RNA–Protein interactions for RNA: ENST00000544484.5

CHD4-211, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2 BASIC

Gene CHD4, Length 6,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-211ENST00000544484 CDK11BP21127 795 aaKnown RBP16.47■□□□□ 0.23
CHD4-211ENST00000544484 CCER2I3L3R5 266 aa16.47■□□□□ 0.23
CHD4-211ENST00000544484 MS4A1P11836 297 aa16.46■□□□□ 0.23
CHD4-211ENST00000544484 ROCK2O75116 1388 aaKnown RBP16.46■□□□□ 0.23
CHD4-211ENST00000544484 WIZO95785 1651 aa16.46■□□□□ 0.23
CHD4-211ENST00000544484 ANP32EQ9BTT0 268 aa16.46■□□□□ 0.22
CHD4-211ENST00000544484 FMN1Q68DA7 1419 aa16.45■□□□□ 0.22
CHD4-211ENST00000544484 FHOD3Q2V2M9 1422 aa16.45■□□□□ 0.22
CHD4-211ENST00000544484 KIF3BO15066 747 aa16.45■□□□□ 0.22
CHD4-211ENST00000544484 ZRSR1Q15695 479 aaKnown RBP16.45■□□□□ 0.22
CHD4-211ENST00000544484 PTMAP06454 111 aaKnown RBP16.44■□□□□ 0.22
CHD4-211ENST00000544484 KTN1Q86UP2 1357 aaKnown RBP16.44■□□□□ 0.22
CHD4-211ENST00000544484 CHMP4BQ9H444 224 aaKnown RBP16.44■□□□□ 0.22
CHD4-211ENST00000544484 NUTM2DQ5VT03 806 aaPredicted RBP16.44■□□□□ 0.22
CHD4-211ENST00000544484 KCNJ4P48050 445 aa16.43■□□□□ 0.22
CHD4-211ENST00000544484 PAK3O75914 559 aaPredicted RBP16.43■□□□□ 0.22
CHD4-211ENST00000544484 HSP90AB1P08238 724 aaKnown RBP16.43■□□□□ 0.22
CHD4-211ENST00000544484 FGD1P98174 961 aa16.43■□□□□ 0.22
CHD4-211ENST00000544484 TULP1O00294 542 aaPredicted RBP16.42■□□□□ 0.22
CHD4-211ENST00000544484 U2AF1L5P0DN76 240 aaPredicted RBP16.42■□□□□ 0.22
CHD4-211ENST00000544484 U2AF1Q01081 240 aaKnown RBP eCLIP16.42■□□□□ 0.22
CHD4-211ENST00000544484 HDGFL2Q7Z4V5 671 aaPredicted RBP16.42■□□□□ 0.22
CHD4-211ENST00000544484 NOP58Q9Y2X3 529 aaKnown RBP16.42■□□□□ 0.22
CHD4-211ENST00000544484 APBB1O00213 710 aa16.42■□□□□ 0.22
CHD4-211ENST00000544484 ANKRD30AQ9BXX3 1397 aa16.42■□□□□ 0.22
CHD4-211ENST00000544484 L3MBTL2Q969R5 705 aa16.42■□□□□ 0.22
CHD4-211ENST00000544484 NAP1L2Q9ULW6 460 aaPredicted RBP16.42■□□□□ 0.22
CHD4-211ENST00000544484 RTF1Q92541 710 aaKnown RBP16.4■□□□□ 0.22
CHD4-211ENST00000544484 PLCB2Q00722 1185 aa16.4■□□□□ 0.22
CHD4-211ENST00000544484 SPRYD3Q8NCJ5 442 aa16.4■□□□□ 0.22
CHD4-211ENST00000544484 GLIPR1L2Q4G1C9 344 aa16.39■□□□□ 0.21
CHD4-211ENST00000544484 CADPSQ9ULU8 1353 aa16.37■□□□□ 0.21
CHD4-211ENST00000544484 RAPGEF2Q9Y4G8 1499 aa16.36■□□□□ 0.21
CHD4-211ENST00000544484 TOP2AP11388 1531 aaKnown RBP16.36■□□□□ 0.21
CHD4-211ENST00000544484 GOLGA2Q08379 1002 aa16.35■□□□□ 0.21
CHD4-211ENST00000544484 DNTTIP2Q5QJE6 756 aaKnown RBP16.35■□□□□ 0.21
CHD4-211ENST00000544484 RCAN3Q9UKA8 241 aa16.35■□□□□ 0.21
CHD4-211ENST00000544484 JPH4Q96JJ6 628 aa16.35■□□□□ 0.21
CHD4-211ENST00000544484 RTN4Q9NQC3 1192 aaKnown RBP16.34■□□□□ 0.21
CHD4-211ENST00000544484 SPAG9O60271 1321 aaKnown RBP16.33■□□□□ 0.2
CHD4-211ENST00000544484 RALBP1Q15311 655 aa16.33■□□□□ 0.2
CHD4-211ENST00000544484 HSCBQ8IWL3 235 aa16.32■□□□□ 0.2
CHD4-211ENST00000544484 NUTM2FA1L443 756 aa16.31■□□□□ 0.2
CHD4-211ENST00000544484 CCDC146Q8IYE0 955 aa16.31■□□□□ 0.2
CHD4-211ENST00000544484 ZNF330Q9Y3S2 320 aaPredicted RBP16.31■□□□□ 0.2
CHD4-211ENST00000544484 WASHC2CQ9Y4E1 1318 aa16.31■□□□□ 0.2
CHD4-211ENST00000544484 CSB-PGBD3P0DP91 1061 aa16.31■□□□□ 0.2
CHD4-211ENST00000544484 RUSC2Q8N2Y8 1516 aa16.31■□□□□ 0.2
CHD4-211ENST00000544484 ITPRIPQ8IWB1 547 aa16.3■□□□□ 0.2
CHD4-211ENST00000544484 RBM19Q9Y4C8 960 aaKnown RBP16.29■□□□□ 0.2
CHD4-211ENST00000544484 IPO8O15397 1037 aaKnown RBP16.29■□□□□ 0.2
CHD4-211ENST00000544484 TRAK1Q9UPV9 953 aa16.28■□□□□ 0.2
CHD4-211ENST00000544484 CLUAP1Q96AJ1 413 aa16.27■□□□□ 0.19
CHD4-211ENST00000544484 CCDC18Q5T9S5 1454 aa16.25■□□□□ 0.19
CHD4-211ENST00000544484 ATAD2BQ9ULI0 1458 aa16.25■□□□□ 0.19
CHD4-211ENST00000544484 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.25■□□□□ 0.19
CHD4-211ENST00000544484 GOLGA6L4A6NEF3 574 aa16.24■□□□□ 0.19
CHD4-211ENST00000544484 EIF3AQ14152 1382 aaKnown RBP16.24■□□□□ 0.19
CHD4-211ENST00000544484 ST20-MTHFSA0A0A6YYL1 179 aa16.24■□□□□ 0.19
CHD4-211ENST00000544484 TERF2IPQ9NYB0 399 aa16.24■□□□□ 0.19
CHD4-211ENST00000544484 MCCP23508 829 aa16.23■□□□□ 0.19
CHD4-211ENST00000544484 ERICH6BQ5W0A0 696 aa16.23■□□□□ 0.19
CHD4-211ENST00000544484 SMC4Q9NTJ3 1288 aa16.23■□□□□ 0.19
CHD4-211ENST00000544484 NGDNQ8NEJ9 315 aaKnown RBP16.22■□□□□ 0.19
CHD4-211ENST00000544484 CALD1Q05682 793 aaKnown RBP16.22■□□□□ 0.19
CHD4-211ENST00000544484 RSPH4AQ5TD94 716 aa16.22■□□□□ 0.19
CHD4-211ENST00000544484 LTV1Q96GA3 475 aaPredicted RBP16.22■□□□□ 0.19
CHD4-211ENST00000544484 NLRP13Q86W25 1043 aa16.22■□□□□ 0.19
CHD4-211ENST00000544484 RWDD1Q9H446 243 aaPredicted RBP16.21■□□□□ 0.19
CHD4-211ENST00000544484 NAP1L5Q96NT1 182 aaPredicted RBP16.21■□□□□ 0.19
CHD4-211ENST00000544484 RRP7AQ9Y3A4 280 aaKnown RBP16.2■□□□□ 0.18
CHD4-211ENST00000544484 SLKQ9H2G2 1235 aaPredicted RBP16.19■□□□□ 0.18
CHD4-211ENST00000544484 EID1Q9Y6B2 187 aa16.19■□□□□ 0.18
CHD4-211ENST00000544484 SLC4A10Q6U841 1118 aa16.19■□□□□ 0.18
CHD4-211ENST00000544484 STK31Q9BXU1 1019 aa16.18■□□□□ 0.18
CHD4-211ENST00000544484 KIAA1211Q6ZU35 1233 aa16.18■□□□□ 0.18
CHD4-211ENST00000544484 PANK3Q9H999 370 aa16.18■□□□□ 0.18
CHD4-211ENST00000544484 ISY1Q9ULR0 285 aaKnown RBP16.18■□□□□ 0.18
CHD4-211ENST00000544484 DHX57Q6P158 1386 aaKnown RBP16.18■□□□□ 0.18
CHD4-211ENST00000544484 FANCD2Q9BXW9 1451 aa16.17■□□□□ 0.18
CHD4-211ENST00000544484 AMPHP49418 695 aa16.16■□□□□ 0.18
CHD4-211ENST00000544484 CCDC144AA2RUR9 1427 aa16.15■□□□□ 0.18
CHD4-211ENST00000544484 CHMP3Q9Y3E7 222 aa16.15■□□□□ 0.18
CHD4-211ENST00000544484 MFAP1P55081 439 aaKnown RBP16.15■□□□□ 0.18
CHD4-211ENST00000544484 CCDC9Q9Y3X0 531 aaKnown RBP16.15■□□□□ 0.18
CHD4-211ENST00000544484 SMARCA4P51532 1647 aa16.15■□□□□ 0.18
CHD4-211ENST00000544484 CYB5RLQ6IPT4 315 aa16.14■□□□□ 0.17
CHD4-211ENST00000544484 CENPJQ9HC77 1338 aaPredicted RBP16.14■□□□□ 0.17
CHD4-211ENST00000544484 TCERG1O14776 1098 aaKnown RBP16.13■□□□□ 0.17
CHD4-211ENST00000544484 PTPRGP23470 1445 aa16.13■□□□□ 0.17
CHD4-211ENST00000544484 ELL2O00472 640 aaPredicted RBP16.13■□□□□ 0.17
CHD4-211ENST00000544484 GZF1Q9H116 711 aaPredicted RBP16.13■□□□□ 0.17
CHD4-211ENST00000544484 PMFBP1Q8TBY8 1022 aa16.12■□□□□ 0.17
CHD4-211ENST00000544484 BCL2L13Q9BXK5 485 aa16.12■□□□□ 0.17
CHD4-211ENST00000544484 TRIM6-TRIM34B2RNG4 842 aa16.11■□□□□ 0.17
CHD4-211ENST00000544484 CFAP44Q96MT7 982 aa16.11■□□□□ 0.17
CHD4-211ENST00000544484 DEKP35659 375 aaKnown RBP16.11■□□□□ 0.17
CHD4-211ENST00000544484 GOLGA6L6A8MZA4 724 aa16.1■□□□□ 0.17
CHD4-211ENST00000544484 GNL2Q13823 731 aaKnown RBP16.1■□□□□ 0.17
CHD4-211ENST00000544484 KIF15Q9NS87 1388 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms