RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 FRMPD1Q5SYB0 1578 aa18.8■□□□□ 0.6
HDAC4-216ENST00000544989 MAGI2Q86UL8 1455 aa18.79■□□□□ 0.6
HDAC4-216ENST00000544989 SCAPERQ9BY12 1400 aa18.79■□□□□ 0.6
HDAC4-216ENST00000544989 MTUS2Q5JR59 1369 aa18.79■□□□□ 0.6
HDAC4-216ENST00000544989 RICTORQ6R327 1708 aa18.77■□□□□ 0.6
HDAC4-216ENST00000544989 POGZQ7Z3K3 1410 aa18.77■□□□□ 0.6
HDAC4-216ENST00000544989 ZMYM4Q5VZL5 1548 aa18.77■□□□□ 0.6
HDAC4-216ENST00000544989 VPS8Q8N3P4 1428 aa18.74■□□□□ 0.59
HDAC4-216ENST00000544989 ARHGEF40Q8TER5 1519 aa18.74■□□□□ 0.59
HDAC4-216ENST00000544989 PREX2Q70Z35 1606 aa18.74■□□□□ 0.59
HDAC4-216ENST00000544989 ADAMTSL3P82987 1691 aa18.74■□□□□ 0.59
HDAC4-216ENST00000544989 ZNF518AQ6AHZ1 1483 aa18.74■□□□□ 0.59
HDAC4-216ENST00000544989 EHBP1L1Q8N3D4 1523 aa18.73■□□□□ 0.59
HDAC4-216ENST00000544989 CDC42BPBQ9Y5S2 1711 aa18.71■□□□□ 0.59
HDAC4-216ENST00000544989 CCNB3Q8WWL7 1395 aa18.71■□□□□ 0.59
HDAC4-216ENST00000544989 ZFYVE16Q7Z3T8 1539 aa18.71■□□□□ 0.59
HDAC4-216ENST00000544989 PTPRMP28827 1452 aa18.69■□□□□ 0.58
HDAC4-216ENST00000544989 ARID4BQ4LE39 1312 aaPredicted RBP18.69■□□□□ 0.58
HDAC4-216ENST00000544989 GPATCH8Q9UKJ3 1502 aaKnown RBP18.69■□□□□ 0.58
HDAC4-216ENST00000544989 CDC42BPAQ5VT25 1732 aa18.69■□□□□ 0.58
HDAC4-216ENST00000544989 PLEKHH2Q8IVE3 1493 aa18.67■□□□□ 0.58
HDAC4-216ENST00000544989 CFDP1Q9UEE9 299 aaPredicted RBP18.67■□□□□ 0.58
HDAC4-216ENST00000544989 ABCC1P33527 1531 aa18.66■□□□□ 0.58
HDAC4-216ENST00000544989 KDM5CP41229 1560 aa18.66■□□□□ 0.58
HDAC4-216ENST00000544989 MAP3K1Q13233 1512 aa18.65■□□□□ 0.58
HDAC4-216ENST00000544989 TIAM1Q13009 1591 aa18.64■□□□□ 0.58
HDAC4-216ENST00000544989 AFAP1Q8N556 730 aa18.64■□□□□ 0.57
HDAC4-216ENST00000544989 YEATS2Q9ULM3 1422 aa18.64■□□□□ 0.57
HDAC4-216ENST00000544989 KIAA1107Q9UPP5 1409 aa18.64■□□□□ 0.57
HDAC4-216ENST00000544989 ATP10AO60312 1499 aa18.64■□□□□ 0.57
HDAC4-216ENST00000544989 ZNF777Q9ULD5 760 aaPredicted RBP18.63■□□□□ 0.57
HDAC4-216ENST00000544989 C9orf84Q5VXU9 1444 aa18.63■□□□□ 0.57
HDAC4-216ENST00000544989 MLH3Q9UHC1 1453 aa18.63■□□□□ 0.57
HDAC4-216ENST00000544989 MYT1LQ9UL68 1186 aa18.62■□□□□ 0.57
HDAC4-216ENST00000544989 SUPT6HQ7KZ85 1726 aaKnown RBP18.61■□□□□ 0.57
HDAC4-216ENST00000544989 ITSN2Q9NZM3 1697 aa18.61■□□□□ 0.57
HDAC4-216ENST00000544989 APLP2Q06481 763 aa18.61■□□□□ 0.57
HDAC4-216ENST00000544989 BCORL1Q5H9F3 1711 aa18.6■□□□□ 0.57
HDAC4-216ENST00000544989 LMTK3Q96Q04 1460 aa18.6■□□□□ 0.57
HDAC4-216ENST00000544989 ARHGEF12Q9NZN5 1544 aa18.59■□□□□ 0.57
HDAC4-216ENST00000544989 TRAPPC8Q9Y2L5 1435 aa18.59■□□□□ 0.57
HDAC4-216ENST00000544989 SAMD9LQ8IVG5 1584 aa18.59■□□□□ 0.57
HDAC4-216ENST00000544989 NCOA2Q15596 1464 aa18.58■□□□□ 0.57
HDAC4-216ENST00000544989 LRRC9Q6ZRR7 1453 aa18.58■□□□□ 0.57
HDAC4-216ENST00000544989 SYCP2Q9BX26 1530 aa18.57■□□□□ 0.56
HDAC4-216ENST00000544989 REREQ9P2R6 1566 aa18.55■□□□□ 0.56
HDAC4-216ENST00000544989 SPAG9O60271 1321 aaKnown RBP18.55■□□□□ 0.56
HDAC4-216ENST00000544989 HNRNPMP52272 730 aaKnown RBP eCLIP18.54■□□□□ 0.569e-7■■■■□ 22.9
HDAC4-216ENST00000544989 RSPH4AQ5TD94 716 aa18.54■□□□□ 0.56
HDAC4-216ENST00000544989 DIP2CQ9Y2E4 1556 aa18.53■□□□□ 0.56
HDAC4-216ENST00000544989 MADDQ8WXG6 1647 aa18.52■□□□□ 0.56
HDAC4-216ENST00000544989 AGLP35573 1532 aa18.49■□□□□ 0.55
HDAC4-216ENST00000544989 ABCA6Q8N139 1617 aa18.49■□□□□ 0.55
HDAC4-216ENST00000544989 KIDINS220Q9ULH0 1771 aa18.49■□□□□ 0.55
HDAC4-216ENST00000544989 MLECQ14165 292 aa18.48■□□□□ 0.55
HDAC4-216ENST00000544989 KANK4Q5T7N3 995 aaPredicted RBP18.48■□□□□ 0.55
HDAC4-216ENST00000544989 ATP7AQ04656 1500 aa18.48■□□□□ 0.55
HDAC4-216ENST00000544989 MBD5Q9P267 1494 aa18.47■□□□□ 0.55
HDAC4-216ENST00000544989 RTEL1-TNFRSF6BF6WH68 1400 aa18.47■□□□□ 0.55
HDAC4-216ENST00000544989 MIA2Q96PC5 1412 aa18.47■□□□□ 0.55
HDAC4-216ENST00000544989 ZNF644Q9H582 1327 aaPredicted RBP18.47■□□□□ 0.55
HDAC4-216ENST00000544989 SIGLEC1Q9BZZ2 1709 aa18.46■□□□□ 0.55
HDAC4-216ENST00000544989 CAMSAP2Q08AD1 1489 aa18.46■□□□□ 0.54
HDAC4-216ENST00000544989 CCDC141Q6ZP82 1450 aa18.46■□□□□ 0.54
HDAC4-216ENST00000544989 RIMS1Q86UR5 1692 aaKnown RBP18.45■□□□□ 0.54
HDAC4-216ENST00000544989 MYOM3Q5VTT5 1437 aa18.45■□□□□ 0.54
HDAC4-216ENST00000544989 INO80Q9ULG1 1556 aaPredicted RBP18.45■□□□□ 0.54
HDAC4-216ENST00000544989 ESF1Q9H501 851 aaKnown RBP18.44■□□□□ 0.54
HDAC4-216ENST00000544989 FER1L4A9Z1Z3 1794 aa18.44■□□□□ 0.54
HDAC4-216ENST00000544989 TSPY4P0CV99 314 aa18.42■□□□□ 0.54
HDAC4-216ENST00000544989 TSPY10P0CW01 314 aa18.42■□□□□ 0.54
HDAC4-216ENST00000544989 ARHGEF5Q12774 1597 aa18.42■□□□□ 0.54
HDAC4-216ENST00000544989 A2MP01023 1474 aa18.41■□□□□ 0.54
HDAC4-216ENST00000544989 CERKQ8TCT0 537 aa18.4■□□□□ 0.54
HDAC4-216ENST00000544989 CNTLNQ9NXG0 1405 aa18.4■□□□□ 0.54
HDAC4-216ENST00000544989 ADGBQ8N7X0 1667 aa18.38■□□□□ 0.53
HDAC4-216ENST00000544989 PPP6R1Q9UPN7 881 aa18.38■□□□□ 0.53
HDAC4-216ENST00000544989 PLXNC1O60486 1568 aa18.38■□□□□ 0.53
HDAC4-216ENST00000544989 DHX29Q7Z478 1369 aaKnown RBP18.36■□□□□ 0.53
HDAC4-216ENST00000544989 SOCS7O14512 581 aa18.34■□□□□ 0.53
HDAC4-216ENST00000544989 HSPA2P54652 639 aa18.33■□□□□ 0.52
HDAC4-216ENST00000544989 PLPPR3Q6T4P5 718 aa18.32■□□□□ 0.52
HDAC4-216ENST00000544989 MAST1Q9Y2H9 1570 aa18.31■□□□□ 0.52
HDAC4-216ENST00000544989 FGD6Q6ZV73 1430 aa18.31■□□□□ 0.52
HDAC4-216ENST00000544989 ILDR2Q71H61 639 aa18.3■□□□□ 0.52
HDAC4-216ENST00000544989 SETD1BQ9UPS6 1966 aaKnown RBP18.3■□□□□ 0.52
HDAC4-216ENST00000544989 GGT6Q6P531 493 aa18.29■□□□□ 0.52
HDAC4-216ENST00000544989 PTPN23Q9H3S7 1636 aa18.29■□□□□ 0.52
HDAC4-216ENST00000544989 TCOF1Q13428 1488 aaKnown RBP18.28■□□□□ 0.52
HDAC4-216ENST00000544989 SHANK2Q9UPX8 1470 aa18.28■□□□□ 0.52
HDAC4-216ENST00000544989 FAM135AQ9P2D6 1515 aa18.28■□□□□ 0.52
HDAC4-216ENST00000544989 MROH2AA6NES4 1674 aa18.28■□□□□ 0.52
HDAC4-216ENST00000544989 CEBPAP49715 358 aaPredicted RBP18.27■□□□□ 0.52
HDAC4-216ENST00000544989 KIF3BO15066 747 aa18.26■□□□□ 0.51
HDAC4-216ENST00000544989 STRCQ7RTU9 1775 aa18.26■□□□□ 0.51
HDAC4-216ENST00000544989 PREX1Q8TCU6 1659 aa18.25■□□□□ 0.51
HDAC4-216ENST00000544989 NPATQ14207 1427 aa18.25■□□□□ 0.51
HDAC4-216ENST00000544989 UHRF1BP1Q6BDS2 1440 aa18.25■□□□□ 0.51
HDAC4-216ENST00000544989 ZMYM3Q14202 1370 aa18.25■□□□□ 0.51
HDAC4-216ENST00000544989 C3P01024 1663 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms