RNA–Protein interactions for RNA: ENST00000544432.5

VAMP1-208, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 3

Gene VAMP1, Length 759 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-208ENST00000544432 MAGI2Q86UL8 1455 aa22.28■■□□□ 1.16
VAMP1-208ENST00000544432 POGZQ7Z3K3 1410 aa22.27■■□□□ 1.16
VAMP1-208ENST00000544432 ARHGAP5Q13017 1502 aa22.26■■□□□ 1.15
VAMP1-208ENST00000544432 ARHGEF40Q8TER5 1519 aa22.23■■□□□ 1.15
VAMP1-208ENST00000544432 MTUS2Q5JR59 1369 aa22.21■■□□□ 1.15
VAMP1-208ENST00000544432 PREX2Q70Z35 1606 aa22.2■■□□□ 1.15
VAMP1-208ENST00000544432 CDC42BPBQ9Y5S2 1711 aa22.2■■□□□ 1.14
VAMP1-208ENST00000544432 ZNF518AQ6AHZ1 1483 aa22.19■■□□□ 1.14
VAMP1-208ENST00000544432 ZFYVE16Q7Z3T8 1539 aa22.19■■□□□ 1.14
VAMP1-208ENST00000544432 GPATCH8Q9UKJ3 1502 aaKnown RBP22.17■■□□□ 1.14
VAMP1-208ENST00000544432 YEATS2Q9ULM3 1422 aa22.17■■□□□ 1.14
VAMP1-208ENST00000544432 ARID4BQ4LE39 1312 aaPredicted RBP22.16■■□□□ 1.14
VAMP1-208ENST00000544432 AFAP1Q8N556 730 aa22.16■■□□□ 1.14
VAMP1-208ENST00000544432 VPS8Q8N3P4 1428 aa22.15■■□□□ 1.14
VAMP1-208ENST00000544432 CDC42BPAQ5VT25 1732 aa22.14■■□□□ 1.14
VAMP1-208ENST00000544432 KDM5CP41229 1560 aa22.14■■□□□ 1.13
VAMP1-208ENST00000544432 ADAMTSL3P82987 1691 aa22.14■■□□□ 1.13
VAMP1-208ENST00000544432 CCNB3Q8WWL7 1395 aa22.13■■□□□ 1.13
VAMP1-208ENST00000544432 ABCC1P33527 1531 aa22.13■■□□□ 1.13
VAMP1-208ENST00000544432 ATP10AO60312 1499 aa22.13■■□□□ 1.13
VAMP1-208ENST00000544432 EHBP1L1Q8N3D4 1523 aa22.12■■□□□ 1.13
VAMP1-208ENST00000544432 ARHGEF12Q9NZN5 1544 aa22.12■■□□□ 1.13
VAMP1-208ENST00000544432 BCORL1Q5H9F3 1711 aa22.11■■□□□ 1.13
VAMP1-208ENST00000544432 CFDP1Q9UEE9 299 aaPredicted RBP22.11■■□□□ 1.13
VAMP1-208ENST00000544432 MLH3Q9UHC1 1453 aa22.1■■□□□ 1.13
VAMP1-208ENST00000544432 TRAPPC8Q9Y2L5 1435 aa22.1■■□□□ 1.13
VAMP1-208ENST00000544432 KIAA1107Q9UPP5 1409 aa22.09■■□□□ 1.13
VAMP1-208ENST00000544432 C9orf84Q5VXU9 1444 aa22.08■■□□□ 1.13
VAMP1-208ENST00000544432 ZNF777Q9ULD5 760 aaPredicted RBP22.08■■□□□ 1.13
VAMP1-208ENST00000544432 PLEKHH2Q8IVE3 1493 aa22.07■■□□□ 1.12
VAMP1-208ENST00000544432 PTPRMP28827 1452 aa22.06■■□□□ 1.12
VAMP1-208ENST00000544432 ITSN2Q9NZM3 1697 aa22.05■■□□□ 1.12
VAMP1-208ENST00000544432 TIAM1Q13009 1591 aa22.05■■□□□ 1.12
VAMP1-208ENST00000544432 SAMD9LQ8IVG5 1584 aa22.05■■□□□ 1.12
VAMP1-208ENST00000544432 MAP3K1Q13233 1512 aa22.05■■□□□ 1.12
VAMP1-208ENST00000544432 HECW2Q9P2P5 1572 aa22.04■■□□□ 1.12
VAMP1-208ENST00000544432 MYT1LQ9UL68 1186 aa22.03■■□□□ 1.12
VAMP1-208ENST00000544432 HNRNPMP52272 730 aaKnown RBP eCLIP22.02■■□□□ 1.12
VAMP1-208ENST00000544432 SIGLEC1Q9BZZ2 1709 aa22.02■■□□□ 1.12
VAMP1-208ENST00000544432 REREQ9P2R6 1566 aa22.01■■□□□ 1.11
VAMP1-208ENST00000544432 MADDQ8WXG6 1647 aa22.01■■□□□ 1.11
VAMP1-208ENST00000544432 SYCP2Q9BX26 1530 aa22.01■■□□□ 1.11
VAMP1-208ENST00000544432 DIP2CQ9Y2E4 1556 aa22■■□□□ 1.11
VAMP1-208ENST00000544432 NCOA2Q15596 1464 aa22■■□□□ 1.11
VAMP1-208ENST00000544432 LRRC9Q6ZRR7 1453 aa22■■□□□ 1.11
VAMP1-208ENST00000544432 SPAG9O60271 1321 aaKnown RBP21.99■■□□□ 1.11
VAMP1-208ENST00000544432 SUPT6HQ7KZ85 1726 aaKnown RBP21.98■■□□□ 1.11
VAMP1-208ENST00000544432 MLECQ14165 292 aa21.96■■□□□ 1.11
VAMP1-208ENST00000544432 ZNF644Q9H582 1327 aaPredicted RBP21.96■■□□□ 1.11
VAMP1-208ENST00000544432 KIDINS220Q9ULH0 1771 aa21.96■■□□□ 1.11
VAMP1-208ENST00000544432 AGLP35573 1532 aa21.96■■□□□ 1.11
VAMP1-208ENST00000544432 ABCA6Q8N139 1617 aa21.95■■□□□ 1.1
VAMP1-208ENST00000544432 MBD5Q9P267 1494 aa21.95■■□□□ 1.1
VAMP1-208ENST00000544432 KANK4Q5T7N3 995 aaPredicted RBP21.94■■□□□ 1.1
VAMP1-208ENST00000544432 RSPH4AQ5TD94 716 aa21.93■■□□□ 1.1
VAMP1-208ENST00000544432 RIMS1Q86UR5 1692 aaKnown RBP21.91■■□□□ 1.1
VAMP1-208ENST00000544432 APLP2Q06481 763 aa21.9■■□□□ 1.1
VAMP1-208ENST00000544432 ATP7AQ04656 1500 aa21.89■■□□□ 1.09
VAMP1-208ENST00000544432 RTEL1-TNFRSF6BF6WH68 1400 aa21.88■■□□□ 1.09
VAMP1-208ENST00000544432 INO80Q9ULG1 1556 aaPredicted RBP21.87■■□□□ 1.09
VAMP1-208ENST00000544432 FER1L4A9Z1Z3 1794 aa21.87■■□□□ 1.09
VAMP1-208ENST00000544432 CAMSAP2Q08AD1 1489 aa21.86■■□□□ 1.09
VAMP1-208ENST00000544432 MIA2Q96PC5 1412 aa21.84■■□□□ 1.09
VAMP1-208ENST00000544432 A2MP01023 1474 aa21.83■■□□□ 1.09
VAMP1-208ENST00000544432 CCDC141Q6ZP82 1450 aa21.83■■□□□ 1.09
VAMP1-208ENST00000544432 MYOM3Q5VTT5 1437 aa21.82■■□□□ 1.08
VAMP1-208ENST00000544432 PLXNC1O60486 1568 aa21.8■■□□□ 1.08
VAMP1-208ENST00000544432 ARHGEF5Q12774 1597 aa21.8■■□□□ 1.08
VAMP1-208ENST00000544432 ESF1Q9H501 851 aaKnown RBP21.8■■□□□ 1.08
VAMP1-208ENST00000544432 LMTK3Q96Q04 1460 aa21.79■■□□□ 1.08
VAMP1-208ENST00000544432 TSPY4P0CV99 314 aa21.79■■□□□ 1.08
VAMP1-208ENST00000544432 TSPY10P0CW01 314 aa21.79■■□□□ 1.08
VAMP1-208ENST00000544432 CNTLNQ9NXG0 1405 aa21.79■■□□□ 1.08
VAMP1-208ENST00000544432 PLPPR3Q6T4P5 718 aa21.78■■□□□ 1.08
VAMP1-208ENST00000544432 PPP6R1Q9UPN7 881 aa21.78■■□□□ 1.08
VAMP1-208ENST00000544432 DHX29Q7Z478 1369 aaKnown RBP21.77■■□□□ 1.08
VAMP1-208ENST00000544432 CEBPAP49715 358 aaPredicted RBP21.77■■□□□ 1.08
VAMP1-208ENST00000544432 ADGBQ8N7X0 1667 aa21.76■■□□□ 1.07
VAMP1-208ENST00000544432 SETD1BQ9UPS6 1966 aaKnown RBP21.71■■□□□ 1.07
VAMP1-208ENST00000544432 GGT6Q6P531 493 aa21.7■■□□□ 1.06
VAMP1-208ENST00000544432 ZMYM3Q14202 1370 aa21.69■■□□□ 1.06
VAMP1-208ENST00000544432 MAST1Q9Y2H9 1570 aa21.69■■□□□ 1.06
VAMP1-208ENST00000544432 C3P01024 1663 aa21.67■■□□□ 1.06
VAMP1-208ENST00000544432 MROH2AA6NES4 1674 aa21.66■■□□□ 1.06
VAMP1-208ENST00000544432 FGD6Q6ZV73 1430 aa21.66■■□□□ 1.06
VAMP1-208ENST00000544432 HSPA2P54652 639 aa21.66■■□□□ 1.06
VAMP1-208ENST00000544432 NPATQ14207 1427 aa21.65■■□□□ 1.06
VAMP1-208ENST00000544432 KIF3BO15066 747 aa21.65■■□□□ 1.06
VAMP1-208ENST00000544432 PREX1Q8TCU6 1659 aa21.65■■□□□ 1.06
VAMP1-208ENST00000544432 UHRF1BP1Q6BDS2 1440 aa21.64■■□□□ 1.06
VAMP1-208ENST00000544432 TCOF1Q13428 1488 aaKnown RBP21.64■■□□□ 1.05
VAMP1-208ENST00000544432 PTPN23Q9H3S7 1636 aa21.63■■□□□ 1.05
VAMP1-208ENST00000544432 ABCC5O15440 1437 aa21.62■■□□□ 1.05
VAMP1-208ENST00000544432 FAM135AQ9P2D6 1515 aa21.61■■□□□ 1.05
VAMP1-208ENST00000544432 SHANK2Q9UPX8 1470 aa21.6■■□□□ 1.05
VAMP1-208ENST00000544432 CLTCQ00610 1675 aaKnown RBP21.59■■□□□ 1.05
VAMP1-208ENST00000544432 DAPK1P53355 1430 aa21.57■■□□□ 1.04
VAMP1-208ENST00000544432 PTPRKQ15262 1439 aa21.57■■□□□ 1.04
VAMP1-208ENST00000544432 WASHC2CQ9Y4E1 1318 aa21.55■■□□□ 1.04
VAMP1-208ENST00000544432 DNMT1P26358 1616 aaKnown RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms