584 aa15.62■□□□□ 0.09
CUX1-212ENST00000547394 WASHC2AQ641Q2 1341 aa15.62■□□□□ 0.09
CUX1-212ENST00000547394 ABCC2Q92887 1545 aa15.62■□□□□ 0.09
CUX1-212ENST00000547394 POLR3GLQ9BT43 218 aa15.62■□□□□ 0.09
CUX1-212ENST00000547394 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.62■□□□□ 0.097e-8■■■■■ 32
CUX1-212ENST00000547394 SYCP2Q9BX26 1530 aa15.62■□□□□ 0.09
CUX1-212ENST00000547394 EIF4G2P78344 907 aaKnown RBP eCLIP15.61■□□□□ 0.091e-6■■■■■ 32.2
CUX1-212ENST00000547394 RPRD2Q5VT52 1461 aaKnown RBP15.61■□□□□ 0.09
CUX1-212ENST00000547394 CDC42BPBQ9Y5S2 1711 aa15.61■□□□□ 0.09
CUX1-212ENST00000547394 ADGRL2O95490 1459 aa15.61■□□□□ 0.09
CUX1-212ENST00000547394 CROCC2H7BZ55 1655 aa15.6■□□□□ 0.09
CUX1-212ENST00000547394 ANP32CO43423 234 aa15.6■□□□□ 0.09
CUX1-212ENST00000547394 CLASP1Q7Z460 1538 aa15.59■□□□□ 0.09
CUX1-212ENST00000547394 ADGBQ8N7X0 1667 aa15.59■□□□□ 0.09
CUX1-212ENST00000547394 TEX14Q8IWB6 1497 aa15.58■□□□□ 0.09
CUX1-212ENST00000547394 KIAA1107Q9UPP5 1409 aa15.58■□□□□ 0.09
CUX1-212ENST00000547394 AFAP1Q8N556 730 aa15.58■□□□□ 0.08
CUX1-212ENST00000547394 CCDC141Q6ZP82 1450 aa15.57■□□□□ 0.08
CUX1-212ENST00000547394 RGL3Q3MIN7 710 aa15.57■□□□□ 0.08
CUX1-212ENST00000547394 ARHGEF12Q9NZN5 1544 aa15.55■□□□□ 0.08
CUX1-212ENST00000547394 PREX2Q70Z35 1606 aa15.55■□□□□ 0.08
CUX1-212ENST00000547394 MYT1LQ9UL68 1186 aa15.55■□□□□ 0.08
CUX1-212ENST00000547394 ZCCHC11Q5TAX3 1644 aaKnown RBP15.54■□□□□ 0.08
CUX1-212ENST00000547394 DCAF11Q8TEB1 546 aa15.53■□□□□ 0.08
CUX1-212ENST00000547394 SHANK2Q9UPX8 1470 aa15.53■□□□□ 0.08
CUX1-212ENST00000547394 EFCAB2Q5VUJ9 269 aa15.52■□□□□ 0.08
CUX1-212ENST00000547394 TRAPPC8Q9Y2L5 1435 aa15.51■□□□□ 0.07
CUX1-212ENST00000547394 PLEKHH2Q8IVE3 1493 aa15.51■□□□□ 0.07
CUX1-212ENST00000547394 CCDC184Q52MB2 194 aa15.49■□□□□ 0.07
CUX1-212ENST00000547394 ARHGEF5Q12774 1597 aa15.49■□□□□ 0.07
CUX1-212ENST00000547394 OSCARQ8IYS5 282 aa15.48■□□□□ 0.07
CUX1-212ENST00000547394 PLCH2O75038 1416 aa15.48■□□□□ 0.07
CUX1-212ENST00000547394 KIF7Q2M1P5 1343 aa15.47■□□□□ 0.07
CUX1-212ENST00000547394 MYO5CQ9NQX4 1742 aa15.47■□□□□ 0.07
CUX1-212ENST00000547394 RSPH4AQ5TD94 716 aa15.46■□□□□ 0.07
CUX1-212ENST00000547394 CCDC7Q96M83 1385 aa15.46■□□□□ 0.07
CUX1-212ENST00000547394 FAM135AQ9P2D6 1515 aa15.45■□□□□ 0.06
CUX1-212ENST00000547394 SENP3-EIF4A1A0A087X0R7 540 aa15.45■□□□□ 0.06
CUX1-212ENST00000547394 CARD11Q9BXL7 1154 aa15.45■□□□□ 0.06
CUX1-212ENST00000547394 SPAG9O60271 1321 aaKnown RBP15.45■□□□□ 0.06
CUX1-212ENST00000547394 USP47Q96K76 1375 aa15.44■□□□□ 0.06
CUX1-212ENST00000547394 UHRF1BP1LA0JNW5 1464 aa15.43■□□□□ 0.06
CUX1-212ENST00000547394 SPATA31E1Q6ZUB1 1445 aa15.41■□□□□ 0.06
CUX1-212ENST00000547394 NBPF1Q3BBV0 1214 aa15.41■□□□□ 0.06
CUX1-212ENST00000547394 CCER2I3L3R5 266 aa15.41■□□□□ 0.06
CUX1-212ENST00000547394 BCANQ96GW7 911 aa15.41■□□□□ 0.06
CUX1-212ENST00000547394 ASXL2Q76L83 1435 aa15.4■□□□□ 0.06
CUX1-212ENST00000547394 WDR7Q9Y4E6 1490 aa15.4■□□□□ 0.06
CUX1-212ENST00000547394 ST20-MTHFSA0A0A6YYL1 179 aa15.4■□□□□ 0.06
CUX1-212ENST00000547394 CCDC144AA2RUR9 1427 aa15.4■□□□□ 0.06
CUX1-212ENST00000547394 PLA2R1Q13018 1463 aa15.4■□□□□ 0.06
CUX1-212ENST00000547394 NPM1P06748 294 aaKnown RBP eCLIP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms