RNA–Protein interactions for RNA: ENST00000540683.1

CDCA3-208, Transcript of cell division cycle associated 3, humanhuman

TSL 2 BASIC

Gene CDCA3, Length 985 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-208ENST00000540683 ARID4BQ4LE39 1312 aaPredicted RBP16.65■□□□□ 0.26
CDCA3-208ENST00000540683 ARHGAP5Q13017 1502 aa16.65■□□□□ 0.26
CDCA3-208ENST00000540683 ARHGEF40Q8TER5 1519 aa16.65■□□□□ 0.26
CDCA3-208ENST00000540683 FRMPD1Q5SYB0 1578 aa16.64■□□□□ 0.25
CDCA3-208ENST00000540683 SCAPERQ9BY12 1400 aa16.63■□□□□ 0.25
CDCA3-208ENST00000540683 ZNF518AQ6AHZ1 1483 aa16.62■□□□□ 0.25
CDCA3-208ENST00000540683 ZFYVE16Q7Z3T8 1539 aa16.62■□□□□ 0.25
CDCA3-208ENST00000540683 LRRIQ1Q96JM4 1722 aa16.6■□□□□ 0.25
CDCA3-208ENST00000540683 PREX2Q70Z35 1606 aa16.57■□□□□ 0.24
CDCA3-208ENST00000540683 BCORL1Q5H9F3 1711 aa16.56■□□□□ 0.24
CDCA3-208ENST00000540683 CEP162Q5TB80 1403 aa16.56■□□□□ 0.24
CDCA3-208ENST00000540683 MTUS2Q5JR59 1369 aa16.56■□□□□ 0.24
CDCA3-208ENST00000540683 ADAMTSL3P82987 1691 aa16.56■□□□□ 0.24
CDCA3-208ENST00000540683 MYT1LQ9UL68 1186 aa16.55■□□□□ 0.24
CDCA3-208ENST00000540683 ATP10AO60312 1499 aa16.54■□□□□ 0.24
CDCA3-208ENST00000540683 PLEKHH2Q8IVE3 1493 aa16.54■□□□□ 0.24
CDCA3-208ENST00000540683 C9orf84Q5VXU9 1444 aa16.53■□□□□ 0.24
CDCA3-208ENST00000540683 CDC42BPBQ9Y5S2 1711 aa16.53■□□□□ 0.24
CDCA3-208ENST00000540683 PTPRMP28827 1452 aa16.52■□□□□ 0.23
CDCA3-208ENST00000540683 CCNB3Q8WWL7 1395 aa16.51■□□□□ 0.23
CDCA3-208ENST00000540683 KDM5CP41229 1560 aa16.51■□□□□ 0.23
CDCA3-208ENST00000540683 HECW2Q9P2P5 1572 aa16.51■□□□□ 0.23
CDCA3-208ENST00000540683 CDC42BPAQ5VT25 1732 aa16.5■□□□□ 0.23
CDCA3-208ENST00000540683 MLH3Q9UHC1 1453 aa16.49■□□□□ 0.23
CDCA3-208ENST00000540683 YEATS2Q9ULM3 1422 aa16.49■□□□□ 0.23
CDCA3-208ENST00000540683 ABCC1P33527 1531 aa16.49■□□□□ 0.23
CDCA3-208ENST00000540683 EHBP1L1Q8N3D4 1523 aa16.49■□□□□ 0.23
CDCA3-208ENST00000540683 CFDP1Q9UEE9 299 aaPredicted RBP16.48■□□□□ 0.23
CDCA3-208ENST00000540683 MADDQ8WXG6 1647 aa16.48■□□□□ 0.23
CDCA3-208ENST00000540683 REREQ9P2R6 1566 aa16.47■□□□□ 0.23
CDCA3-208ENST00000540683 ITSN2Q9NZM3 1697 aa16.46■□□□□ 0.23
CDCA3-208ENST00000540683 KIAA1107Q9UPP5 1409 aa16.46■□□□□ 0.23
CDCA3-208ENST00000540683 AFAP1Q8N556 730 aa16.46■□□□□ 0.23
CDCA3-208ENST00000540683 GPATCH8Q9UKJ3 1502 aaKnown RBP16.45■□□□□ 0.22
CDCA3-208ENST00000540683 ESF1Q9H501 851 aaKnown RBP16.45■□□□□ 0.22
CDCA3-208ENST00000540683 ZNF777Q9ULD5 760 aaPredicted RBP16.45■□□□□ 0.22
CDCA3-208ENST00000540683 RIMS1Q86UR5 1692 aaKnown RBP16.43■□□□□ 0.22
CDCA3-208ENST00000540683 FER1L4A9Z1Z3 1794 aa16.43■□□□□ 0.22
CDCA3-208ENST00000540683 VPS8Q8N3P4 1428 aa16.41■□□□□ 0.22
CDCA3-208ENST00000540683 SUPT6HQ7KZ85 1726 aaKnown RBP16.41■□□□□ 0.22
CDCA3-208ENST00000540683 SPAG9O60271 1321 aaKnown RBP16.41■□□□□ 0.22
CDCA3-208ENST00000540683 AGLP35573 1532 aa16.4■□□□□ 0.22
CDCA3-208ENST00000540683 DIP2CQ9Y2E4 1556 aa16.4■□□□□ 0.22
CDCA3-208ENST00000540683 MLECQ14165 292 aa16.4■□□□□ 0.22
CDCA3-208ENST00000540683 RSPH4AQ5TD94 716 aa16.4■□□□□ 0.22
CDCA3-208ENST00000540683 ARHGEF12Q9NZN5 1544 aa16.4■□□□□ 0.22
CDCA3-208ENST00000540683 SAMD9LQ8IVG5 1584 aa16.39■□□□□ 0.21
CDCA3-208ENST00000540683 TRAPPC8Q9Y2L5 1435 aa16.39■□□□□ 0.21
CDCA3-208ENST00000540683 APLP2Q06481 763 aa16.39■□□□□ 0.21
CDCA3-208ENST00000540683 SYCP2Q9BX26 1530 aa16.39■□□□□ 0.21
CDCA3-208ENST00000540683 MAP3K1Q13233 1512 aa16.38■□□□□ 0.21
CDCA3-208ENST00000540683 TIAM1Q13009 1591 aa16.37■□□□□ 0.21
CDCA3-208ENST00000540683 ABCA6Q8N139 1617 aa16.37■□□□□ 0.21
CDCA3-208ENST00000540683 CNTLNQ9NXG0 1405 aa16.36■□□□□ 0.21
CDCA3-208ENST00000540683 KIDINS220Q9ULH0 1771 aa16.35■□□□□ 0.21
CDCA3-208ENST00000540683 ATP7AQ04656 1500 aa16.35■□□□□ 0.21
CDCA3-208ENST00000540683 LOC105371045A0A1W2PR82 267 aa16.34■□□□□ 0.21
CDCA3-208ENST00000540683 HNRNPMP52272 730 aaKnown RBP eCLIP16.34■□□□□ 0.21
CDCA3-208ENST00000540683 PPP6R1Q9UPN7 881 aa16.33■□□□□ 0.2
CDCA3-208ENST00000540683 NCOA2Q15596 1464 aa16.33■□□□□ 0.2
CDCA3-208ENST00000540683 SIGLEC1Q9BZZ2 1709 aa16.33■□□□□ 0.2
CDCA3-208ENST00000540683 RTEL1-TNFRSF6BF6WH68 1400 aa16.32■□□□□ 0.2
CDCA3-208ENST00000540683 SETD1BQ9UPS6 1966 aaKnown RBP16.32■□□□□ 0.2
CDCA3-208ENST00000540683 LRRC9Q6ZRR7 1453 aa16.31■□□□□ 0.2
CDCA3-208ENST00000540683 ADGBQ8N7X0 1667 aa16.3■□□□□ 0.2
CDCA3-208ENST00000540683 INO80Q9ULG1 1556 aaPredicted RBP16.3■□□□□ 0.2
CDCA3-208ENST00000540683 LMTK3Q96Q04 1460 aa16.3■□□□□ 0.2
CDCA3-208ENST00000540683 TSPY4P0CV99 314 aa16.29■□□□□ 0.2
CDCA3-208ENST00000540683 TSPY10P0CW01 314 aa16.29■□□□□ 0.2
CDCA3-208ENST00000540683 PREX1Q8TCU6 1659 aa16.29■□□□□ 0.2
CDCA3-208ENST00000540683 A2MP01023 1474 aa16.29■□□□□ 0.2
CDCA3-208ENST00000540683 CCDC141Q6ZP82 1450 aa16.29■□□□□ 0.2
CDCA3-208ENST00000540683 UHRF1BP1Q6BDS2 1440 aa16.28■□□□□ 0.2
CDCA3-208ENST00000540683 DMRT2Q9Y5R5 561 aa16.26■□□□□ 0.19
CDCA3-208ENST00000540683 CAMSAP2Q08AD1 1489 aa16.26■□□□□ 0.19
CDCA3-208ENST00000540683 MBD5Q9P267 1494 aa16.26■□□□□ 0.19
CDCA3-208ENST00000540683 MROH2AA6NES4 1674 aa16.26■□□□□ 0.19
CDCA3-208ENST00000540683 MIA2Q96PC5 1412 aa16.26■□□□□ 0.19
CDCA3-208ENST00000540683 PLXNC1O60486 1568 aa16.25■□□□□ 0.19
CDCA3-208ENST00000540683 ARHGEF5Q12774 1597 aa16.25■□□□□ 0.19
CDCA3-208ENST00000540683 FAM135AQ9P2D6 1515 aa16.24■□□□□ 0.19
CDCA3-208ENST00000540683 NPATQ14207 1427 aa16.23■□□□□ 0.19
CDCA3-208ENST00000540683 ZNF644Q9H582 1327 aaPredicted RBP16.22■□□□□ 0.19
CDCA3-208ENST00000540683 DHX29Q7Z478 1369 aaKnown RBP16.22■□□□□ 0.19
CDCA3-208ENST00000540683 C3P01024 1663 aa16.21■□□□□ 0.19
CDCA3-208ENST00000540683 MYOM3Q5VTT5 1437 aa16.21■□□□□ 0.19
CDCA3-208ENST00000540683 CEBPAP49715 358 aaPredicted RBP16.19■□□□□ 0.18
CDCA3-208ENST00000540683 GGT6Q6P531 493 aa16.19■□□□□ 0.18
CDCA3-208ENST00000540683 ZMYM3Q14202 1370 aa16.18■□□□□ 0.18
CDCA3-208ENST00000540683 HSPA2P54652 639 aa16.17■□□□□ 0.18
CDCA3-208ENST00000540683 MAST1Q9Y2H9 1570 aa16.15■□□□□ 0.18
CDCA3-208ENST00000540683 KIF3BO15066 747 aa16.14■□□□□ 0.17
CDCA3-208ENST00000540683 KANK4Q5T7N3 995 aaPredicted RBP16.14■□□□□ 0.17
CDCA3-208ENST00000540683 CLTCQ00610 1675 aaKnown RBP16.14■□□□□ 0.17
CDCA3-208ENST00000540683 WASHC2CQ9Y4E1 1318 aa16.12■□□□□ 0.17
CDCA3-208ENST00000540683 KDM5DQ9BY66 1539 aa16.11■□□□□ 0.17
CDCA3-208ENST00000540683 FBXO41Q8TF61 875 aa16.11■□□□□ 0.17
CDCA3-208ENST00000540683 EIF2AK4Q9P2K8 1649 aaKnown RBP16.11■□□□□ 0.17
CDCA3-208ENST00000540683 SHANK2Q9UPX8 1470 aa16.1■□□□□ 0.17
CDCA3-208ENST00000540683 ILDR1Q86SU0 546 aaPredicted RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms