RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 RAPGEF3O95398 923 aa18.94■□□□□ 0.62
YBX3-217ENST00000546164 FRMPD1Q5SYB0 1578 aa18.93■□□□□ 0.62
YBX3-217ENST00000546164 ADGRL1O94910 1474 aa18.91■□□□□ 0.62
YBX3-217ENST00000546164 MTUS2Q5JR59 1369 aa18.9■□□□□ 0.62
YBX3-217ENST00000546164 ARHGAP5Q13017 1502 aa18.9■□□□□ 0.62
YBX3-217ENST00000546164 SCAPERQ9BY12 1400 aa18.89■□□□□ 0.61
YBX3-217ENST00000546164 RICTORQ6R327 1708 aa18.88■□□□□ 0.61
YBX3-217ENST00000546164 EHBP1L1Q8N3D4 1523 aa18.88■□□□□ 0.61
YBX3-217ENST00000546164 PREX2Q70Z35 1606 aa18.88■□□□□ 0.61
YBX3-217ENST00000546164 KDM4FA0A1W2PPD8 638 aa18.87■□□□□ 0.61
YBX3-217ENST00000546164 ZMYM4Q5VZL5 1548 aa18.87■□□□□ 0.61
YBX3-217ENST00000546164 POGZQ7Z3K3 1410 aa18.87■□□□□ 0.61
YBX3-217ENST00000546164 CDC42BPBQ9Y5S2 1711 aa18.86■□□□□ 0.61
YBX3-217ENST00000546164 GPATCH8Q9UKJ3 1502 aaKnown RBP18.85■□□□□ 0.61
YBX3-217ENST00000546164 MAGI2Q86UL8 1455 aa18.84■□□□□ 0.61
YBX3-217ENST00000546164 TIAM1Q13009 1591 aa18.84■□□□□ 0.61
YBX3-217ENST00000546164 MAP3K1Q13233 1512 aa18.83■□□□□ 0.6
YBX3-217ENST00000546164 CDC42BPAQ5VT25 1732 aa18.83■□□□□ 0.6
YBX3-217ENST00000546164 PLPPR3Q6T4P5 718 aa18.82■□□□□ 0.6
YBX3-217ENST00000546164 ARHGEF40Q8TER5 1519 aa18.82■□□□□ 0.6
YBX3-217ENST00000546164 ZNF518AQ6AHZ1 1483 aa18.81■□□□□ 0.6
YBX3-217ENST00000546164 CCNB3Q8WWL7 1395 aa18.81■□□□□ 0.6
YBX3-217ENST00000546164 ABCC1P33527 1531 aa18.8■□□□□ 0.6
YBX3-217ENST00000546164 KDM5CP41229 1560 aa18.78■□□□□ 0.6
YBX3-217ENST00000546164 ZFYVE16Q7Z3T8 1539 aa18.78■□□□□ 0.6
YBX3-217ENST00000546164 ARHGEF12Q9NZN5 1544 aa18.78■□□□□ 0.6
YBX3-217ENST00000546164 LRRC9Q6ZRR7 1453 aa18.77■□□□□ 0.6
YBX3-217ENST00000546164 YEATS2Q9ULM3 1422 aa18.77■□□□□ 0.6
YBX3-217ENST00000546164 CFDP1Q9UEE9 299 aaPredicted RBP18.77■□□□□ 0.6
YBX3-217ENST00000546164 NCOA2Q15596 1464 aa18.76■□□□□ 0.59
YBX3-217ENST00000546164 KIAA1107Q9UPP5 1409 aa18.75■□□□□ 0.59
YBX3-217ENST00000546164 AFAP1Q8N556 730 aa18.75■□□□□ 0.59
YBX3-217ENST00000546164 PLEKHH2Q8IVE3 1493 aa18.75■□□□□ 0.59
YBX3-217ENST00000546164 SAMD9LQ8IVG5 1584 aa18.75■□□□□ 0.59
YBX3-217ENST00000546164 TRAPPC8Q9Y2L5 1435 aa18.74■□□□□ 0.59
YBX3-217ENST00000546164 SUPT6HQ7KZ85 1726 aaKnown RBP18.74■□□□□ 0.59
YBX3-217ENST00000546164 MLH3Q9UHC1 1453 aa18.73■□□□□ 0.59
YBX3-217ENST00000546164 ITSN2Q9NZM3 1697 aa18.73■□□□□ 0.59
YBX3-217ENST00000546164 ZNF777Q9ULD5 760 aaPredicted RBP18.72■□□□□ 0.59
YBX3-217ENST00000546164 KANK4Q5T7N3 995 aaPredicted RBP18.71■□□□□ 0.59
YBX3-217ENST00000546164 ATP10AO60312 1499 aa18.71■□□□□ 0.59
YBX3-217ENST00000546164 HECW2Q9P2P5 1572 aa18.7■□□□□ 0.58
YBX3-217ENST00000546164 SYCP2Q9BX26 1530 aa18.69■□□□□ 0.58
YBX3-217ENST00000546164 C9orf84Q5VXU9 1444 aa18.68■□□□□ 0.58
YBX3-217ENST00000546164 ARID4BQ4LE39 1312 aaPredicted RBP18.68■□□□□ 0.58
YBX3-217ENST00000546164 HNRNPMP52272 730 aaKnown RBP eCLIP18.67■□□□□ 0.58
YBX3-217ENST00000546164 APLP2Q06481 763 aa18.67■□□□□ 0.58
YBX3-217ENST00000546164 ADAMTSL3P82987 1691 aa18.66■□□□□ 0.58
YBX3-217ENST00000546164 BCORL1Q5H9F3 1711 aa18.66■□□□□ 0.58
YBX3-217ENST00000546164 REREQ9P2R6 1566 aa18.65■□□□□ 0.58
YBX3-217ENST00000546164 DIP2CQ9Y2E4 1556 aa18.65■□□□□ 0.58
YBX3-217ENST00000546164 ZNF644Q9H582 1327 aaPredicted RBP18.65■□□□□ 0.58
YBX3-217ENST00000546164 MBD5Q9P267 1494 aa18.65■□□□□ 0.58
YBX3-217ENST00000546164 SIGLEC1Q9BZZ2 1709 aa18.63■□□□□ 0.57
YBX3-217ENST00000546164 SPAG9O60271 1321 aaKnown RBP18.63■□□□□ 0.57
YBX3-217ENST00000546164 KIDINS220Q9ULH0 1771 aa18.63■□□□□ 0.57
YBX3-217ENST00000546164 ABCA6Q8N139 1617 aa18.62■□□□□ 0.57
YBX3-217ENST00000546164 CAMSAP2Q08AD1 1489 aa18.61■□□□□ 0.57
YBX3-217ENST00000546164 MIA2Q96PC5 1412 aa18.61■□□□□ 0.57
YBX3-217ENST00000546164 MYT1LQ9UL68 1186 aa18.61■□□□□ 0.57
YBX3-217ENST00000546164 MYOM3Q5VTT5 1437 aa18.6■□□□□ 0.57
YBX3-217ENST00000546164 AGLP35573 1532 aa18.59■□□□□ 0.57
YBX3-217ENST00000546164 RSPH4AQ5TD94 716 aa18.59■□□□□ 0.57
YBX3-217ENST00000546164 INO80Q9ULG1 1556 aaPredicted RBP18.59■□□□□ 0.57
YBX3-217ENST00000546164 ATP7AQ04656 1500 aa18.59■□□□□ 0.57
YBX3-217ENST00000546164 PTPRMP28827 1452 aa18.58■□□□□ 0.57
YBX3-217ENST00000546164 MADDQ8WXG6 1647 aa18.58■□□□□ 0.56
YBX3-217ENST00000546164 RTEL1-TNFRSF6BF6WH68 1400 aa18.57■□□□□ 0.56
YBX3-217ENST00000546164 CCDC141Q6ZP82 1450 aa18.57■□□□□ 0.56
YBX3-217ENST00000546164 ARHGEF5Q12774 1597 aa18.55■□□□□ 0.56
YBX3-217ENST00000546164 MLECQ14165 292 aa18.53■□□□□ 0.56
YBX3-217ENST00000546164 PPP6R1Q9UPN7 881 aa18.53■□□□□ 0.56
YBX3-217ENST00000546164 PLXNC1O60486 1568 aa18.51■□□□□ 0.55
YBX3-217ENST00000546164 A2MP01023 1474 aa18.51■□□□□ 0.55
YBX3-217ENST00000546164 RIMS1Q86UR5 1692 aaKnown RBP18.49■□□□□ 0.55
YBX3-217ENST00000546164 FGD6Q6ZV73 1430 aa18.49■□□□□ 0.55
YBX3-217ENST00000546164 TSPY4P0CV99 314 aa18.48■□□□□ 0.55
YBX3-217ENST00000546164 TSPY10P0CW01 314 aa18.48■□□□□ 0.55
YBX3-217ENST00000546164 FER1L4A9Z1Z3 1794 aa18.47■□□□□ 0.55
YBX3-217ENST00000546164 ADGBQ8N7X0 1667 aa18.47■□□□□ 0.55
YBX3-217ENST00000546164 TCOF1Q13428 1488 aaKnown RBP18.46■□□□□ 0.55
YBX3-217ENST00000546164 MAST1Q9Y2H9 1570 aa18.46■□□□□ 0.55
YBX3-217ENST00000546164 DHX29Q7Z478 1369 aaKnown RBP18.45■□□□□ 0.54
YBX3-217ENST00000546164 PTPN23Q9H3S7 1636 aa18.45■□□□□ 0.54
YBX3-217ENST00000546164 CNTLNQ9NXG0 1405 aa18.42■□□□□ 0.54
YBX3-217ENST00000546164 ADRA2BP18089 450 aa18.42■□□□□ 0.54
YBX3-217ENST00000546164 ABCC5O15440 1437 aa18.41■□□□□ 0.54
YBX3-217ENST00000546164 SHANK2Q9UPX8 1470 aa18.41■□□□□ 0.54
YBX3-217ENST00000546164 ESF1Q9H501 851 aaKnown RBP18.39■□□□□ 0.53
YBX3-217ENST00000546164 DAPK1P53355 1430 aa18.38■□□□□ 0.53
YBX3-217ENST00000546164 DNMT1P26358 1616 aaKnown RBP18.38■□□□□ 0.53
YBX3-217ENST00000546164 LMTK3Q96Q04 1460 aa18.36■□□□□ 0.53
YBX3-217ENST00000546164 CEBPAP49715 358 aaPredicted RBP18.35■□□□□ 0.53
YBX3-217ENST00000546164 GGT6Q6P531 493 aa18.35■□□□□ 0.53
YBX3-217ENST00000546164 CROCC2H7BZ55 1655 aa18.34■□□□□ 0.53
YBX3-217ENST00000546164 KIF3BO15066 747 aa18.34■□□□□ 0.53
YBX3-217ENST00000546164 MROH2AA6NES4 1674 aa18.34■□□□□ 0.53
YBX3-217ENST00000546164 FAM135AQ9P2D6 1515 aa18.33■□□□□ 0.53
YBX3-217ENST00000546164 ZMYM3Q14202 1370 aa18.32■□□□□ 0.52
YBX3-217ENST00000546164 C3P01024 1663 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 452.6 ms