RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 CIZ1Q9ULV3 898 aaPredicted RBP12.48□□□□□ -0.41
PRKDC-210ENST00000541488 KHSRPQ92945 711 aaKnown RBP eCLIP12.47□□□□□ -0.41
PRKDC-210ENST00000541488 SPOCK2Q92563 424 aa12.4□□□□□ -0.42
PRKDC-210ENST00000541488 HCSTQ9UBK5 93 aa12.39□□□□□ -0.43
PRKDC-210ENST00000541488 MS4A4AQ96JQ5 239 aa12.38□□□□□ -0.43
PRKDC-210ENST00000541488 PBX2P40425 430 aa12.35□□□□□ -0.43
PRKDC-210ENST00000541488 POTEEQ6S8J3 1075 aa12.34□□□□□ -0.43
PRKDC-210ENST00000541488 AXIN2Q9Y2T1 843 aa12.34□□□□□ -0.43
PRKDC-210ENST00000541488 SOX12O15370 315 aa12.31□□□□□ -0.44
PRKDC-210ENST00000541488 PHF8Q9UPP1 1060 aa12.3□□□□□ -0.44
PRKDC-210ENST00000541488 NUDT7P0C024 238 aa12.29□□□□□ -0.44
PRKDC-210ENST00000541488 LHX6Q9UPM6 363 aa12.25□□□□□ -0.45
PRKDC-210ENST00000541488 ADGRD1Q6QNK2 874 aa12.23□□□□□ -0.45
PRKDC-210ENST00000541488 TRIM41Q8WV44 630 aa12.21□□□□□ -0.45
PRKDC-210ENST00000541488 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.18□□□□□ -0.46
PRKDC-210ENST00000541488 ZFP91Q96JP5 570 aaPredicted RBP12.18□□□□□ -0.46
PRKDC-210ENST00000541488 KIF3CO14782 793 aa12.16□□□□□ -0.46
PRKDC-210ENST00000541488 PCDHGA4Q9Y5G9 962 aa12.16□□□□□ -0.46
PRKDC-210ENST00000541488 C2orf72A6NCS6 295 aa12.14□□□□□ -0.47
PRKDC-210ENST00000541488 ARHGAP33O14559 1287 aa12.14□□□□□ -0.47
PRKDC-210ENST00000541488 RIOK3O14730 519 aaKnown RBP12.13□□□□□ -0.47
PRKDC-210ENST00000541488 RNF25Q96BH1 459 aaPredicted RBP12.12□□□□□ -0.47
PRKDC-210ENST00000541488 HRO43593 1189 aa12.11□□□□□ -0.47
PRKDC-210ENST00000541488 KCTD12Q96CX2 325 aaKnown RBP12.11□□□□□ -0.47
PRKDC-210ENST00000541488 SLC34A2O95436 690 aa12.1□□□□□ -0.47
PRKDC-210ENST00000541488 NLRP6P59044 892 aa12.1□□□□□ -0.47
PRKDC-210ENST00000541488 FBXO22Q8NEZ5 403 aa12.1□□□□□ -0.47
PRKDC-210ENST00000541488 TK2O00142 265 aa12.09□□□□□ -0.47
PRKDC-210ENST00000541488 VGFO15240 615 aaPredicted RBP12.08□□□□□ -0.48
PRKDC-210ENST00000541488 DMRTA1Q5VZB9 504 aa12.08□□□□□ -0.48
PRKDC-210ENST00000541488 IRX2Q9BZI1 471 aaPredicted RBP12.08□□□□□ -0.48
PRKDC-210ENST00000541488 PSEN2P49810 448 aa12.05□□□□□ -0.48
PRKDC-210ENST00000541488 RGS20O76081 388 aa12.04□□□□□ -0.48
PRKDC-210ENST00000541488 PSDA5PKW4 1024 aaPredicted RBP12.03□□□□□ -0.48
PRKDC-210ENST00000541488 ECM2O94769 699 aaPredicted RBP12.01□□□□□ -0.49
PRKDC-210ENST00000541488 PKD2Q13563 968 aa11.99□□□□□ -0.49
PRKDC-210ENST00000541488 MFRPQ9BY79 579 aa11.98□□□□□ -0.49
PRKDC-210ENST00000541488 STAC3Q96MF2 364 aa11.97□□□□□ -0.49
PRKDC-210ENST00000541488 KDM4FA0A1W2PPD8 638 aa11.96□□□□□ -0.49
PRKDC-210ENST00000541488 PTPN5P54829 565 aa11.96□□□□□ -0.49
PRKDC-210ENST00000541488 IFFO2Q5TF58 517 aa11.96□□□□□ -0.49
PRKDC-210ENST00000541488 BCL11BQ9C0K0 894 aaPredicted RBP11.96□□□□□ -0.49
PRKDC-210ENST00000541488 TMC2Q8TDI7 906 aa11.95□□□□□ -0.5
PRKDC-210ENST00000541488 A0A0G2JS52 829 aa11.93□□□□□ -0.5
PRKDC-210ENST00000541488 RGL2O15211 777 aa11.91□□□□□ -0.5
PRKDC-210ENST00000541488 PPP4R3BQ5MIZ7 849 aa11.89□□□□□ -0.51
PRKDC-210ENST00000541488 STK24Q9Y6E0 443 aa11.89□□□□□ -0.51
PRKDC-210ENST00000541488 KCNK17Q96T54 332 aa11.87□□□□□ -0.51
PRKDC-210ENST00000541488 PTCD2Q8WV60 388 aaKnown RBP11.86□□□□□ -0.51
PRKDC-210ENST00000541488 VPS9D1Q9Y2B5 631 aa11.85□□□□□ -0.51
PRKDC-210ENST00000541488 THSD4Q6ZMP0 1018 aa11.82□□□□□ -0.52
PRKDC-210ENST00000541488 KCNH8Q96L42 1107 aa11.81□□□□□ -0.52
PRKDC-210ENST00000541488 Q6ZNB5 142 aa11.79□□□□□ -0.52
PRKDC-210ENST00000541488 STK25O00506 426 aa11.78□□□□□ -0.52
PRKDC-210ENST00000541488 TAOK2Q9UL54 1235 aa11.78□□□□□ -0.52
PRKDC-210ENST00000541488 PLPP6Q8IY26 295 aa11.73□□□□□ -0.53
PRKDC-210ENST00000541488 WNT2BQ93097 391 aa11.73□□□□□ -0.53
PRKDC-210ENST00000541488 BHMG1C9JSJ3 638 aaPredicted RBP11.72□□□□□ -0.53
PRKDC-210ENST00000541488 PPP1R37O75864 691 aa11.72□□□□□ -0.53
PRKDC-210ENST00000541488 SLC4A5Q9BY07 1137 aa11.72□□□□□ -0.53
PRKDC-210ENST00000541488 GOLGA8CPA6NN73 597 aa11.71□□□□□ -0.53
PRKDC-210ENST00000541488 DCAF8L2P0C7V8 631 aa11.71□□□□□ -0.53
PRKDC-210ENST00000541488 FOXK1P85037 733 aa11.7□□□□□ -0.54
PRKDC-210ENST00000541488 TBC1D12O60347 775 aa11.69□□□□□ -0.54
PRKDC-210ENST00000541488 MRPL50Q8N5N7 158 aaKnown RBP11.67□□□□□ -0.54
PRKDC-210ENST00000541488 BCL2L12Q9HB09 334 aa11.67□□□□□ -0.54
PRKDC-210ENST00000541488 ZNF454Q8N9F8 522 aa11.66□□□□□ -0.54
PRKDC-210ENST00000541488 CHGAP10645 457 aaKnown RBP11.65□□□□□ -0.54
PRKDC-210ENST00000541488 ZBED2Q9BTP6 218 aa11.64□□□□□ -0.55
PRKDC-210ENST00000541488 DSG2Q14126 1118 aa11.63□□□□□ -0.55
PRKDC-210ENST00000541488 ITGBL1O95965 494 aaPredicted RBP11.62□□□□□ -0.55
PRKDC-210ENST00000541488 RTN4Q9NQC3 1192 aaKnown RBP11.62□□□□□ -0.55
PRKDC-210ENST00000541488 LCE2BO14633 110 aa11.61□□□□□ -0.55
PRKDC-210ENST00000541488 GPHNQ9NQX3 736 aaPredicted RBP11.61□□□□□ -0.55
PRKDC-210ENST00000541488 PTPREP23469 700 aa11.59□□□□□ -0.55
PRKDC-210ENST00000541488 NBPF3Q9H094 633 aa11.57□□□□□ -0.56
PRKDC-210ENST00000541488 FOSBP53539 338 aa11.56□□□□□ -0.56
PRKDC-210ENST00000541488 AMER1Q5JTC6 1135 aaPredicted RBP11.56□□□□□ -0.56
PRKDC-210ENST00000541488 HS6ST3Q8IZP7 471 aa11.56□□□□□ -0.56
PRKDC-210ENST00000541488 OXER1Q8TDS5 423 aa11.56□□□□□ -0.56
PRKDC-210ENST00000541488 UPF1Q92900 1129 aaKnown RBP eCLIP11.55□□□□□ -0.56
PRKDC-210ENST00000541488 LAPTM4AQ15012 233 aa11.52□□□□□ -0.57
PRKDC-210ENST00000541488 TRAF7Q6Q0C0 670 aa11.52□□□□□ -0.57
PRKDC-210ENST00000541488 ANKK1Q8NFD2 765 aa11.5□□□□□ -0.57
PRKDC-210ENST00000541488 BCAMP50895 628 aa11.48□□□□□ -0.57
PRKDC-210ENST00000541488 NKX1-1Q15270 411 aaPredicted RBP11.47□□□□□ -0.57
PRKDC-210ENST00000541488 ADAM33Q9BZ11 813 aa11.47□□□□□ -0.57
PRKDC-210ENST00000541488 GFRA3O60609 400 aa11.46□□□□□ -0.57
PRKDC-210ENST00000541488 JPH4Q96JJ6 628 aa11.46□□□□□ -0.57
PRKDC-210ENST00000541488 KCNC4Q03721 635 aa11.45□□□□□ -0.58
PRKDC-210ENST00000541488 ZDHHC16Q969W1 377 aa11.44□□□□□ -0.58
PRKDC-210ENST00000541488 SOWAHBA6NEL2 793 aa11.41□□□□□ -0.58
PRKDC-210ENST00000541488 PROX2Q3B8N5 592 aa11.41□□□□□ -0.58
PRKDC-210ENST00000541488 RABGEF1Q9UJ41 708 aa11.41□□□□□ -0.58
PRKDC-210ENST00000541488 NYAP1Q6ZVC0 841 aa11.4□□□□□ -0.58
PRKDC-210ENST00000541488 ANO8Q9HCE9 1232 aaPredicted RBP11.4□□□□□ -0.58
PRKDC-210ENST00000541488 WBP1LQ9NX94 342 aa11.4□□□□□ -0.58
PRKDC-210ENST00000541488 PPP1R3GB7ZBB8 358 aa11.38□□□□□ -0.59
PRKDC-210ENST00000541488 EVI5O60447 810 aa11.35□□□□□ -0.59
PRKDC-210ENST00000541488 PPP1R15BQ5SWA1 713 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms