RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 WDR43Q15061 677 aaKnown RBP eCLIP7.73□□□□□ -1.17
VPS50-220ENST00000544910 RGL3Q3MIN7 710 aa7.73□□□□□ -1.17
VPS50-220ENST00000544910 SALL2Q9Y467 1007 aaPredicted RBP7.73□□□□□ -1.17
VPS50-220ENST00000544910 NUP155O75694 1391 aa7.73□□□□□ -1.17
VPS50-220ENST00000544910 MIA2Q96PC5 1412 aa7.72□□□□□ -1.17
VPS50-220ENST00000544910 EIF5BO60841 1220 aaKnown RBP7.72□□□□□ -1.17
VPS50-220ENST00000544910 NPM1P06748 294 aaKnown RBP eCLIP7.72□□□□□ -1.17
VPS50-220ENST00000544910 DCAF11Q8TEB1 546 aa7.72□□□□□ -1.17
VPS50-220ENST00000544910 CHGAP10645 457 aaKnown RBP7.71□□□□□ -1.17
VPS50-220ENST00000544910 MAPKBP1O60336 1514 aa7.71□□□□□ -1.18
VPS50-220ENST00000544910 SNAPC4Q5SXM2 1469 aa7.71□□□□□ -1.18
VPS50-220ENST00000544910 EPRSP07814 1512 aaKnown RBP7.71□□□□□ -1.18
VPS50-220ENST00000544910 ROCK2O75116 1388 aaKnown RBP7.7□□□□□ -1.18
VPS50-220ENST00000544910 CDK13Q14004 1512 aaKnown RBP7.7□□□□□ -1.18
VPS50-220ENST00000544910 JPH4Q96JJ6 628 aa7.7□□□□□ -1.18
VPS50-220ENST00000544910 KIF21AQ7Z4S6 1674 aa7.7□□□□□ -1.18
VPS50-220ENST00000544910 NPM2Q86SE8 214 aaKnown RBP7.7□□□□□ -1.18
VPS50-220ENST00000544910 ANP32EQ9BTT0 268 aa7.69□□□□□ -1.18
VPS50-220ENST00000544910 CDCA8Q53HL2 280 aa7.69□□□□□ -1.18
VPS50-220ENST00000544910 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.69□□□□□ -1.18
VPS50-220ENST00000544910 ERICH6BQ5W0A0 696 aa7.69□□□□□ -1.18
VPS50-220ENST00000544910 CNTLNQ9NXG0 1405 aa7.69□□□□□ -1.18
VPS50-220ENST00000544910 DAPK1P53355 1430 aa7.68□□□□□ -1.18
VPS50-220ENST00000544910 HNRNPMP52272 730 aaKnown RBP eCLIP7.68□□□□□ -1.18
VPS50-220ENST00000544910 KANK1Q14678 1352 aa7.68□□□□□ -1.18
VPS50-220ENST00000544910 NAIPQ13075 1403 aa7.68□□□□□ -1.18
VPS50-220ENST00000544910 TSHZ2Q9NRE2 1034 aa7.68□□□□□ -1.18
VPS50-220ENST00000544910 KTN1Q86UP2 1357 aaKnown RBP7.67□□□□□ -1.18
VPS50-220ENST00000544910 TMF1P82094 1093 aa7.67□□□□□ -1.18
VPS50-220ENST00000544910 RSPH4AQ5TD94 716 aa7.67□□□□□ -1.18
VPS50-220ENST00000544910 KNSTRNQ9Y448 316 aa7.67□□□□□ -1.18
VPS50-220ENST00000544910 KIAA0586Q9BVV6 1533 aa7.66□□□□□ -1.18
VPS50-220ENST00000544910 UGGT2Q9NYU1 1516 aa7.66□□□□□ -1.18
VPS50-220ENST00000544910 RALBP1Q15311 655 aa7.66□□□□□ -1.18
VPS50-220ENST00000544910 ZNF644Q9H582 1327 aaPredicted RBP7.66□□□□□ -1.18
VPS50-220ENST00000544910 CC2D1BQ5T0F9 858 aaKnown RBP7.66□□□□□ -1.18
VPS50-220ENST00000544910 USP47Q96K76 1375 aa7.66□□□□□ -1.18
VPS50-220ENST00000544910 CCDC7Q96M83 1385 aa7.66□□□□□ -1.18
VPS50-220ENST00000544910 PBRM1Q86U86 1689 aa7.66□□□□□ -1.18
VPS50-220ENST00000544910 PTPRGP23470 1445 aa7.65□□□□□ -1.18
VPS50-220ENST00000544910 KIF15Q9NS87 1388 aa7.65□□□□□ -1.18
VPS50-220ENST00000544910 ROCK1Q13464 1354 aa7.65□□□□□ -1.18
VPS50-220ENST00000544910 SENP3-EIF4A1A0A087X0R7 540 aa7.65□□□□□ -1.19
VPS50-220ENST00000544910 NEFMP07197 916 aa7.65□□□□□ -1.19
VPS50-220ENST00000544910 ADAMTS12P58397 1594 aa7.64□□□□□ -1.19
VPS50-220ENST00000544910 TROQ12816 1431 aaPredicted RBP7.64□□□□□ -1.19
VPS50-220ENST00000544910 ABCA5Q8WWZ7 1642 aa7.64□□□□□ -1.19
VPS50-220ENST00000544910 ZBTB47Q9UFB7 747 aaPredicted RBP7.64□□□□□ -1.19
VPS50-220ENST00000544910 RBM19Q9Y4C8 960 aaKnown RBP7.64□□□□□ -1.19
VPS50-220ENST00000544910 CCDC144AA2RUR9 1427 aa7.64□□□□□ -1.19
VPS50-220ENST00000544910 PRKRIP1Q9H875 184 aaPredicted RBP7.64□□□□□ -1.19
VPS50-220ENST00000544910 B4GALNT3Q6L9W6 998 aa7.63□□□□□ -1.19
VPS50-220ENST00000544910 WASHC2AQ641Q2 1341 aa7.63□□□□□ -1.19
VPS50-220ENST00000544910 ANKRD50Q9ULJ7 1429 aa7.63□□□□□ -1.19
VPS50-220ENST00000544910 CAMSAP2Q08AD1 1489 aa7.63□□□□□ -1.19
VPS50-220ENST00000544910 PRG4Q92954 1404 aaPredicted RBP7.63□□□□□ -1.19
VPS50-220ENST00000544910 GRIN2AQ12879 1464 aa7.63□□□□□ -1.19
VPS50-220ENST00000544910 SYNJ2O15056 1496 aa7.63□□□□□ -1.19
VPS50-220ENST00000544910 SAMD9Q5K651 1589 aa7.62□□□□□ -1.19
VPS50-220ENST00000544910 RAPGEF6Q8TEU7 1601 aa7.62□□□□□ -1.19
VPS50-220ENST00000544910 STAG3Q9UJ98 1225 aa7.62□□□□□ -1.19
VPS50-220ENST00000544910 ARID4BQ4LE39 1312 aaPredicted RBP7.62□□□□□ -1.19
VPS50-220ENST00000544910 ZBED9Q6R2W3 1325 aa7.62□□□□□ -1.19
VPS50-220ENST00000544910 KIF14Q15058 1648 aa7.62□□□□□ -1.19
VPS50-220ENST00000544910 EFCAB2Q5VUJ9 269 aa7.62□□□□□ -1.19
VPS50-220ENST00000544910 NUDCQ9Y266 331 aa7.62□□□□□ -1.19
VPS50-220ENST00000544910 ANP32BQ92688 251 aaKnown RBP7.62□□□□□ -1.19
VPS50-220ENST00000544910 KIAA1107Q9UPP5 1409 aa7.62□□□□□ -1.19
VPS50-220ENST00000544910 KIF7Q2M1P5 1343 aa7.61□□□□□ -1.19
VPS50-220ENST00000544910 TCOF1Q13428 1488 aaKnown RBP7.61□□□□□ -1.19
VPS50-220ENST00000544910 MAGI1Q96QZ7 1491 aaPredicted RBP7.61□□□□□ -1.19
VPS50-220ENST00000544910 EIF3AQ14152 1382 aaKnown RBP7.61□□□□□ -1.19
VPS50-220ENST00000544910 MYBBP1AQ9BQG0 1328 aaKnown RBP7.61□□□□□ -1.19
VPS50-220ENST00000544910 ITSN2Q9NZM3 1697 aa7.61□□□□□ -1.19
VPS50-220ENST00000544910 ARHGAP5Q13017 1502 aa7.61□□□□□ -1.19
VPS50-220ENST00000544910 C9orf84Q5VXU9 1444 aa7.6□□□□□ -1.19
VPS50-220ENST00000544910 AKNAQ7Z591 1439 aa7.6□□□□□ -1.19
VPS50-220ENST00000544910 WDR62O43379 1518 aa7.6□□□□□ -1.19
VPS50-220ENST00000544910 ABCC5O15440 1437 aa7.6□□□□□ -1.19
VPS50-220ENST00000544910 SLC24A1O60721 1099 aa7.6□□□□□ -1.19
VPS50-220ENST00000544910 NBR1Q14596 966 aa7.6□□□□□ -1.19
VPS50-220ENST00000544910 PTPRKQ15262 1439 aa7.6□□□□□ -1.19
VPS50-220ENST00000544910 KIAA0556O60303 1618 aa7.59□□□□□ -1.19
VPS50-220ENST00000544910 DDRGK1Q96HY6 314 aa7.59□□□□□ -1.19
VPS50-220ENST00000544910 ST20-MTHFSA0A0A6YYL1 179 aa7.58□□□□□ -1.2
VPS50-220ENST00000544910 ZNF608Q9ULD9 1512 aaPredicted RBP7.58□□□□□ -1.2
VPS50-220ENST00000544910 CFAP53Q96M91 514 aa7.57□□□□□ -1.2
VPS50-220ENST00000544910 NOP58Q9Y2X3 529 aaKnown RBP7.57□□□□□ -1.2
VPS50-220ENST00000544910 SPAG9O60271 1321 aaKnown RBP7.57□□□□□ -1.2
VPS50-220ENST00000544910 ESF1Q9H501 851 aaKnown RBP7.57□□□□□ -1.2
VPS50-220ENST00000544910 GCC2Q8IWJ2 1684 aa7.57□□□□□ -1.2
VPS50-220ENST00000544910 NLRP13Q86W25 1043 aa7.57□□□□□ -1.2
VPS50-220ENST00000544910 UPF2Q9HAU5 1272 aaKnown RBP7.57□□□□□ -1.2
VPS50-220ENST00000544910 RCAN3Q9UKA8 241 aa7.57□□□□□ -1.2
VPS50-220ENST00000544910 ANKRD30BQ9BXX2 1392 aa7.56□□□□□ -1.2
VPS50-220ENST00000544910 PLB1Q6P1J6 1458 aa7.56□□□□□ -1.2
VPS50-220ENST00000544910 NBPF8Q3BBV2 869 aa7.56□□□□□ -1.2
VPS50-220ENST00000544910 BCL11AQ9H165 835 aa7.56□□□□□ -1.2
VPS50-220ENST00000544910 PLEKHH2Q8IVE3 1493 aa7.56□□□□□ -1.2
VPS50-220ENST00000544910 RPRD2Q5VT52 1461 aaKnown RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms