RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 MAGI2Q86UL8 1455 aa18.58■□□□□ 0.57
RTN3-209ENST00000538995 SCAPERQ9BY12 1400 aa18.58■□□□□ 0.57
RTN3-209ENST00000538995 ARHGAP5Q13017 1502 aa18.58■□□□□ 0.56
RTN3-209ENST00000538995 PREX2Q70Z35 1606 aa18.55■□□□□ 0.56
RTN3-209ENST00000538995 ZFYVE16Q7Z3T8 1539 aa18.54■□□□□ 0.56
RTN3-209ENST00000538995 ZNF518AQ6AHZ1 1483 aa18.53■□□□□ 0.56
RTN3-209ENST00000538995 CDC42BPBQ9Y5S2 1711 aa18.5■□□□□ 0.55
RTN3-209ENST00000538995 MTUS2Q5JR59 1369 aa18.5■□□□□ 0.55
RTN3-209ENST00000538995 KDM5CP41229 1560 aa18.5■□□□□ 0.55
RTN3-209ENST00000538995 YEATS2Q9ULM3 1422 aa18.49■□□□□ 0.55
RTN3-209ENST00000538995 ABCC1P33527 1531 aa18.49■□□□□ 0.55
RTN3-209ENST00000538995 EHBP1L1Q8N3D4 1523 aa18.49■□□□□ 0.55
RTN3-209ENST00000538995 ADAMTSL3P82987 1691 aa18.48■□□□□ 0.55
RTN3-209ENST00000538995 LOC105371045A0A1W2PR82 267 aa18.48■□□□□ 0.55
RTN3-209ENST00000538995 CDC42BPAQ5VT25 1732 aa18.47■□□□□ 0.55
RTN3-209ENST00000538995 GPATCH8Q9UKJ3 1502 aaKnown RBP18.47■□□□□ 0.55
RTN3-209ENST00000538995 BCORL1Q5H9F3 1711 aa18.46■□□□□ 0.55
RTN3-209ENST00000538995 VPS8Q8N3P4 1428 aa18.46■□□□□ 0.55
RTN3-209ENST00000538995 ARID4BQ4LE39 1312 aaPredicted RBP18.46■□□□□ 0.55
RTN3-209ENST00000538995 C9orf84Q5VXU9 1444 aa18.44■□□□□ 0.54
RTN3-209ENST00000538995 ATP10AO60312 1499 aa18.44■□□□□ 0.54
RTN3-209ENST00000538995 CCNB3Q8WWL7 1395 aa18.43■□□□□ 0.54
RTN3-209ENST00000538995 HECW2Q9P2P5 1572 aa18.43■□□□□ 0.54
RTN3-209ENST00000538995 MLH3Q9UHC1 1453 aa18.43■□□□□ 0.54
RTN3-209ENST00000538995 ARHGEF12Q9NZN5 1544 aa18.43■□□□□ 0.54
RTN3-209ENST00000538995 ITSN2Q9NZM3 1697 aa18.42■□□□□ 0.54
RTN3-209ENST00000538995 PLEKHH2Q8IVE3 1493 aa18.42■□□□□ 0.54
RTN3-209ENST00000538995 AFAP1Q8N556 730 aa18.42■□□□□ 0.54
RTN3-209ENST00000538995 TRAPPC8Q9Y2L5 1435 aa18.41■□□□□ 0.54
RTN3-209ENST00000538995 PTPRMP28827 1452 aa18.41■□□□□ 0.54
RTN3-209ENST00000538995 KIAA1107Q9UPP5 1409 aa18.4■□□□□ 0.54
RTN3-209ENST00000538995 SAMD9LQ8IVG5 1584 aa18.4■□□□□ 0.54
RTN3-209ENST00000538995 TIAM1Q13009 1591 aa18.39■□□□□ 0.53
RTN3-209ENST00000538995 REREQ9P2R6 1566 aa18.39■□□□□ 0.53
RTN3-209ENST00000538995 MADDQ8WXG6 1647 aa18.39■□□□□ 0.53
RTN3-209ENST00000538995 CFDP1Q9UEE9 299 aaPredicted RBP18.39■□□□□ 0.53
RTN3-209ENST00000538995 SYCP2Q9BX26 1530 aa18.38■□□□□ 0.53
RTN3-209ENST00000538995 DIP2CQ9Y2E4 1556 aa18.38■□□□□ 0.53
RTN3-209ENST00000538995 SIGLEC1Q9BZZ2 1709 aa18.37■□□□□ 0.53
RTN3-209ENST00000538995 MAP3K1Q13233 1512 aa18.36■□□□□ 0.53
RTN3-209ENST00000538995 ZNF777Q9ULD5 760 aaPredicted RBP18.36■□□□□ 0.53
RTN3-209ENST00000538995 NCOA2Q15596 1464 aa18.34■□□□□ 0.53
RTN3-209ENST00000538995 SUPT6HQ7KZ85 1726 aaKnown RBP18.34■□□□□ 0.53
RTN3-209ENST00000538995 ABCA6Q8N139 1617 aa18.34■□□□□ 0.53
RTN3-209ENST00000538995 MYT1LQ9UL68 1186 aa18.33■□□□□ 0.52
RTN3-209ENST00000538995 LRRC9Q6ZRR7 1453 aa18.33■□□□□ 0.52
RTN3-209ENST00000538995 AGLP35573 1532 aa18.32■□□□□ 0.52
RTN3-209ENST00000538995 RIMS1Q86UR5 1692 aaKnown RBP18.31■□□□□ 0.52
RTN3-209ENST00000538995 KIDINS220Q9ULH0 1771 aa18.31■□□□□ 0.52
RTN3-209ENST00000538995 SPAG9O60271 1321 aaKnown RBP18.29■□□□□ 0.52
RTN3-209ENST00000538995 HNRNPMP52272 730 aaKnown RBP eCLIP18.29■□□□□ 0.52
RTN3-209ENST00000538995 MLECQ14165 292 aa18.28■□□□□ 0.52
RTN3-209ENST00000538995 INO80Q9ULG1 1556 aaPredicted RBP18.28■□□□□ 0.52
RTN3-209ENST00000538995 ATP7AQ04656 1500 aa18.28■□□□□ 0.52
RTN3-209ENST00000538995 FER1L4A9Z1Z3 1794 aa18.27■□□□□ 0.52
RTN3-209ENST00000538995 MBD5Q9P267 1494 aa18.27■□□□□ 0.52
RTN3-209ENST00000538995 ZNF644Q9H582 1327 aaPredicted RBP18.24■□□□□ 0.51
RTN3-209ENST00000538995 SENP3Q9H4L4 574 aaPredicted RBP18.24■□□□□ 0.51
RTN3-209ENST00000538995 CAMSAP2Q08AD1 1489 aa18.24■□□□□ 0.51
RTN3-209ENST00000538995 RTEL1-TNFRSF6BF6WH68 1400 aa18.23■□□□□ 0.51
RTN3-209ENST00000538995 PLXNC1O60486 1568 aa18.22■□□□□ 0.51
RTN3-209ENST00000538995 CCDC141Q6ZP82 1450 aa18.22■□□□□ 0.51
RTN3-209ENST00000538995 KANK4Q5T7N3 995 aaPredicted RBP18.21■□□□□ 0.51
RTN3-209ENST00000538995 RSPH4AQ5TD94 716 aa18.21■□□□□ 0.51
RTN3-209ENST00000538995 A2MP01023 1474 aa18.2■□□□□ 0.5
RTN3-209ENST00000538995 LMTK3Q96Q04 1460 aa18.2■□□□□ 0.5
RTN3-209ENST00000538995 APLP2Q06481 763 aa18.19■□□□□ 0.5
RTN3-209ENST00000538995 ARHGEF5Q12774 1597 aa18.19■□□□□ 0.5
RTN3-209ENST00000538995 MIA2Q96PC5 1412 aa18.19■□□□□ 0.5
RTN3-209ENST00000538995 CNTLNQ9NXG0 1405 aa18.19■□□□□ 0.5
RTN3-209ENST00000538995 MYOM3Q5VTT5 1437 aa18.18■□□□□ 0.5
RTN3-209ENST00000538995 ADGBQ8N7X0 1667 aa18.16■□□□□ 0.5
RTN3-209ENST00000538995 ESF1Q9H501 851 aaKnown RBP18.15■□□□□ 0.5
RTN3-209ENST00000538995 PLPPR3Q6T4P5 718 aa18.12■□□□□ 0.49
RTN3-209ENST00000538995 DHX29Q7Z478 1369 aaKnown RBP18.12■□□□□ 0.49
RTN3-209ENST00000538995 PPP6R1Q9UPN7 881 aa18.11■□□□□ 0.49
RTN3-209ENST00000538995 MROH2AA6NES4 1674 aa18.1■□□□□ 0.49
RTN3-209ENST00000538995 TSPY4P0CV99 314 aa18.1■□□□□ 0.49
RTN3-209ENST00000538995 TSPY10P0CW01 314 aa18.1■□□□□ 0.49
RTN3-209ENST00000538995 CEBPAP49715 358 aaPredicted RBP18.1■□□□□ 0.49
RTN3-209ENST00000538995 PREX1Q8TCU6 1659 aa18.09■□□□□ 0.49
RTN3-209ENST00000538995 MAST1Q9Y2H9 1570 aa18.09■□□□□ 0.49
RTN3-209ENST00000538995 C3P01024 1663 aa18.09■□□□□ 0.49
RTN3-209ENST00000538995 FAM135AQ9P2D6 1515 aa18.08■□□□□ 0.48
RTN3-209ENST00000538995 NPATQ14207 1427 aa18.07■□□□□ 0.48
RTN3-209ENST00000538995 UHRF1BP1Q6BDS2 1440 aa18.07■□□□□ 0.48
RTN3-209ENST00000538995 FGD6Q6ZV73 1430 aa18.06■□□□□ 0.48
RTN3-209ENST00000538995 ILDR1Q86SU0 546 aaPredicted RBP18.05■□□□□ 0.48
RTN3-209ENST00000538995 ZMYM3Q14202 1370 aa18.04■□□□□ 0.48
RTN3-209ENST00000538995 TCOF1Q13428 1488 aaKnown RBP18.04■□□□□ 0.48
RTN3-209ENST00000538995 SHANK2Q9UPX8 1470 aa18.04■□□□□ 0.48
RTN3-209ENST00000538995 GGT6Q6P531 493 aa18.04■□□□□ 0.48
RTN3-209ENST00000538995 SETD1BQ9UPS6 1966 aaKnown RBP18.04■□□□□ 0.48
RTN3-209ENST00000538995 PTPN23Q9H3S7 1636 aa18.03■□□□□ 0.48
RTN3-209ENST00000538995 HSPA2P54652 639 aa18.03■□□□□ 0.48
RTN3-209ENST00000538995 CLTCQ00610 1675 aaKnown RBP18.01■□□□□ 0.47
RTN3-209ENST00000538995 KDM5DQ9BY66 1539 aa18■□□□□ 0.47
RTN3-209ENST00000538995 KIF3BO15066 747 aa18■□□□□ 0.47
RTN3-209ENST00000538995 ABCC5O15440 1437 aa17.99■□□□□ 0.47
RTN3-209ENST00000538995 PTPRKQ15262 1439 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms