RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 ARID4BQ4LE39 1312 aaPredicted RBP19.26■□□□□ 0.67
CLSTN3-211ENST00000541667 POGZQ7Z3K3 1410 aa19.26■□□□□ 0.67
CLSTN3-211ENST00000541667 PCF11O94913 1555 aaKnown RBP19.26■□□□□ 0.67
CLSTN3-211ENST00000541667 CLIP1P30622 1438 aa19.25■□□□□ 0.67
CLSTN3-211ENST00000541667 SIGLEC1Q9BZZ2 1709 aa19.25■□□□□ 0.67
CLSTN3-211ENST00000541667 MYO5CQ9NQX4 1742 aa19.24■□□□□ 0.67
CLSTN3-211ENST00000541667 AFAP1Q8N556 730 aa19.23■□□□□ 0.67
CLSTN3-211ENST00000541667 ZFYVE16Q7Z3T8 1539 aa19.22■□□□□ 0.67
CLSTN3-211ENST00000541667 CCDC18Q5T9S5 1454 aa19.22■□□□□ 0.67
CLSTN3-211ENST00000541667 MADDQ8WXG6 1647 aa19.21■□□□□ 0.67
CLSTN3-211ENST00000541667 FYCO1Q9BQS8 1478 aa19.2■□□□□ 0.66
CLSTN3-211ENST00000541667 CDC42BPBQ9Y5S2 1711 aa19.2■□□□□ 0.66
CLSTN3-211ENST00000541667 ARHGAP5Q13017 1502 aa19.18■□□□□ 0.66
CLSTN3-211ENST00000541667 ARHGEF12Q9NZN5 1544 aa19.18■□□□□ 0.66
CLSTN3-211ENST00000541667 ATP10AO60312 1499 aa19.17■□□□□ 0.66
CLSTN3-211ENST00000541667 ZNF518AQ6AHZ1 1483 aa19.15■□□□□ 0.66
CLSTN3-211ENST00000541667 KDM5CP41229 1560 aa19.15■□□□□ 0.66
CLSTN3-211ENST00000541667 TRAPPC8Q9Y2L5 1435 aa19.14■□□□□ 0.65
CLSTN3-211ENST00000541667 MLECQ14165 292 aa19.13■□□□□ 0.65
CLSTN3-211ENST00000541667 PREX2Q70Z35 1606 aa19.12■□□□□ 0.65
CLSTN3-211ENST00000541667 RIMS1Q86UR5 1692 aaKnown RBP19.11■□□□□ 0.65
CLSTN3-211ENST00000541667 GPATCH8Q9UKJ3 1502 aaKnown RBP19.11■□□□□ 0.65
CLSTN3-211ENST00000541667 C9orf84Q5VXU9 1444 aa19.11■□□□□ 0.65
CLSTN3-211ENST00000541667 MLH3Q9UHC1 1453 aa19.1■□□□□ 0.65
CLSTN3-211ENST00000541667 CDC42BPAQ5VT25 1732 aa19.1■□□□□ 0.65
CLSTN3-211ENST00000541667 ILDR1Q86SU0 546 aaPredicted RBP19.09■□□□□ 0.65
CLSTN3-211ENST00000541667 ABCC1P33527 1531 aa19.09■□□□□ 0.65
CLSTN3-211ENST00000541667 LMTK3Q96Q04 1460 aa19.09■□□□□ 0.65
CLSTN3-211ENST00000541667 CEP162Q5TB80 1403 aa19.07■□□□□ 0.64
CLSTN3-211ENST00000541667 LOC105371045A0A1W2PR82 267 aa19.06■□□□□ 0.64
CLSTN3-211ENST00000541667 DIP2CQ9Y2E4 1556 aa19.06■□□□□ 0.64
CLSTN3-211ENST00000541667 HNRNPMP52272 730 aaKnown RBP eCLIP19.04■□□□□ 0.64
CLSTN3-211ENST00000541667 ZNF777Q9ULD5 760 aaPredicted RBP19.04■□□□□ 0.64
CLSTN3-211ENST00000541667 ITSN2Q9NZM3 1697 aa19.04■□□□□ 0.64
CLSTN3-211ENST00000541667 SAMD9LQ8IVG5 1584 aa19.03■□□□□ 0.64
CLSTN3-211ENST00000541667 REREQ9P2R6 1566 aa19.03■□□□□ 0.64
CLSTN3-211ENST00000541667 CEBPAP49715 358 aaPredicted RBP19.03■□□□□ 0.64
CLSTN3-211ENST00000541667 PLPPR3Q6T4P5 718 aa19.03■□□□□ 0.64
CLSTN3-211ENST00000541667 ABCA6Q8N139 1617 aa19.03■□□□□ 0.64
CLSTN3-211ENST00000541667 MYT1LQ9UL68 1186 aa19.02■□□□□ 0.64
CLSTN3-211ENST00000541667 KIDINS220Q9ULH0 1771 aa19.01■□□□□ 0.63
CLSTN3-211ENST00000541667 HSPA2P54652 639 aa19.01■□□□□ 0.63
CLSTN3-211ENST00000541667 CFDP1Q9UEE9 299 aaPredicted RBP19.01■□□□□ 0.63
CLSTN3-211ENST00000541667 FER1L4A9Z1Z3 1794 aa19.01■□□□□ 0.63
CLSTN3-211ENST00000541667 KIAA1107Q9UPP5 1409 aa19■□□□□ 0.63
CLSTN3-211ENST00000541667 MTUS2Q5JR59 1369 aa19■□□□□ 0.63
CLSTN3-211ENST00000541667 AGLP35573 1532 aa19■□□□□ 0.63
CLSTN3-211ENST00000541667 CCNB3Q8WWL7 1395 aa18.99■□□□□ 0.63
CLSTN3-211ENST00000541667 ZNF644Q9H582 1327 aaPredicted RBP18.99■□□□□ 0.63
CLSTN3-211ENST00000541667 SYCP2Q9BX26 1530 aa18.97■□□□□ 0.63
CLSTN3-211ENST00000541667 SPAG9O60271 1321 aaKnown RBP18.96■□□□□ 0.63
CLSTN3-211ENST00000541667 MBD5Q9P267 1494 aa18.93■□□□□ 0.62
CLSTN3-211ENST00000541667 TIAM1Q13009 1591 aa18.93■□□□□ 0.62
CLSTN3-211ENST00000541667 PLEKHH2Q8IVE3 1493 aa18.92■□□□□ 0.62
CLSTN3-211ENST00000541667 EHBP1L1Q8N3D4 1523 aa18.91■□□□□ 0.62
CLSTN3-211ENST00000541667 SETD1BQ9UPS6 1966 aaKnown RBP18.9■□□□□ 0.62
CLSTN3-211ENST00000541667 ATP7AQ04656 1500 aa18.87■□□□□ 0.61
CLSTN3-211ENST00000541667 NCOA2Q15596 1464 aa18.87■□□□□ 0.61
CLSTN3-211ENST00000541667 VPS8Q8N3P4 1428 aa18.87■□□□□ 0.61
CLSTN3-211ENST00000541667 INO80Q9ULG1 1556 aaPredicted RBP18.87■□□□□ 0.61
CLSTN3-211ENST00000541667 C3P01024 1663 aa18.85■□□□□ 0.61
CLSTN3-211ENST00000541667 PLXNC1O60486 1568 aa18.85■□□□□ 0.61
CLSTN3-211ENST00000541667 A2MP01023 1474 aa18.84■□□□□ 0.61
CLSTN3-211ENST00000541667 KANK4Q5T7N3 995 aaPredicted RBP18.84■□□□□ 0.61
CLSTN3-211ENST00000541667 PREX1Q8TCU6 1659 aa18.84■□□□□ 0.61
CLSTN3-211ENST00000541667 RTEL1-TNFRSF6BF6WH68 1400 aa18.83■□□□□ 0.6
CLSTN3-211ENST00000541667 CNTLNQ9NXG0 1405 aa18.83■□□□□ 0.6
CLSTN3-211ENST00000541667 ZMYM3Q14202 1370 aa18.82■□□□□ 0.6
CLSTN3-211ENST00000541667 FBXO41Q8TF61 875 aa18.82■□□□□ 0.6
CLSTN3-211ENST00000541667 ESF1Q9H501 851 aaKnown RBP18.82■□□□□ 0.6
CLSTN3-211ENST00000541667 SUPT6HQ7KZ85 1726 aaKnown RBP18.82■□□□□ 0.6
CLSTN3-211ENST00000541667 LRRC9Q6ZRR7 1453 aa18.81■□□□□ 0.6
CLSTN3-211ENST00000541667 UHRF1BP1Q6BDS2 1440 aa18.8■□□□□ 0.6
CLSTN3-211ENST00000541667 STRCQ7RTU9 1775 aa18.79■□□□□ 0.6
CLSTN3-211ENST00000541667 RSPH4AQ5TD94 716 aa18.79■□□□□ 0.6
CLSTN3-211ENST00000541667 GGT6Q6P531 493 aa18.79■□□□□ 0.6
CLSTN3-211ENST00000541667 DHX29Q7Z478 1369 aaKnown RBP18.79■□□□□ 0.6
CLSTN3-211ENST00000541667 MAP3K1Q13233 1512 aa18.78■□□□□ 0.6
CLSTN3-211ENST00000541667 CAMSAP2Q08AD1 1489 aa18.77■□□□□ 0.6
CLSTN3-211ENST00000541667 PPP6R1Q9UPN7 881 aa18.77■□□□□ 0.6
CLSTN3-211ENST00000541667 MROH2AA6NES4 1674 aa18.76■□□□□ 0.59
CLSTN3-211ENST00000541667 NPATQ14207 1427 aa18.75■□□□□ 0.59
CLSTN3-211ENST00000541667 CCDC141Q6ZP82 1450 aa18.75■□□□□ 0.59
CLSTN3-211ENST00000541667 ADGBQ8N7X0 1667 aa18.75■□□□□ 0.59
CLSTN3-211ENST00000541667 CERKQ8TCT0 537 aa18.73■□□□□ 0.59
CLSTN3-211ENST00000541667 PTPRKQ15262 1439 aa18.73■□□□□ 0.59
CLSTN3-211ENST00000541667 DMRT2Q9Y5R5 561 aa18.72■□□□□ 0.59
CLSTN3-211ENST00000541667 CLTCQ00610 1675 aaKnown RBP18.72■□□□□ 0.59
CLSTN3-211ENST00000541667 ARHGEF5Q12774 1597 aa18.71■□□□□ 0.59
CLSTN3-211ENST00000541667 KIF3BO15066 747 aa18.7■□□□□ 0.58
CLSTN3-211ENST00000541667 PTPRTO14522 1441 aa18.68■□□□□ 0.58
CLSTN3-211ENST00000541667 TSPY4P0CV99 314 aa18.68■□□□□ 0.58
CLSTN3-211ENST00000541667 TSPY10P0CW01 314 aa18.68■□□□□ 0.58
CLSTN3-211ENST00000541667 NCOA1Q15788 1441 aa18.67■□□□□ 0.58
CLSTN3-211ENST00000541667 MIA2Q96PC5 1412 aa18.66■□□□□ 0.58
CLSTN3-211ENST00000541667 MYOM3Q5VTT5 1437 aa18.66■□□□□ 0.58
CLSTN3-211ENST00000541667 FBXO31Q5XUX0 539 aaPredicted RBP18.65■□□□□ 0.58
CLSTN3-211ENST00000541667 NCKAP5LQ9HCH0 1330 aa18.63■□□□□ 0.57
CLSTN3-211ENST00000541667 MAST1Q9Y2H9 1570 aa18.63■□□□□ 0.57
CLSTN3-211ENST00000541667 CAMSAP1Q5T5Y3 1602 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms